328 research outputs found

    An effect size statistical framework for investigating sexual dimorphism in non-avian dinosaurs and other extinct taxa

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    Despite reports of sexual dimorphism in extinct taxa, such claims in non-avian dinosaurs have been underrepresented recently (~the last decade) and often criticized. Since dimorphism is widespread in sexually reproducing organisms today, underrepresentation might suggest either methodological shortcomings or that this diverse group exhibited highly unusual reproductive biology. Univariate significance testing, especially for bimodality, is ineffective and prone to false negatives. Species recognition and mutual sexual selection hypotheses, therefore, may not be required to explain supposed absence of sexual dimorphism across the grade, likely a type II error. Instead, multiple lines of evidence support sexual selection and variation of structures consistent with secondary sexual characteristics, strongly suggesting sexual dimorphism in non-avian dinosaurs. We propose a framework for studying sexual dimorphism in fossils, focusing on likely secondarily sexual traits and testing against all alternate hypotheses for variation in them using multiple lines of evidence. We use effect size statistics appropriate for low sample sizes, rather than significance testing, to analyze potential divergence of growth curves in traits and constrain estimates for dimorphism magnitude. In many cases, estimates of sexual variation can be reasonably accurate, and further developments in methods to improve sex assignments and account for intrasexual variation (e.g., mixture modelling) will improve accuracy. It is better to compare estimates for the magnitude of and support for dimorphism between datasets than to dichotomously reject or fail to reject monomorphism in a single species, enabling the study of sexual selection across phylogenies and time. We defend our approach with simulated and empirical data, including dinosaur data, showing that even simple approaches can yield fairly accurate estimates of sexual variation in many cases, allowing for comparison of species with high and low support for sexual variation.Funding provided by: National Science FoundationCrossref Funder Registry ID: http://dx.doi.org/10.13039/100000001Award Number: PLR 1341645 and FRES 192588

    Habitat geometry rather than visual acuity limits the visibility of a ground-nesting bird's clutch to terrestrial predators

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    This is the final version. Available on open access from Wiley via the DOI in this record. Data availability statement: The dryad doi: https://datadryad.org/stash/share/2yJJ6xuGiKF7Ey6H2y1rAwyqJVGYFdBgFisTb4NN34I. All data and plots for the main text and supplementary material can be found within our dryad archive. ImageJ scripts for running RNL and 3D analyses with the MICA toolbox and ImageJ can be downloaded from our GitHub: https://github.com/GeorgeHancock471/3D_RNL_Tools.The nests of ground-nesting birds rely heavily on camouflage for their survival, and predation risk, often linked to ecological changes from human activity, is a major source of mortality. Numerous ground-nesting bird populations are in decline, so understanding the effects of camouflage on their nesting behavior is relevant to their conservation concerns. Habitat three-dimensional (3D) geometry, together with predator visual abilities, viewing distance, and viewing angle, determine whether a nest is either visible, occluded, or too far away to detect. While this link is intuitive, few studies have investigated how fine-scale geometry is likely to help defend nests from different predator guilds. We quantified nest visibility based on 3D occlusion, camouflage, and predator visual modeling in northern lapwings, Vanellus vanellus, on different land management regimes. Lapwings selected local backgrounds that had a higher 3D complexity at a spatial scale greater than their entire clutches compared to local control sites. Importantly, our findings show that habitat geometry-rather than predator visual acuity-restricts nest visibility for terrestrial predators and that their field habitats, perceived by humans as open, are functionally closed with respect to a terrestrial predator searching for nests on the ground. Taken together with lapwings' careful nest site selection, our findings highlight the importance of considering habitat geometry for understanding the evolutionary ecology and management of conservation sites for ground-nesting birds.Natural Environment Research Council (NERC)Game and Wildlife Conservation Trus

    The density-matrix renormalization group

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    The density-matrix renormalization group (DMRG) is a numerical algorithm for the efficient truncation of the Hilbert space of low-dimensional strongly correlated quantum systems based on a rather general decimation prescription. This algorithm has achieved unprecedented precision in the description of one-dimensional quantum systems. It has therefore quickly acquired the status of method of choice for numerical studies of one-dimensional quantum systems. Its applications to the calculation of static, dynamic and thermodynamic quantities in such systems are reviewed. The potential of DMRG applications in the fields of two-dimensional quantum systems, quantum chemistry, three-dimensional small grains, nuclear physics, equilibrium and non-equilibrium statistical physics, and time-dependent phenomena is discussed. This review also considers the theoretical foundations of the method, examining its relationship to matrix-product states and the quantum information content of the density matrices generated by DMRG.Comment: accepted by Rev. Mod. Phys. in July 2004; scheduled to appear in the January 2005 issu

    Experimental tests of a seasonally changing visual preference for habitat in a long-distance migratory shorebird

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    Migratory shorebirds show highly organized seasonal cycles in physiological and morphological traits (body mass and composition, plumage, hormone levels, etc.), which in captivity is accompanied by restless behaviour at times when free-living birds would start migration. We introduce the idea that seasonally changing preference for habitat could motivate migrants to embark on migration and that this cognitive process could also guide them to seasonally appropriate places. We explored this by testing whether red knots (Calidris canutus), which also in captivity maintain marked circannual phenotypic rhythms, show evidence of seasonal change in preference for pictures of seasonally appropriate habitats. We first developed a method to verify whether red knots are able to memorize and discriminate contrasting pictures projected by LCD projectors. This was followed by two different experiments in which we tested for a seasonally changing preference for breeding or non-breeding habitat. When carried out during the pre-breeding season, the red knots are expected to prefer pictures of mudflats, their non-breeding habitat. At the start of the breeding season, they should prefer pictures of the tundra breeding habitat. We established that knots are able to distinguish and memorize projected images. We failed to demonstrate the predicted change in vision-based habitat preference, but for reasons of test design we do not interpret this as a strong rejection of the hypothesis. Instead, we suggest that experiments with greater numbers of individuals tested once, perhaps in combination with the provision of additional cues such as smells and sounds, will help the development of these ideas further

    Survey of the quality of experimental design, statistical analysis and reporting of research using animals

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    For scientific, ethical and economic reasons, experiments involving animals should be appropriately designed, correctly analysed and transparently reported. This increases the scientific validity of the results, and maximises the knowledge gained from each experiment. A minimum amount of relevant information must be included in scientific publications to ensure that the methods and results of a study can be reviewed, analysed and repeated. Omitting essential information can raise scientific and ethical concerns. We report the findings of a systematic survey of reporting, experimental design and statistical analysis in published biomedical research using laboratory animals. Medline and EMBASE were searched for studies reporting research on live rats, mice and non-human primates carried out in UK and US publicly funded research establishments. Detailed information was collected from 271 publications, about the objective or hypothesis of the study, the number, sex, age and/or weight of animals used, and experimental and statistical methods. Only 59% of the studies stated the hypothesis or objective of the study and the number and characteristics of the animals used. Appropriate and efficient experimental design is a critical component of high-quality science. Most of the papers surveyed did not use randomisation (87%) or blinding (86%), to reduce bias in animal selection and outcome assessment. Only 70% of the publications that used statistical methods described their methods and presented the results with a measure of error or variability. This survey has identified a number of issues that need to be addressed in order to improve experimental design and reporting in publications describing research using animals. Scientific publication is a powerful and important source of information; the authors of scientific publications therefore have a responsibility to describe their methods and results comprehensively, accurately and transparently, and peer reviewers and journal editors share the responsibility to ensure that published studies fulfil these criteria

    Camouflage Effects of Various Colour-Marking Morphs against Different Microhabitat Backgrounds in a Polymorphic Pygmy Grasshopper Tetrix japonica

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    Colour-marking polymorphism is widely distributed among cryptic species. To account for the adaptive significance of such polymorphisms, several hypotheses have been proposed to date. Although these hypotheses argue over the degree of camouflage effects of marking morphs (and the interactions between morphs and their microhabitat backgrounds), as far as we know, most empirical evidence has been provided under unnatural conditions (i.e., using artificial prey).Tetrix japonica, a pygmy grasshopper, is highly polymorphic in colour-markings and occurs in both sand and grass microhabitats. Even within a microhabitat, T. japonica is highly polymorphic. Using humans as dummy predators and printed photographs in which various morphs of grasshoppers were placed against different backgrounds, we addressed three questions to test the neutral, background heterogeneity, and differential crypsis hypotheses in four marking-type morphs: 1) do the morphs differ in the degree of crypsis in each microhabitat, 2) are different morphs most cryptic in specific backgrounds of the microhabitats, and 3) does the morph frequency reflect the degree of crypsis?The degree of camouflage differed among the four morphs; therefore, the neutral hypothesis was rejected. Furthermore, the order of camouflage advantage among morphs differed depending on the two types of backgrounds (sand and grass), although the grass background consistently provided greater camouflage effects. Thus, based on our results, we could not reject the background heterogeneity hypothesis. Under field conditions, the more cryptic morphs comprised a minority of the population. Overall, our results demonstrate that the different morphs were not equivalent in the degree of crypsis, but the degree of camouflage of the morphs was not consistent with the morph frequency. These findings suggest that trade-offs exist between the camouflage benefit of body colouration and other fitness components, providing a better understanding of the adaptive significance of colour-markings and presumably supporting the differential crypsis hypothesis

    Perspectives on Enabling Education for Indigenous Students at Three Comprehensive Universities in Regional Australia

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    Daniels, CR ORCiD: 0000-0002-0672-0450Indigenous students, particularly those from regional and remote areas, are under-represented in both higher education and vocational education in Australia. Enabling programs seek to address this under-representation. They offer pathways to higher education, are important in lifting participation rates and potentially encourage mobility between the sectors. However, strategic development of enabling programs is based on little evidence about student or staff experiences. This chapter presents a qualitative research project underpinned by the strengths-based approach of conscientisation, exploring how Indigenous learning journeys via enabling programs can respect and grow cultural identity, while simultaneously developing study skills. The research considered interpretations of ‘success’ from the perspectives of students and teachers participating in enabling courses. The research found that enabling programs were an ‘important’ and ‘exciting journey’ for students that brought about transformation of the inner self through the building of ‘resilience’, ‘strength’, ‘confidence’, ‘self-esteem’, ‘self-worth’, ‘cultural understanding’ and ‘identity’. Success was experienced across multiple dimensions of students’ lived experience including ‘cultural identity’, ‘voice’, self-realisation, self-acceptance and ‘pride’. Staff suggested that enabling programs imparted an ‘underlying layer’ of skills. Recognition of Indigenous people as ‘yarners’ and ‘story tellers’, along with ways of incorporating ‘both-ways’ methodologies, need to be considered when developing the curriculum. This chapter reports on research which will be used to inform the development of a best-practice framework for Indigenous education enabling programs in Australia, particularly in regional and comprehensive education settings

    Phylogenetic Codivergence Supports Coevolution of Mimetic Heliconius Butterflies

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    The unpalatable and warning-patterned butterflies _Heliconius erato_ and _Heliconius melpomene_ provide the best studied example of mutualistic Müllerian mimicry, thought – but rarely demonstrated – to promote coevolution. Some of the strongest available evidence for coevolution comes from phylogenetic codivergence, the parallel divergence of ecologically associated lineages. Early evolutionary reconstructions suggested codivergence between mimetic populations of _H. erato_ and _H. melpomene_, and this was initially hailed as the most striking known case of coevolution. However, subsequent molecular phylogenetic analyses found discrepancies in phylogenetic branching patterns and timing (topological and temporal incongruence) that argued against codivergence. We present the first explicit cophylogenetic test of codivergence between mimetic populations of _H. erato_ and _H. melpomene_, and re-examine the timing of these radiations. We find statistically significant topological congruence between multilocus coalescent population phylogenies of _H. erato_ and _H. melpomene_, supporting repeated codivergence of mimetic populations. Divergence time estimates, based on a Bayesian coalescent model, suggest that the evolutionary radiations of _H. erato_ and _H. melpomene_ occurred over the same time period, and are compatible with a series of temporally congruent codivergence events. This evidence supports a history of reciprocal coevolution between Müllerian co-mimics characterised by phylogenetic codivergence and parallel phenotypic change

    Optical Tastebuds for Water Quality Testing

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    To achieve the UN Sustainable Development Goal of universal access to clean water and sanitation, we need to rethink centralized water systems with global net-zero carbon and sustainability in mind. One approach is to develop scalable off-grid systems that are reliable and easy to use and maintain. A major challenge for such systems is translating the standard laboratory-based monitoring of centralized systems to a more sustainable and scalable model for regularly and routinely monitoring system outputs, which consist of complex mixtures with varying concentrations of molecules and ions in water. Here, we demonstrate a preliminary sensor that, once fully developed, could allow for point-of-use measurements with a single output to monitor. Rather than developing multiple sensors to monitor the levels of each individual component in the water, our label-free, array-based design mimics the biological system of taste. The sensor is comprised of an array of nano-tastebuds made of tailored plasmonic metasurfaces. The combination of different signals from each nano-tastebud to the same sample yields a unique fingerprint for that sample. Through training, these fingerprints build an identification model. By integrating a fully developed sensor into decentralized water systems, we seek to provide non-expert end-users with an easy-to-read output capable of warning of imminent system failures
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