31,655 research outputs found
Incorporation in vivo of 14C-Labelled Amino Acids into the Proteins of Mitochondrial Ribosomes from Neurospora crassa Sensitive to Cycloheximide and Insensitive to Chloramphenicol
Radioactive amino acids were incorporated in vivo into Neurospora crassa cells, and the mitochondrial ribosomes were isolated. The incorporation of radioactivity into the proteins of these ribosomes was inhibited by cycloheximide, but not by chloramphenicol. It is therefore concluded that these proteins are synthesized on the cycloheximide sensitive and chloramphenicol insensitive cytoplasmic ribosomes
Sets of Priors Reflecting Prior-Data Conflict and Agreement
In Bayesian statistics, the choice of prior distribution is often debatable,
especially if prior knowledge is limited or data are scarce. In imprecise
probability, sets of priors are used to accurately model and reflect prior
knowledge. This has the advantage that prior-data conflict sensitivity can be
modelled: Ranges of posterior inferences should be larger when prior and data
are in conflict. We propose a new method for generating prior sets which, in
addition to prior-data conflict sensitivity, allows to reflect strong
prior-data agreement by decreased posterior imprecision.Comment: 12 pages, 6 figures, In: Paulo Joao Carvalho et al. (eds.), IPMU
2016: Proceedings of the 16th International Conference on Information
Processing and Management of Uncertainty in Knowledge-Based Systems,
Eindhoven, The Netherland
Error bounds on block Gauss Seidel solutions of coupled\ud multiphysics problems
Mathematical models in many fields often consist of coupled sub–models, each of which describe a different physical process. For many applications, the quantity of interest from these models may be written as a linear functional of the solution to the governing equations. Mature numerical solution techniques for the individual sub–models often exist. Rather than derive a numerical solution technique for the full coupled model, it is therefore natural to investigate whether these techniques may be used by coupling in a block Gauss–Seidel fashion. In this study, we derive two a posteriori bounds for such linear functionals. These bounds may be used on each Gauss–Seidel iteration to estimate the error in the linear functional computed using the single physics solvers, without actually solving the full, coupled problem. We demonstrate the use of the bound first by using a model problem from linear algebra, and then a linear ordinary differential equation example. We then investigate the effectiveness of the bound using a non–linear coupled fluid–temperature problem. One of the bounds derived is very sharp for most linear functionals considered, allowing us to predict very accurately when to terminate our block Gauss–Seidel iteration.\ud
\ud
Copyright c 2000 John Wiley & Sons, Ltd
{BiQ} Analyzer {HiMod}: An Interactive Software Tool for High-throughput Locus-specific Analysis of 5-Methylcytosine and its Oxidized Derivatives
Recent data suggest important biological roles for oxidative modifications of methylated cytosines, specifically hydroxymethylation, formylation and carboxylation. Several assays are now available for profiling these DNA modifications genome-wide as well as in targeted, locus-specific settings. Here we present BiQ Analyzer HiMod, a user-friendly software tool for sequence alignment, quality control and initial analysis of locus-specific DNA modification data. The software supports four different assay types, and it leads the user from raw sequence reads to DNA modification statistics and publication-quality plots. BiQ Analyzer HiMod combines well-established graphical user interface of its predecessor tool, BiQ Analyzer HT, with new and extended analysis modes. BiQ Analyzer HiMod also includes updates of the analysis workspace, an intuitive interface, a custom vector graphics engine and support of additional input and output data formats. The tool is freely available as a stand-alone installation package from http://biq-analyzer-himod.bioinf.mpi-inf.mpg.de/
Interpretation of neutrino flux limits from neutrino telescopes on the Hillas plot
We discuss the interplay between spectral shape and detector response beyond
a simple E^-2 neutrino flux at neutrino telescopes, at the example of
time-integrated point source searches using IceCube-40 data. We use a
self-consistent model for the neutrino production, in which protons interact
with synchrotron photons from co-accelerated electrons, and we fully take into
account the relevant pion and kaon production modes, the flavor composition at
the source, flavor mixing, and magnetic field effects on the secondaries
(pions, muon, and kaons). Since some of the model parameters can be related to
the Hillas parameters R (size of the acceleration region) and B (magnetic
field), we relate the detector response to the Hillas plane. In order to
compare the response to different spectral shapes, we use the energy flux
density as a measure for the pion production efficiency times luminosity of the
source. We demonstrate that IceCube has a very good reach in this quantity for
AGN nuclei and jets for all source declinations, while the spectra of sources
with strong magnetic fields are found outside the optimal reach. We also
demonstrate where neutrinos from kaon decays and muon tracks from tau decays
can be relevant for the detector response. Finally, we point out the
complementarity between IceCube and other experiments sensitive to high-energy
neutrinos, at the example of 2004-2008 Earth-skimming neutrino data from Auger.
We illustrate that Auger, in principle, is better sensitive to the parameter
region in the Hillas plane from which the highest-energetic cosmic rays may be
expected in this model.Comment: 28 pages, 10 figures. Substantial clarifications, such as on
definition of "sensitivity" and model descriptio
Computer Simulation Study of the Phase Behavior and Structural Relaxation in a Gel-Former Modeled by Three Body Interactions
We report a computer simulation study of a model gel-former obtained by
modifying the three-body interactions of the Stillinger-Weber potential for
silicon. This modification reduces the average coordination number and
consequently shifts the liquid-gas phase coexistence curve to low densities,
thus facilitating the formation of gels without phase separation. At low
temperatures and densities, the structure of the system is characterized by the
presence of long linear chains interconnected by a small number of three
coordinated junctions at random locations. At small wave-vectors the static
structure factor shows a non-monotonic dependence on temperature, a behavior
which is due to the competition between the percolation transition of the
particles and the stiffening of the formed chains. We compare in detail the
relaxation dynamics of the system as obtained from molecular dynamics with the
one obtained from Monte Carlo dynamics. We find that the bond correlation
function displays stretched exponential behavior at moderately low temperatures
and densities, but exponential relaxation at low temperatures. The bond
lifetime shows an Arrhenius behavior, independent of the microscopic dynamics.
For the molecular dynamics at low temperatures, the mean squared displacement
and the (coherent and incoherent) intermediate scattering function display at
intermediate times a dynamics with ballistic character and we show that this
leads to compressed exponential relaxation. For the Monte Carlo dynamics we
find always an exponential or stretched exponential relaxation. Thus we
conclude that the compressed exponential relaxation observed in experiments is
due to the out-of-equilibrium dynamics
Transient excitation and data processing techniques employing the fast fourier transform for aeroelastic testing
The development of testing techniques useful in airplane ground resonance testing, wind tunnel aeroelastic model testing, and airplane flight flutter testing is presented. Included is the consideration of impulsive excitation, steady-state sinusoidal excitation, and random and pseudorandom excitation. Reasons for the selection of fast sine sweeps for transient excitation are given. The use of the fast fourier transform dynamic analyzer (HP-5451B) is presented, together with a curve fitting data process in the Laplace domain to experimentally evaluate values of generalized mass, model frequencies, dampings, and mode shapes. The effects of poor signal to noise ratios due to turbulence creating data variance are discussed. Data manipulation techniques used to overcome variance problems are also included. The experience is described that was gained by using these techniques since the early stages of the SST program. Data measured during 747 flight flutter tests, and SST, YC-14, and 727 empennage flutter model tests are included
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