Risks of dam construction for South American river dolphins : a case study of the Tapajós River

Funding: This study was funded by the Ministério da Ciência, Tecnologia e Inovação (MCTI) through Mamirauá Institute for Sustainable Development, with support from the Omacha Foundation (Colombia) and Whitley Fund for Nature.River dolphins are strongly affected by the construction of hydroelectric dams. Potential isolation in subpopulations above and below such dams and the resulting low genetic variability of these subpopulations can cause extinction at a local level. Here we aimed to estimate density and population size of South American river dolphins (boto Inia geoffrensis and tucuxi Sotalia fluviatilis), map their distribution, and estimate potential biological removal (PBR) limits in order to evaluate the effects of population fragmentation between planned dams in the Tapajós River, Amazonian basin, Brazil. Boat-based surveys were conducted following a line transect sampling protocol covering different dolphin habitats in 2 stretches of the river divided by rapids. The mark-recapture distance sampling method was applied to account for animals missed on the trackline. After the estimation of population sizes by habitat, PBR was calculated. The farthest upriver sighting of tucuxis was close to the São Luiz do Tapajós rapids, whereas the farthest upriver sighting of botos was upstream of the rapids, suggesting that botos move upstream through the rapids. Estimated abundance of tucuxis (3372 ind., CV = 0.38) was twice as high as that estimated for botos (1815 ind., CV = 0.4). The PBR ranged from 11 to 18 ind. for boto and 21 to 34 for tucuxi. Throughout this study, we identified low abundances of river dolphins compared to other Amazon rivers. Boto may not be sustainable at a population level, due primarily to population fragmentation which would result from the construction of the proposed dams. Precautionary measures are urgently needed before construction of dams begins in the Tapajós River.Publisher PDFPeer reviewe

Challenges and priorities for river cetacean conservation

River cetaceans are particularly vulnerable to anthropogenic impacts due to their constrained ranges in freshwater systems of China, South Asia, and South America. We undertook an exhaustive review of 280 peer-reviewed papers and grey literature reports (1998-2020) to examine the current status of knowledge regarding these cetaceans and their conservation. We aimed to better understand the scale of threats they face, and to identify and propose priority future efforts to better conserve these species. We found that the species have been studied with varying frequency and that most of the research on threats has focused on habitat degradation and fragmentation (43%, mainly driven by dams and extractive activities such as sand mining and deforestation), and fishery interactions (39%, in the form of bycatch and direct take). These threats occur across all species, but more information is needed, primarily on quantifying the population impacts as a basis for designing mitigation measures. Other threats identified include pollution, vessel collisions, traditional use, and poorly managed tourism. Emerging methods such as environmental DNA and unmanned aerial vehicles are described for studying these species. Promising conservation interventions include cetacean-specific protected areas, natural ex situ protection, community-led conservation, and education programmes. However, transnational political will is required for a step change towards broad-scale protection in freshwater environments. In addition, we propose increasing capacity building, developing management plans, working closely with fishing communities, enhancing public awareness, expanding regional collaborations, and diversifying funding

Amazonia Camtrap: a data set of mammal, bird, and reptile species recorded with camera traps in the Amazon forest.

Abstract : The Amazon forest has the highest biodiversity on Earth. However, information on Amazonian vertebrate diversity is still deficient and scatteredacross the published, peer-reviewed, and gray literature and in unpublishedraw data. Camera traps are an effective non-invasive method of surveying vertebrates, applicable to different scales of time and space. In this study, we organized and standardized camera trap records from different Amazonregions to compile the most extensive data set of inventories of mammal,bird, and reptile species ever assembled for the area. The complete data setcomprises 154,123 records of 317 species (185 birds, 119 mammals, and13 reptiles) gathered from surveys from the Amazonian portion of eightcountries (Brazil, Bolivia, Colombia, Ecuador, French Guiana, Peru,Suriname, and Venezuela). The most frequently recorded species per taxawere: mammals:Cuniculus paca (11,907 records); birds: Pauxi tuberosa (3713 records); and reptiles:Tupinambis teguixin(716 records). The infor-mation detailed in this data paper opens up opportunities for new ecological studies at different spatial and temporal scales, allowing for a moreaccurate evaluation of the effects of habitat loss, fragmentation, climatechange, and other human-mediated defaunation processes in one of themost important and threatened tropical environments in the world. The data set is not copyright restricted; please cite this data paper when usingits data in publications and we also request that researchers and educator sinform us of how they are using these data

Risks of dam construction for South American river dolphins:a case study of the Tapajós River

River dolphins are strongly affected by the construction of hydroelectric dams. Potential isolation in subpopulations above and below such dams and the resulting low genetic variability of these subpopulations can cause extinction at a local level. Here we aimed to estimate density and population size of South American river dolphins (boto Inia geoffrensis and tucuxi Sotalia fluviatilis), map their distribution, and estimate potential biological removal (PBR) limits in order to evaluate the effects of population fragmentation between planned dams in the Tapajós River, Amazonian basin, Brazil. Boat-based surveys were conducted following a line transect sampling protocol covering different dolphin habitats in 2 stretches of the river divided by rapids. The mark-recapture distance sampling method was applied to account for animals missed on the trackline. After the estimation of population sizes by habitat, PBR was calculated. The farthest upriver sighting of tucuxis was close to the São Luiz do Tapajós rapids, whereas the farthest upriver sighting of botos was upstream of the rapids, suggesting that botos move upstream through the rapids. Estimated abundance of tucuxis (3372 ind., CV = 0.38) was twice as high as that estimated for botos (1815 ind., CV = 0.4). The PBR ranged from 11 to 18 ind. for boto and 21 to 34 for tucuxi. Throughout this study, we identified low abundances of river dolphins compared to other Amazon rivers. Boto may not be sustainable at a population level, due primarily to population fragmentation which would result from the construction of the proposed dams. Precautionary measures are urgently needed before construction of dams begins in the Tapajós River

Interest of minigene splicing reporter assay in familial hypobetalipoproteinemia genetic diagnosis: the example of the missense mutation APOB c.1468C\textgreaterT

International audienceNo abstract availabl

Pseudohyponatremia: interference of hyperglycemia on indirect potentiometry

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Mitochondrial DNA diversity, differentiation and phylogeography of the South American riverine and coastal dolphins Sotalia fluviatilis and Sotalia guianensis.

Here we consider the phylogeography and population structure of the South American coastal and riverine dolphins, Sotalia guianensis and Sotalia fluviatilis, based on samples (n = 76) collected across more than 9000km of the species distribution. Phylogenetic reconstruction of 31 distinct haplotypes based on a combined analysis of two mitochondrial gene fragments (1052bp) revealed clear genetic differences between riverine and coastal individuals consistent with species-level ranking. Within the coastal species, a spatial analysis of molecular variance of the control region sequences showed significant regional population differentiation (FST = 0.4; FST = 0.6; P<0.001). The highest mitochondrial diversity among costal population units was found along the Caribbean Coast of Colombia and Venezuela. The genetic distinctiveness of the Maracaibo Lake (Venezuela) population has conservation implications regarding the threats faced by the animals in this region, including oil exploitation. Brazilian populations of Sotalia showed the lowest mitochondrial diversity and differentiation among the coastal species warranting further investigation. The Amazonian populations showed the highest mitochondrial diversity overall, suggesting a surprisingly large effective population size (Nef) and relatively high female gene flow throughout the sampled regions of the main river and its tributaries. From our results, at least two different conservation strategies need to be developed for each of the proposed sister-species. For the coastal groups, characterized by restricted gene flow and very localized populations along the Caribbean and Atlantic Coast of South America, it is advisable to work at a local level in order to improve the fishing practices and prevent frequent dolphin entanglement in nets. For the Amazonian groups, priority must be given to maintain the connectivity detected between regions. Obstacles to connectivity, including hydroelectric and dam construction, as well as excessive boat traffic, could affect the future of these populations