1,237 research outputs found
Efficiency of encounter-controlled reaction between diffusing reactants in a finite lattice: topology and boundary effects
The role of dimensionality (Euclidean versus fractal), spatial extent,
boundary effects and system topology on the efficiency of diffusion-reaction
processes involving two simultaneously-diffusing reactants is analyzed. We
present numerically-exact values for the mean time to reaction, as gauged by
the mean walklength before reactive encounter, obtained via application of the
theory of finite Markov processes, and via Monte Carlo simulation. As a general
rule, we conclude that for sufficiently large systems, the efficiency of
diffusion-reaction processes involving two synchronously diffusing reactants
(two-walker case) relative to processes in which one reactant of a pair is
anchored at some point in the reaction space (one walker plus trap case) is
higher, and is enhanced the lower the dimensionality of the system. This
differential efficiency becomes larger with increasing system size and, for
periodic systems, its asymptotic value may depend on the parity of the lattice.
Imposing confining boundaries on the system enhances the differential
efficiency relative to the periodic case, while decreasing the absolute
efficiencies of both two-walker and one walker plus trap processes. Analytic
arguments are presented to provide a rationale for the results obtained. The
insights afforded by the analysis to the design of heterogeneous catalyst
systems are also discussed.Comment: 15 pages, 8 figures, uses revtex4, accepted for publication in
Physica
Polyelectrolyte Bundles
Using extensive Molecular Dynamics simulations we study the behavior of
polyelectrolytes with hydrophobic side chains, which are known to form
cylindrical micelles in aqueous solution. We investigate the stability of such
bundles with respect to hydrophobicity, the strength of the electrostatic
interaction, and the bundle size. We show that for the parameter range relevant
for sulfonated poly-para-phenylenes (PPP) one finds a stable finite bundle
size. In a more generic model we also show the influence of the length of the
precursor oligomer on the stability of the bundles. We also point out that our
model has close similarities to DNA solutions with added condensing agents,
hinting to the possibility that the size of DNA aggregates is under certain
circumstances thermodynamically limited.Comment: 10 pages, 8 figure
Stress Induced Protein Changes in Tall Fescue
Tall fescue (Festuca arundinacea Schreb.), the most important pasture grass in Arkansas, exhibits different agricultural properties when it is infected by its mutualistic endophyte Acremonium coenophialum Morgan-Jones and Gams. We postulate that the presence of endophyte exerts a stress on the host that enhances or detracts from the host\u27s ability to express specific genes. We tested this hypothesis by heat stressing infected and non-infected, juvenile and mature tall fescue, and examining their protein profiles by SDS-PAGE analysis. The results indicate that mature, infected, stressed grass produced greater amounts of Rubisco (ribulose bisphosphate carboxylase-oxygenase) than all other treatments. Additionally, the mature, infected, stressed grass exhibited a 20 k Dalton protein band which was not apparent in other treatments. These observations support the possibility that the endophyte prestresses the grass, and they suggest a molecular mechanism for this response
Real-time detection of Fe·EDTA/H2O2-induced DNA cleavage by linear dichroism
The conditions for the measurement of linear dichroism (LD) can be adjusted so as to solely reflect the length and the flexibility of DNA. The real-time detection of the EDTA·Fe2+-induced oxidative cleavage of double-stranded native and synthetic DNAs was performed using LD. The decrease in the magnitude of the LD at 260 nm, which reflects an increase in the flexibility and a decrease in the length of the DNA, can be described by the sum of two or three exponential curves in relation to the EDTA·Fe2+ concentration. The fast component was assigned to the cleavage of one of the double strands, inducing an increase in the flexibility, while the other slower component was assigned to the cleavage of the double strand, resulting in the shortening of DNA. The decrease in the magnitude of the LD of poly[d(A-T)2] was similar to that of poly[d(I-C)2], while that of poly[d(G-C)2] was found to be the slowest, indicating that the resistance of poly[d(G-C)2] against the Fenton-type reagent was the strongest. This observation suggests that the amine group in the minor groove of the double helix may play an important role in slowing the EDTA·Fe2+-induced oxidative cleavage
In Vitro Evaluation of the Toxicological Profile and Oxidative Stress of Relevant Diet-Related Advanced Glycation End Products and Related 1,2-Dicarbonyls
During food processing and storage, and in tissues and fluids under physiological conditions, the Maillard reaction occurs. During this reaction, reactive 1,2-dicarbonyl compounds arise as intermediates that undergo further reactions to form advanced glycation end products (AGEs). Diet is the primary source of exogenous AGEs. Endogenously formed AGEs have been proposed as a risk factor in the pathogenesis of diet-related diseases such as diabetes, insulin resistance, cardiovascular diseases, or chronic disease. AGEs may differently contribute to the diet-related exacerbation of oxidative stress, inflammation, and protein modifications. Here, to understand the contribution of each compound, we tested individually, for the first time, the effect of five 1,2-dicarbonyl compounds 3-deoxyglucosone (3-DG), 3-deoxygalactosone (3-DGal), 3,4-dideoxyglucosone-3-ene (3,4-DGE), glyoxal (GO), and methylglyoxal (MGO) and four different glycated amino acids N-ε-(carboxyethyl)lysine (CEL), N-ε-(carboxymethyl)lysine (CML), methylglyoxal-derived hydroimidazolone-1 (MG-H1), and pyrraline (Pyrr) in a cell line of human keratinocytes (HaCaT). We found that most of the glycated amino acids, i.e., CEL, CML, and MG-H1, did not show any cytotoxicity. At the same time, 1,2-dicarbonyl compounds 3-DGal, 3,4-DGE, GO, and MGO increased the production of reactive oxygen species and induced cell death. MGO induced cell death by apoptosis, whereas 3-DGal and 3,4-DGE induced nuclear translocation of the proinflammatory NF-κB transcription pathway, and the activation of the pyroptosis-related NLRP3 inflammasome cascade. Overall, these results demonstrate the higher toxic impact of 1,2-dicarbonyl compounds on mucosal epithelial cells when compared to glycated amino acids and the selective activation of intracellular signaling pathways involved in the crosstalk mechanisms linking oxidative stress to excessive inflammation
Tropenökologische Forschung in der Zusammenarbeit zwischen Deutschland und Brasilien: die Entwicklung der letzten 20 Jahre
- …