470 research outputs found
Demographic characteristics of exploited tropical lutjanids: a comparative analysis
Demographic parameters from seven exploited coral reef lutjanid species were compared as a case study of the implications of intrafamily variation in life histories for
multispecies harvest management. Modal lengths varied by 4 cm among four species (Lutjanus fulviflamma, L. vitta, L. carponotatus, L. adetii), which were at least 6 cm smaller than the modal lengths of the largest species (L. gibbus, Symphorus nematophorus, Aprion virescens). Modal ages, indicating ages of full selection to fishing gear, were 10 years or less for all species, but maximum ages ranged from
12 (L. gibbus) to 36 years (S. nematophorus). Each species had a unique growth pattern, with differences in length-at-age and mean asymptotic fork length (Lâ), but smaller species generally grew fast during the first 1â2 years of life and larger species grew more slowly over a longer period. Total mortality rates varied among species; L. gibbus had the highest mortality and L. fulviflamma, the
lowest mortality. The variability in life history strategies of these tropical lutjanids makes generalizations about lutjanid life histories difficult, but the fact that all seven had characteristics that would make them particularly vulnerable to fishing indicates that
harvest of tropical lutjanids should be managed with caution
Bridged beta(3)-Peptide Inhibitors of p53-hDM2 Complexation: Correlation between Affinity and Cell Permeability
ÎČ-peptides possess several features that are desirable in peptidomimetics; they are easily synthesized, fold into stable secondary structures in physiologic buffers, and resist proteolysis. They can also bind to a diverse array of proteins to inhibit their interactions with αâhelical ligands. ÎČâpeptides are not usually cell permeable, however, and this feature limits their utility as research tools and potential therapeutics. Appending an Arg(8) sequence to a ÎČâpeptide improves uptake but adds considerable mass. We reported that embedding a small cationic patch within a PPII, αâ or ÎČâpeptide helix improves uptake without the addition of significant mass. In another mass-neutral strategy, Verdine, Walensky, and others have reported that insertion of a hydrocarbon bridge between the i and i+4 positions of an αâhelix also increases cell uptake. Here we describe a series of ÎČâpeptides containing diether and hydrocarbon bridges and compare them on the basis of cell uptake and localization, affinities for hDM2, and 14-helix structure. Our results highlight the relative merits of cationic patch and hydrophobic bridge strategies for improving ÎČâpeptide uptake and identify a surprising correlation between uptake efficiency and hDM2 affinity
First bounds on the very high energy gamma-ray emission from Arp 220
Using the Major Atmospheric Gamma Imaging Cherenkov Telescope (MAGIC), we
have observed the nearest ultra-luminous infrared galaxy Arp 220 for about 15
hours. No significant signal was detected within the dedicated amount of
observation time. The first upper limits to the very high energy -ray
flux of Arp 220 are herein reported and compared with theoretical expectations.Comment: Accepted for publication in Ap
Constraints on the steady and pulsed very high energy gamma-ray emission from observations of PSR B1951+32/CTB 80 with the MAGIC Telescope
We report on very high energy gamma-observations with the MAGIC Telescope of
the pulsar PSR B1951+32 and its associated nebula, CTB 80. Our data constrain
the cutoff energy of the pulsar to be less than 32 GeV, assuming the pulsed
gamma-ray emission to be exponentially cut off. The upper limit on the flux of
pulsed gamma-ray emission above 75 GeV is 4.3*10^-11 photons cm^-2 sec^-1, and
the upper limit on the flux of steady emission above 140 GeV is 1.5*10^-11
photons cm^-2 sec^-1. We discuss our results in the framework of recent model
predictions and other studies.Comment: 7 pages, 7 figures, replaced with published versio
Discovery of Very High Energy gamma-rays from 1ES 1011+496 at z=0.212
We report on the discovery of Very High Energy (VHE) gamma-ray emission from
the BL Lacertae object 1ES1011+496. The observation was triggered by an optical
outburst in March 2007 and the source was observed with the MAGIC telescope
from March to May 2007. Observing for 18.7 hr we find an excess of 6.2 sigma
with an integrated flux above 200 GeV of (1.58 photons
cm s. The VHE gamma-ray flux is >40% higher than in March-April
2006 (reported elsewhere), indicating that the VHE emission state may be
related to the optical emission state. We have also determined the redshift of
1ES1011+496 based on an optical spectrum that reveals the absorption lines of
the host galaxy. The redshift of z=0.212 makes 1ES1011+496 the most distant
source observed to emit VHE gamma-rays up to date.Comment: 4 pages, 6 figures, minor changes to fit the ApJ versio
MAGIC upper limits on the very high energy emission from GRBs
The fast repositioning system of the MAGIC Telescope has allowed during its
first data cycle, between 2005 and the beginning of year 2006, observing nine
different GRBs as possible sources of very high energy gammas. These
observations were triggered by alerts from Swift, HETE-II, and Integral; they
started as fast as possible after the alerts and lasted for several minutes,
with an energy threshold varying between 80 and 200 GeV, depending upon the
zenith angle of the burst. No evidence for gamma signals was found, and upper
limits for the flux were derived for all events, using the standard analysis
chain of MAGIC. For the bursts with measured redshift, the upper limits are
compatible with a power law extrapolation, when the intrinsic fluxes are
evaluated taking into account the attenuation due to the scattering in the
Metagalactic Radiation Field (MRF).Comment: 25 pages, 9 figures, final version accepted by ApJ. Changet title to
"MAGIC upped limits on the VERY high energy emission from GRBs", re-organized
chapter with description of observation, removed non necessaries figures,
added plot of effective area depending on zenith angle, added an appendix
explaining the upper limit calculation, added some reference
In Silico Improvement of beta(3)-Peptide Inhibitors of p53 center dot hDM2 and p53 center dot hDMX
There is great interest in molecules capable of inhibiting the interactions between p53 and its negative regulators hDM2 and hDMX, as these molecules have validated potential against cancers in which one or both oncoproteins are overexpressed. We reported previously that appropriately substituted ÎČ(3)-peptides inhibit these interactions and, more recently, that minimally cationic ÎČ(3)-peptides are sufficiently cell permeable to upregulate p53-dependent genes in live cells. These observations, coupled with the known stability of ÎČ-peptides in a cellular environment, and the recently reported structures of hDM2 and hDMX, motivated us to exploit computational modeling to identify ÎČ-peptides with improved potency and/or selectivity. This exercise successfully identified a new ÎČ(3)-peptide, ÎČ53-16, that possesses the highly desirable attribute of high affinity for both hDM2 as well as hDMX and identifies the 3,4-dichlorophenyl moiety as a novel determinant of hDMX affinity. [Image: see text
Systematic search for VHE gamma-ray emission from X-ray bright high-frequency BL Lac objects
All but three (M87, BL Lac and 3C 279) extragalactic sources detected so far
at very high energy (VHE) gamma-rays belong to the class of high-frequency
peaked BL Lac (HBL) objects. This suggested to us a systematic scan of
candidate sources with the MAGIC telescope, based on the compilation of X-ray
blazars by Donato et al. (2001). The observations took place from December 2004
to March 2006 and cover sources on the northern sky visible under small zenith
distances zd < 30 degrees at culmination. The sensitivity of the search was
planned for detecting X-ray bright F(1 keV) > 2 uJy) sources emitting at least
the same energy flux at 200 GeV as at 1 keV. In order to avoid strong gamma-ray
attenuation close to the energy threshold, the redshift of the sources was
constrained to values z<0.3. Of the fourteen sources observed, 1ES 1218+304 and
1ES 2344+514 have been detected in addition to the known bright TeV blazars Mrk
421 and Mrk 501. A marginal excess of 3.5 sigma from the position of 1ES
1011+496 was observed and has been confirmed as a source of VHE gamma-rays by a
second MAGIC observation triggered by a high optical state (Albert et al.
2007). For the remaining sources, we present here the 99% confidence level
upper limits on the integral flux above ~200 GeV. We characterize the sample of
HBLs (including all HBLs detected at VHE so far) by looking for correlations
between their multi-frequency spectral indices determined from simultaneous
optical, archival X-ray, and radio luminosities, finding that the VHE emitting
HBLs do not seem to constitute a unique subclass. The absorption corrected
gamma-ray luminosities at 200 GeV of the HBLs are generally not higher than
their X-ray luminosities at 1 keV.Comment: 15 pages, 7 figures, 5 tables, submitted to ApJ (revised version
Compounds from an Unbiased Chemical Screen Reverse Both Er-to-Golgi Trafficking Defects and Mitochondrial Dysfunction in Parkinson's Disease Models
α-Synuclein (α-syn) is a small lipid-binding protein involved in vesicle trafficking whose function is poorly characterized. It is of great interest to human biology and medicine because α-syn dysfunction is associated with several neurodegenerative disorders, including Parkinsonâs disease (PD). We previously created a yeast model of α-syn pathobiology, which established vesicle trafficking as a process that is particularly sensitive to α-syn expression. We also uncovered a core group of proteins with diverse activities related to α-syn toxicity that is conserved from yeast to mammalian neurons. Here, we report that a yeast strain expressing a somewhat higher level of α-syn also exhibits strong defects in mitochondrial function. Unlike our previous strain, genetic suppression of endoplasmic reticulum (ER)-to-Golgi trafficking alone does not suppress α-syn toxicity in this strain. In an effort to identify individual compounds that could simultaneously rescue these apparently disparate pathological effects of α-syn, we screened a library of 115,000 compounds. We identified a class of small molecules that reduced α-syn toxicity at micromolar concentrations in this higher toxicity strain. These compounds reduced the formation of α-syn foci, re-established ER-to-Golgi trafficking and ameliorated α-syn-mediated damage to mitochondria. They also corrected the toxicity of α-syn in nematode neurons and in primary rat neuronal midbrain cultures. Remarkably, the compounds also protected neurons against rotenone-induced toxicity, which has been used to model the mitochondrial defects associated with PD in humans. That single compounds are capable of rescuing the diverse toxicities of α-syn in yeast and neurons suggests that they are acting on deeply rooted biological processes that connect these toxicities and have been conserved for a billion years of eukaryotic evolution. Thus, it seems possible to develop novel therapeutic strategies to simultaneously target the multiple pathological features of PD.MGH/MIT Morris Udall Center of Excellence in Parkinson Disease Research (NS038372)Michael J. Fox Foundation for Parkinson's ResearchHoward Hughes Medical InstituteUnited States. National Institutes of Health (NS049221)American Parkinson Disease Association, Inc
Implementation of the Random Forest Method for the Imaging Atmospheric Cherenkov Telescope MAGIC
The paper describes an application of the tree classification method Random
Forest (RF), as used in the analysis of data from the ground-based gamma
telescope MAGIC. In such telescopes, cosmic gamma-rays are observed and have to
be discriminated against a dominating background of hadronic cosmic-ray
particles. We describe the application of RF for this gamma/hadron separation.
The RF method often shows superior performance in comparison with traditional
semi-empirical techniques. Critical issues of the method and its implementation
are discussed. An application of the RF method for estimation of a continuous
parameter from related variables, rather than discrete classes, is also
discussed.Comment: 16 pages, 8 figure
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