15 research outputs found

    Automatically Proving and Disproving Feasibility Conditions

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    [EN] In the realm of term rewriting, given terms s and t, a reachability condition s>>t is called feasible if there is a substitution O such that O(s) rewrites into O(t) in zero or more steps; otherwise, it is called infeasible. Checking infeasibility of (sequences of) reachability conditions is important in the analysis of computational properties of rewrite systems like confluence or (operational) termination. In this paper, we generalize this notion of feasibility to arbitrary n-ary relations on terms defined by first-order theories. In this way, properties of computational systems whose operational semantics can be given as a first-order theory can be investigated. We introduce a framework for proving feasibility/infeasibility, and a new tool, infChecker, which implements it.Supported by EU (FEDER), and projects RTI2018-094403-B-C32, PROMETEO/2019/098, and SP20180225. Also by INCIBE program "Ayudas para la excelencia de los equipos de investigación avanzada en ciberseguridad" (Raul Gutiérrez).Gutiérrez Gil, R.; Lucas Alba, S. (2020). Automatically Proving and Disproving Feasibility Conditions. Springer Nature. 416-435. https://doi.org/10.1007/978-3-030-51054-1_27S416435Andrianarivelo, N., Réty, P.: Over-approximating terms reachable by context-sensitive rewriting. In: Bojańczyk, M., Lasota, S., Potapov, I. (eds.) RP 2015. LNCS, vol. 9328, pp. 128–139. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24537-9_12Dershowitz, N.: Termination of rewriting. J. Symb. Comput. 3(1/2), 69–116 (1987). https://doi.org/10.1016/S0747-7171(87)80022-6Giesl, J., Thiemann, R., Schneider-Kamp, P., Falke, S.: Mechanizing and improving dependency pairs. J. Autom. Reasoning 37(3), 155–203 (2006). https://doi.org/10.1007/s10817-006-9057-7Goguen, J.A., Meseguer, J.: Models and equality for logical programming. In: Ehrig, H., Kowalski, R., Levi, G., Montanari, U. (eds.) TAPSOFT 1987. LNCS, vol. 250, pp. 1–22. Springer, Heidelberg (1987). https://doi.org/10.1007/BFb0014969Gutiérrez, R., Lucas, S.: Automatic generation of logical models with AGES. In: Fontaine, P. (ed.) CADE 2019. LNCS (LNAI), vol. 11716, pp. 287–299. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-29436-6_17Kojima, Y., Sakai, M.: Innermost reachability and context sensitive reachability properties are decidable for linear right-shallow term rewriting systems. In: Voronkov, A. (ed.) RTA 2008. LNCS, vol. 5117, pp. 187–201. Springer, Heidelberg (2008). https://doi.org/10.1007/978-3-540-70590-1_13Kojima, Y., Sakai, M., Nishida, N., Kusakari, K., Sakabe, T.: Context-sensitive innermost reachability is decidable for linear right-shallow term rewriting systems. Inf. Media Technol. 4(4), 802–814 (2009)Kojima, Y., Sakai, M., Nishida, N., Kusakari, K., Sakabe, T.: Decidability of reachability for right-shallow context-sensitive term rewriting systems. IPSJ Online Trans. 4, 192–216 (2011)Lucas, S.: Analysis of rewriting-based systems as first-order theories. In: Fioravanti, F., Gallagher, J.P. (eds.) LOPSTR 2017. LNCS, vol. 10855, pp. 180–197. Springer, Cham (2018). https://doi.org/10.1007/978-3-319-94460-9_11Lucas, S.: Context-sensitive computations in functional and functional logic programs. J. Funct. Logic Program. 1998(1) (1998). http://danae.uni-muenster.de/lehre/kuchen/JFLP/articles/1998/A98-01/A98-01.htmlLucas, S.: Proving semantic properties as first-order satisfiability. Artif. Intell. 277 (2019). https://doi.org/10.1016/j.artint.2019.103174Lucas, S.: Using well-founded relations for proving operational termination. J. Autom. Reasoning 64(2), 167–195 (2019). https://doi.org/10.1007/s10817-019-09514-2Lucas, S., Gutiérrez, R.: Use of logical models for proving infeasibility in term rewriting. Inf. Process. Lett. 136, 90–95 (2018). https://doi.org/10.1016/j.ipl.2018.04.002Lucas, S., Marché, C., Meseguer, J.: Operational termination of conditional term rewriting systems. Inf. Process. Lett. 95(4), 446–453 (2005). https://doi.org/10.1016/j.ipl.2005.05.002Lucas, S., Meseguer, J.: Proving operational termination of declarative programs in general logics. In: Chitil, O., King, A., Danvy, O. (eds.) Proceedings of the 16th International Symposium on Principles and Practice of Declarative Programming, Kent, Canterbury, United Kingdom, 8–10 September 2014, pp. 111–122. ACM (2014). https://doi.org/10.1145/2643135.2643152Lucas, S., Meseguer, J., Gutiérrez, R.: The 2D dependency pair framework for conditional rewrite systems. Part I: definition and basic processors. J. Comput. Syst. Sci. 96, 74–106 (2018). https://doi.org/10.1016/j.jcss.2018.04.002Lucas, S., Meseguer, J., Gutiérrez, R.: The 2D dependency pair framework for conditional rewrite systems—Part II: advanced processors and implementation techniques. J. Autom. Reasoning (2020, in press)McCune, W.: Prover9 and Mace4. https://www.cs.unm.edu/~mccune/mace4/Meßner, F., Sternagel, C.: nonreach – a tool for nonreachability analysis. In: Vojnar, T., Zhang, L. (eds.) TACAS 2019. LNCS, vol. 11427, pp. 337–343. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-17462-0_19Middeldorp, A., Nagele, J., Shintani, K.: Confluence competition 2019. In: Beyer, D., Huisman, M., Kordon, F., Steffen, B. (eds.) TACAS 2019. LNCS, vol. 11429, pp. 25–40. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-17502-3_2Nishida, N., Maeda, Y.: Narrowing trees for syntactically deterministic conditional term rewriting systems. In: Kirchner, H. (ed.) Proceedings of the 3rd International Conference on Formal Structures for Computation and Deduction. FSCD 2018. Leibniz International Proceedings in Informatics (LIPIcs), vol. 108, pp. 26:1–26:20. Schloss Dagstuhl-Leibniz-Zentrum fuer Informatik (2018). https://doi.org/10.4230/LIPIcs.FSCD.2018.26Ohlebusch, E.: Advanced Topics in Term Rewriting. Springer, Heidelberg (2002). http://www.springer.com/computer/swe/book/978-0-387-95250-5Prawitz, D.: Natural Deduction: A Proof-Theoretical Study. Dover, New York (2006)Sternagel, C., Sternagel, T., Middeldorp, A.: CoCo 2018 Participant: ConCon 1.5. In: Felgenhauer, B., Simonsen, J. (eds.) Proceedings of the 7th International Workshop on Confluence. IWC 2018, p. 66 (2018). http://cl-informatik.uibk.ac.at/events/iwc-2018/Sternagel, C., Yamada, A.: Reachability analysis for termination and confluence of rewriting. In: Vojnar, T., Zhang, L. (eds.) TACAS 2019. LNCS, vol. 11427, pp. 262–278. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-17462-0_15Winkler, S., Moser, G.: MædMax: a maximal ordered completion tool. In: Galmiche, D., Schulz, S., Sebastiani, R. (eds.) IJCAR 2018. LNCS (LNAI), vol. 10900, pp. 472–480. Springer, Cham (2018). https://doi.org/10.1007/978-3-319-94205-6_3

    Metabolic implication of tigecycline as an efficacious second-line treatment for sorafenib-resistant hepatocellular carcinoma

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    Sorafenib represents the current standard of care for patients with advanced-stage hepatocellular carcinoma (HCC). However, acquired drug resistance occurs frequently during therapy and is accompanied by rapid tumor regrowth after sorafenib therapy termination. To identify the mechanism of this therapy-limiting growth resumption, we established robust sorafenib resistance HCC cell models that exhibited mitochondrial dysfunction and chemotherapeutic crossresistance. We found a rapid relapse of tumor cell proliferation after sorafenib withdrawal, which was caused by renewal of mitochondrial structures alongside a metabolic switch toward high electron transport system (ETS) activity. The translation-inhibiting antibiotic tigecycline impaired the biogenesis of mitochondrial DNA-encoded ETS subunits and limited the electron acceptor turnover required for glutamine oxidation. Thereby, tigecycline prevented the tumor relapse in vitro and in murine xenografts in vivo. These results offer a promising second-line therapeutic approach for advanced-stage HCC patients with progressive disease undergoing sorafenib therapy or treatment interruption due to severe adverse events

    Small molecule inhibitors of the mitochondrial ClpXP protease possess cytostatic potential and re-sensitize chemo-resistant cancers.

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    The human mitochondrial ClpXP protease complex (HsClpXP) has recently attracted major attention as a target for novel anti-cancer therapies. Despite its important role in disease progression, the cellular role of HsClpXP is poorly characterized and only few small molecule inhibitors have been reported. Herein, we screened previously established S. aureus ClpXP inhibitors against the related human protease complex and identified potent small molecules against human ClpXP. The hit compounds showed anti-cancer activity in a panoply of leukemia, liver and breast cancer cell lines. We found that the bacterial ClpXP inhibitor 334 impairs the electron transport chain (ETC), enhances the production of mitochondrial reactive oxygen species (mtROS) and thereby promotes protein carbonylation, aberrant proteostasis and apoptosis. In addition, 334 induces cell death in re-isolated patient-derived xenograft (PDX) leukemia cells, potentiates the effect of DNA-damaging cytostatics and re-sensitizes resistant cancers to chemotherapy in non-apoptotic doses

    Survey of Disjoint NP-Pairs and Relations to Propositional Proof Systems

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    A disjoint NP-pair is a pair (A,B) of nonempty, disjoint sets A and B such that both A and B belong to the complexity class NP.3 We let DisjNP denote the collection of all disjoint NP-pairs. A separator of a disjoint NP-pair (A,B) is a set S such that A ⊆ S and B ⊆ S (Figure 1). A fundamental questio

    Metabolic implication of tigecycline as an efficacious second-line treatment for sorafenib-resistant hepatocellular carcinoma.

    Get PDF
    Sorafenib represents the current standard of care for patients with advanced-stage hepatocellular carcinoma (HCC). However, acquired drug resistance occurs frequently during therapy and is accompanied by rapid tumor regrowth after sorafenib therapy termination. To identify the mechanism of this therapy-limiting growth resumption, we established robust sorafenib resistance HCC cell models that exhibited mitochondrial dysfunction and chemotherapeutic crossresistance. We found a rapid relapse of tumor cell proliferation after sorafenib withdrawal, which was caused by renewal of mitochondrial structures alongside a metabolic switch toward high electron transport system (ETS) activity. The translation-inhibiting antibiotic tigecycline impaired the biogenesis of mitochondrial DNA-encoded ETS subunits and limited the electron acceptor turnover required for glutamine oxidation. Thereby, tigecycline prevented the tumor relapse in vitro and in murine xenografts in vivo. These results offer a promising second-line therapeutic approach for advanced-stage HCC patients with progressive disease undergoing sorafenib therapy or treatment interruption due to severe adverse events
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