412 research outputs found
Group Analysis of Self-organizing Maps based on Functional MRI using Restricted Frechet Means
Studies of functional MRI data are increasingly concerned with the estimation
of differences in spatio-temporal networks across groups of subjects or
experimental conditions. Unsupervised clustering and independent component
analysis (ICA) have been used to identify such spatio-temporal networks. While
these approaches have been useful for estimating these networks at the
subject-level, comparisons over groups or experimental conditions require
further methodological development. In this paper, we tackle this problem by
showing how self-organizing maps (SOMs) can be compared within a Frechean
inferential framework. Here, we summarize the mean SOM in each group as a
Frechet mean with respect to a metric on the space of SOMs. We consider the use
of different metrics, and introduce two extensions of the classical sum of
minimum distance (SMD) between two SOMs, which take into account the
spatio-temporal pattern of the fMRI data. The validity of these methods is
illustrated on synthetic data. Through these simulations, we show that the
three metrics of interest behave as expected, in the sense that the ones
capturing temporal, spatial and spatio-temporal aspects of the SOMs are more
likely to reach significance under simulated scenarios characterized by
temporal, spatial and spatio-temporal differences, respectively. In addition, a
re-analysis of a classical experiment on visually-triggered emotions
demonstrates the usefulness of this methodology. In this study, the
multivariate functional patterns typical of the subjects exposed to pleasant
and unpleasant stimuli are found to be more similar than the ones of the
subjects exposed to emotionally neutral stimuli. Taken together, these results
indicate that our proposed methods can cast new light on existing data by
adopting a global analytical perspective on functional MRI paradigms.Comment: 23 pages, 5 figures, 4 tables. Submitted to Neuroimag
Segmentation 3D d'hologrammes numériques de particules par palpage morphologique : application à l'analyse d'un jet diesel haute-pression
Dans cette article, nous nous intéressons à l'holographie numérique pour l'étude d'un champ volumique de particules. L'holographie numérique offre de nouvelles possibilités par rapport à l'holographie sur plaque photosensible, notamment du point de vue de sa facilité de mise en oeuvre. L'hologramme d'un champ de particules enregistré sur un capteur matriciel, est restitué numériquement plan par plan afin de pouvoir localiser les particules dans le volume d'étude. Nous introduisons pour cela une méthode de détection des particules par palpage morphologique. Nous avons appliqué cette technique à l'obtention d'un champ tridimensionnel de particules en volume, et nous présentons les résultats pour un jet issu d'un injecteur diesel haute-pression
Optical investigation of the charge-density-wave phase transitions in
We have measured the optical reflectivity of the quasi
one-dimensional conductor from the far infrared up to the
ultraviolet between 10 and 300 using light polarized along and normal to
the chain axis. We find a depletion of the optical conductivity with decreasing
temperature for both polarizations in the mid to far-infrared region. This
leads to a redistribution of spectral weight from low to high energies due to
partial gapping of the Fermi surface below the charge-density-wave transitions
at 145 K and 59 K. We deduce the bulk magnitudes of the CDW gaps and discuss
the scattering of ungapped free charge carriers and the role of fluctuations
effects
Temporally ordered collective creep and dynamic transition in the charge-density-wave conductor NbSe3
We have observed an unusual form of creep at low temperatures in the
charge-density-wave (CDW) conductor NbSe. This creep develops when CDW
motion becomes limited by thermally-activated phase advance past individual
impurities, demonstrating the importance of local pinning and related
short-length-scale dynamics. Unlike in vortex lattices, elastic collective
dynamics on longer length scales results in temporally ordered motion and a
finite threshold field. A first-order dynamic phase transition from creep to
high-velocity sliding produces "switching" in the velocity-field
characteristic.Comment: 4 pages, 4 eps figures; minor clarifications To be published in Phys.
Rev. Let
On the origin of the A and B electronic Raman scattering peaks in the superconducting state of YBaCuO
The electronic Raman scattering has been investigated in optimally oxygen
doped YBaCuO single crystals as well as in crystals
with non-magnetic, Zn, and magnetic, Ni, impurities. We found that the
intensity of the A peak is impurity independent and their energy to
ratio is almost constant (). Moreover, the
signal at the B channel is completely smeared out when non-magnetic Zn
impurities are present. These results are qualitatively interpreted in terms of
the Zeyher and Greco's theory that relates the electronic Raman scattering in
the A and B channels to \textit{d}-CDW and superconducting order
parameters fluctuations, respectively.Comment: Submited to Phys. Rev. Let
HERALD (Health Economics using Routine Anonymised Linked Data)
<b>Background</b>
Health economic analysis traditionally relies on patient derived questionnaire data, routine datasets, and outcomes data from experimental randomised control trials and other clinical studies, which are generally used as stand-alone datasets. Herein, we outline the potential implications of linking these datasets to give one single joined up data-resource for health economic analysis.<p></p>
<b>Method</b>
The linkage of individual level data from questionnaires with routinely-captured health care data allows the entire patient journey to be mapped both retrospectively and prospectively. We illustrate this with examples from an Ankylosing Spondylitis (AS) cohort by linking patient reported study dataset with the routinely collected general practitioner (GP) data, inpatient (IP) and outpatient (OP) datasets, and Accident and Emergency department data in Wales. The linked data system allows: (1) retrospective and prospective tracking of patient pathways through multiple healthcare facilities; (2) validation and clarification of patient-reported recall data, complementing the questionnaire/routine data information; (3) obtaining objective measure of the costs of chronic conditions for a longer time horizon, and during the pre-diagnosis period; (4) assessment of health service usage, referral histories, prescribed drugs and co-morbidities; and (5) profiling and stratification of patients relating to disease manifestation, lifestyles, co-morbidities, and associated costs.<p></p>
<b>Results</b>
Using the GP data system we tracked about 183 AS patients retrospectively and prospectively from the date of questionnaire completion to gather the following information: (a) number of GP events; (b) presence of a GP 'drug' read codes; and (c) the presence of a GP 'diagnostic' read codes. We tracked 236 and 296 AS patients through the OP and IP data systems respectively to count the number of OP visits; and IP admissions and duration. The results are presented under several patient stratification schemes based on disease severity, functions, age, sex, and the onset of disease symptoms.<p></p>
<b>Conclusion</b>
The linked data system offers unique opportunities for enhanced longitudinal health economic analysis not possible through the use of traditional isolated datasets. Additionally, this data linkage provides important information to improve diagnostic and referral pathways, and thus helps maximise clinical efficiency and efficiency in the use of resources
The heparan sulfate sulfotransferase 3-OST3A (HS3ST3A) is a novel tumor regulator and a prognostic marker in breast cancer
International audienceHeparan sulfate (HS) proteoglycan chains are key components of the breast tumor microenvironment that critically influence the behavior of cancer cells. It is established that abnormal synthesis and processing of HS play a prominent role in tumorigenesis, albeit mechanisms remain mostly obscure. HS function is mainly controlled by sulfotransferases, and here we report a novel cellular and pathophysiological significance for the 3-O-sulfotransferase 3-OST3A (HS3ST3A), catalyzing the final maturation step of HS, in breast cancer. We show that 3-OST3A is epigenetically repressed in all breast cancer cell lines of a panel representative of distinct molecular subgroups, except in human epidermal growth factor receptor 2-positive (HER2+) sloan-kettering breast cancer (SKBR3) cells. Epigenetic mechanisms involved both DNA methylation and histone modifications, producing different repressive chromatin environments depending on the cell molecular signature. Gain and loss of function experiments by cDNA and siRNA transfection revealed profound effects of 3-OST3A expression on cell behavior including apoptosis, proliferation, response to trastuzumab in vitro and tumor growth in xenografted mice. 3-OST3A exerted dual activities acting as tumor-suppressor in lumA-michigan cancer foundation (MCF)-7 and triple negative-MD Anderson (MDA) metastatic breast (MB)-231 cells, or as an oncogenic factor in HER2+-SKBR3 cells. Mechanistically, fluorescence-resonance energy transfer-fluorescence-lifetime imaging microscopy experiments indicated that the effects of 3-OST3A in MCF-7 cells were mediated by altered interactions between HS and fibroblast growth factor-7 (FGF-7). Further, this interplay between HS and FGF-7 modulated downstream ERK, AKT and p38 cascades, suggesting that altering 3-O-sulfation affects FGFR2IIIb-mediated signaling. Corroborating our cellular data, a clinical study conducted in a cohort of breast cancer patients uncovered that, in HER2+ patients, high level expression of 3-OST3A in tumors was associated with reduced relapse-free survival. Our findings define 3-OST3A as a novel regulator of breast cancer pathogenicity, displaying tumor-suppressive or oncogenic activities in a cell-and tumor-dependent context, and demonstrate the clinical value of the HS-O-sulfotransferase 3-OST3A as a prognostic marker in HER2+ patients
High Level of Soluble HLA-G in the Female Genital Tract of Beninese Commercial Sex Workers Is Associated with HIV-1 Infection
Most HIV infections are transmitted across mucosal epithelium. Understanding the role of innate and specific mucosal immunity in susceptibility or protection against HIV infection, as well as the effect of HIV infection on mucosal immunity, are of fundamental importance. HLA-G is a powerful modulator of the immune response. The aim of this study was to investigate whether soluble HLA-G (sHLA-G) expression in the female genital tract is associated with HIV-1 infection.Genital levels of sHLA-G were determined in 52 HIV-1-uninfected and 44 antiretroviral naïve HIV-1-infected female commercial sex workers (CSWs), as well as 71 HIV-1-uninfected non-CSW women at low risk of exposure, recruited in Cotonou, Benin. HIV-1-infected CSWs had higher genital levels of sHLA-G compared with those in both the HIV-1-uninfected CSW (P = 0.009) and non-CSW groups (P = 0.0006). The presence of bacterial vaginosis (P = 0.008), and HLA-G*01:01:02 genotype (P = 0.002) were associated with higher genital levels of sHLA-G in the HIV-1-infected CSWs, whereas the HLA-G*01:04:04 genotype was also associated with higher genital level of sHLA-G in the overall population (P = 0.038). When adjustment was made for all significant variables, the increased expression of sHLA-G in the genital mucosa remained significantly associated with both HIV-1 infection (P = 0.02) and bacterial vaginosis (P = 0.03).This study demonstrates that high level of sHLA-G in the genital mucosa is independently associated with both HIV-1 infection and bacterial vaginosis
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