Quasi-extinction risk and population targets for the Eastern, migratory population of monarch butterflies (Danaus plexippus)

The Eastern, migratory population of monarch butterflies (Danaus plexippus), an iconic North American insect, has declined by ~80% over the last decade. The monarch’s multi-generational migration between overwintering grounds in central Mexico and the summer breeding grounds in the northern U.S. and southern Canada is celebrated in all three countries and creates shared management responsibilities across North America. Here we present a novel Bayesian multivariate auto-regressive state-space model to assess quasi-extinction risk and aid in the establishment of a target population size for monarch conservation planning. We find that, given a range of plausible quasi-extinction thresholds, the population has a substantial probability of quasi-extinction, from 11–57% over 20 years, although uncertainty in these estimates is large. Exceptionally high population stochasticity, declining numbers, and a small current population size act in concert to drive this risk. An approximately 5-fold increase of the monarch population size (relative to the winter of 2014–15) is necessary to halve the current risk of quasi-extinction across all thresholds considered. Conserving the monarch migration thus requires active management to reverse population declines, and the establishment of an ambitious target population size goal to buffer against future environmentally driven variability

A General Modeling Framework for Describing Spatially Structured Population Dynamics

Variation in movement across time and space fundamentally shapes the abundance and distribution of populations. Although a variety of approaches model structured population dynamics, they are limited to specific types of spatially structured populations and lack a unifying framework. Here, we propose a unified network‐based framework sufficiently novel in its flexibility to capture a wide variety of spatiotemporal processes including metapopulations and a range of migratory patterns. It can accommodate different kinds of age structures, forms of population growth, dispersal, nomadism and migration, and alternative life‐history strategies. Our objective was to link three general elements common to all spatially structured populations (space, time and movement) under a single mathematical framework. To do this, we adopt a network modeling approach. The spatial structure of a population is represented by a weighted and directed network. Each node and each edge has a set of attributes which vary through time. The dynamics of our network‐based population is modeled with discrete time steps. Using both theoretical and real‐world examples, we show how common elements recur across species with disparate movement strategies and how they can be combined under a unified mathematical framework. We illustrate how metapopulations, various migratory patterns, and nomadism can be represented with this modeling approach. We also apply our network‐based framework to four organisms spanning a wide range of life histories, movement patterns, and carrying capacities. General computer code to implement our framework is provided, which can be applied to almost any spatially structured population. This framework contributes to our theoretical understanding of population dynamics and has practical management applications, including understanding the impact of perturbations on population size, distribution, and movement patterns. By working within a common framework, there is less chance that comparative analyses are colored by model details rather than general principles

The effects of habitat fragmentation on the genetic structure of small mammal populations

We present five case studies highlighting the effects of habitat fragmentation on the genetic structure of small mammal populations. The studies reflect different spatial scales and components of genetic variation. In marginal and central populations of Sigmodon hispidus we found less allozymic variation within the marginal population, whereas patterns of morphological variability were the converse. In the rice rat (Oryzomys spp.), nucleotide diversity in mtDNA was similar in an island population in the Florida Keys to mainland populations in the Everglades. This observation contrasts with insular vole populations (Microtus spp.), where isolation on islands results in genetic structuring. Temporal changes in abundance in mainland populations had no effects on genetic differentiation (FST values) because subpopulations did not experience bottlenecks. In an experimentally fragmented landscape, fragmentation influenced demographic processes but not genetic structure. We conclude that (1) with extreme fragmentation, small mammal populations become depauperate of genetic variation and differentiate genetically; (2) different components of genetic variation lead to different genetic structuring; (3) spatial and temporal scales should both be considered when examining genetic structure of populations; (4) demographic and ecological processes are more likely influenced by fragmentation than genetic structure; and (5) there is an interaction between demographic processes and genetic structure

Review of indicators for comparing environmental effects across energy sources

Robust, quantitative comparisons of environmental effects across energy sources can support development of energy planning strategies that meet growing demand while managing and minimizing undesirable effects on environmental resources. Multicriteria analyses of energy systems often use a suite of indicators to make such comparisons, but those indicators and their units of measure vary among studies. We reviewed 179 papers that described or applied energy indicators to compare environmental effects of different primary energy sources to answer four questions: (1) what environmental indicators have been used in multicriteria energy-source comparisons? (2) across studies, how consistently are these indicators used to quantify effects? (3) to what degree are different effects accounted for across energy sources and locations? and (4) how comprehensive are indicators in terms of assessing known environmental effects? For reviewed studies, we quantified the number of unique indicators and the diversity of indicators used to measure different effects. We also recorded the specific measurement units applied to quantify each indicator, the energy sources evaluated, and the continent where each study was conducted. While we found that many environmental effects of energy development have been analyzed across multiple sources, indicators were frequently measured, interpreted, and applied in ways that are not directly comparable, and some known environmental effects were infrequently assessed. We also found an emphasis on applying indicators to renewable energy sources; assessing current and potential energy sources, both renewable and nonrenewable, would greatly clarify the full suite of tradeoffs among sources and can inform energy development strategies that minimize adverse environmental effects. Overall, our review indicated that making comprehensive comparisons of the effects of energy development across sources may require efforts to standardize how effects are measured, synthesize effects literature into an open-source database, expand the range of environmental effects analyzed, and establish consistent frameworks for comparison

Effects of urbanization and habitat composition on site occupancy of two snake species using regional monitoring data from southern California

Detection data from a regional, reptile-monitoring program conducted by the U.S. Geological Survey were analyzed to understand the effects of urbanization and habitat composition on site occupancy of the coachwhip (Masticophis flagellum) and striped racer (M. lateralis) in coastal southern California. Likelihood-based occupancy models indicated striped racers responded to habitat composition, favoring scrub-dominated sites. Coachwhips also responded to habitat composition, favoring open habitats. However, unlike racers, coachwhip spatial population dynamics were strongly associated with the fragmentation and isolation of natural areas caused by urbanization. The odds of coachwhips occupying a site were 64 times greater in large connected areas than the most urbanized and fragmented sites. For coachwhips within urbanized and fragmented sites, the odds of extinction were 10 times greater and odds of colonization were five times lower than in large connected sites. Observed differences between the species in habitat use and specificity are supported by telemetry studies and corroborate existing knowledge of historical patterns of occurrence within the region. Movement data on the coachwhip and striped racer indicate the coachwhip is a wider-ranging species with a greater propensity to encounter roads and other edge environments. Collectively, the results suggest there is widespread loss of the coachwhip from the region, and that long-term persistence of remaining populations is dependent on metapopulation dynamics. The substantially different response of the two species to land-use change serves as a caution against the casual use of closely related species as surrogates in the development of species-specific conservation plans. Keywords: Connectivity, Extinction, Habitat fragmentation, Isolation, Masticophis flagellum, Masticophis fuliginosus, Masticophis lateralis, Occupanc