Plant dispersal characteristics shape the relationship of diversity with area and isolation

Aim This study disentangles how plant dispersal syndromes influence the relationship of species richness with area and isolation while also accounting for the human impact on island biodiversity. It builds on the potential of islands at the mesoscale and of similar origin to contribute to the ongoing discussion in island biogeography on what determines species richness and filtering. Location Denmark, 54 saltwater and brackish water islands in the North and Baltic Sea Taxon Vascular plants, including pteridophytes (ferns, clubmosses and horsetails) Methods Generalized linear models (GLMs) and linear regressions are used to analyse how dispersal syndromes influence the relationships of species numbers with island area and isolation, as well as island inhabitation and human density, respectively. Results Species numbers, as well as mean seed mass and the proportion of zoochore and anemochore species, are positively related to island area while the share of water-dispersed species decreases with increasing area. The slope of the regression line representing the species-area relationship (SAR) was 0.34 and lies within the common range for this relationship. Isolation is weakly related to mean seed mass but has no explaining power for species numbers and the presence of specific dispersal syndrome on the target islands. Species richness and seed mass was positively related to human presence. Main conclusions Human impact for centuries has not overwritten the strong relationship of species richness with area on the Danish Islands but is affecting the shape of this relationship. Island area constitutes a strong filter for different dispersal syndromes and leads to the assumption that heavier and animal-dispersed seeds are positively related to island area due to the presence of more bird and mammal species. Human-induced loss of isolation caused by ongoing traffic and the connection of landmasses by bridges and ferries may be a reason for the overall low explanatory power of island isolation. Higher species richness on inhabited islands may further be linked to higher habitat diversity in human modified landscapes.The data file (.xlsx file) can be opened in Excel or Libre Office. It might be easiest to access the data file in R as it can then be used in combination with the provided R code.The dataset consists of three parts: (I) Environmental data listing the 54 studied Danish Islands including island characteristics, (II) plant species occurrence data (presence/absence data) on these islands, and (III) trait data of vascular plants that form part of the study. Environmental data For all target islands, information on isolation to continental land masses, island area, and the number of island inhabitants were gathered. The exact geographic position and precise boundaries of the 54 target islands were determined in GIS. This allowed us to calculate isolation as the shortest distance to the nearest mainland (species pool; considering the largest islands Saelland, Vendsyssel-Thyto, and Fyn to be part of continental Denmark), and surface area of the individual islands. To account for human alterations we identified inhabited and uninhabited islands and calculated human density (number of island inhabitants per ha). The number of island inhabitants was compiled from Danmarks Statistik (2021) and for smaller islands, we used Google Earth images (© Google Earth 2021) to verify that no houses were present on the island (human density = 0). Danmarks Statistik (2021). www.statbank.dk/BEF4 (last accessed on 25.10.2021). Species occurrence data Species occurrence data was extracted from a comprehensive data set compiled by Erik Wessberg and co-workers since 1979. It became available in 2011 on the homepage of the Danish Botanical Society as a series of commented species lists, one for each of the islands or cluster of islands surveyed in total (Wessberg et al. 2011). Wessberg, E. et al. (2011). Homepage of the Danish Botanical Society, accessed 10 June 2012, https://botaniskforening.dk/botanik/ofloraer/. Trait data Trait information on seed mass (mg) and dispersal syndromes (zoochory, hydrochory, anemochory, and autochory) were gathered for the 1201 species found on 54 Danish islands from a set of databases: mainly Royal Botanic Gardens Kew (2016), LEDA database (Kleyer et al., 2008) and additionally Ecological Flora of The British Isles (Fitter & Peat, 1994), BiolFlor (Klotz, et al., 2002), BROT trait database for plant species of the Mediterranean Basin (Paula et al., 2009), and D³, The Dispersal and Diaspore Database (Hintze, et al. 2013). Gaps in the data (roughly 100 species) were filled, when possible, by interpolation based on the traits of other species of the same genus, and ferns and clubmosses were assigned the smallest seed mass value in the dataset. Fitter, A. H. & Peat, H. J. 1994. The Ecological Flora Database. Journal of Ecology 82, 415-425. Hintze, C., Heydel F, Hoppe C, Cunze S, König A & Tackenberg O. (2013). D³: The Dispersal and Diaspore Database - Baseline data and statistics on seed dispersal. – Perspectives in Plant Ecology and Evolutionary Syst., 15, 180-192. Kleyer, M., Bekker, R., Knevel, I., Bakker, J., Thompson, K., Sonnenschein, M., … Peco, B. (2008). The LEDA Traitbase: A database of life-history traits of Northwest European flora. Journal of Ecology, 96, 1266-1274 Klotz, S., Kühne, I., & Walter, D. S. (2002). BIOLFLOR - Eine Datenbank zu biologisch-ökologischen Merkmalen der Gefäßpflanzen in Deutschland. – Schriftenreihe für Vegetationskunde 38. Bonn: Bundesamt für Naturschutz. Paula, S., Arianoutsou, M., Kazanis, D., Tavsanoglu, Ç., Lloret, F., Buhk, C., Ojeda, F., Luna, B., Moreno, J. M., Rodrigo, A., Espelta, J. M., Palacio, S., Fernández-Santos, B., Fernandes, P. M., & Pausas, J.G. (2009). Fire-related traits for plant species of the Mediterranean Basin. Ecology, 90, 1420 Royal Botanic Gardens Kew. (2016). Seed Information Database (SID). Version 7.1. Available from: http://data.kew.org/sid/ (June 2016)

Contributions to uncertainty related to hydrostratigraphic modeling using multiple-point statistics

Forecasting the flow of groundwater requires a hydrostratigraphic model, which describes the architecture of the subsurface. State-of-the-art multiple-point statistical (MPS) tools are readily available for creating models depicting subsurface geology. We present a study of the impact of key parameters related to stochastic MPS simulation of a real-world hydrogeophysical dataset from Kasted, Denmark, using the snesim algorithm. The goal is to study how changes to the underlying datasets propagate into the hydrostratigraphic realizations when using MPS for stochastic modeling. This study focuses on the sensitivity of the MPS realizations to the geophysical soft data, borehole lithology logs, and the training image (TI). The modeling approach used in this paper utilizes a cognitive geological model as a TI to simulate ensemble hydrostratigraphic models. The target model contains three overall hydrostratigraphic categories, and the MPS realizations are compared visually as well as quantitatively using mathematical measures of similarity. The quantitative similarity analysis is carried out exhaustively, and realizations are compared with each other as well as with the cognitive geological model.The results underline the importance of geophysical data for constraining MPS simulations. Relying only on borehole data and the conceptual geology, or TI, results in a significant increase in realization uncertainty. The airborne transient electromagnetic SkyTEM data used in this study cover a large portion of the Kasted model area and are essential to the hydrostratigraphic architecture. On the other hand, the borehole lithology logs are sparser, and 410 boreholes were present in this study. The borehole lithology logs infer local changes in the immediate vicinity of the boreholes, thus, in areas with a high degree of geological heterogeneity, boreholes only provide limited large-scale structural information. Lithological information is, however, important for the interpretation of the geophysical responses. The importance of the TI was also studied. An example was presented where an alternative geological model from a neighboring area was used to simulate hydrostratigraphic models. It was shown that as long as the geological settings are similar in nature, the realizations, although different, still reflect the hydrostratigraphic architecture. If a TI containing a biased geological conceptualization is used, the resulting realizations will resemble the TI and contain less structure in particular areas, where the soft data show almost even probability to two or all three of the hydrostratigraphic units.</p

Duration of hydrothermal alteration and mineralization of the Don Manuel porphyry copper system, central Chile

The Don Manuel porphyry copper system, located in the Miocene–Pliocene metallogenic belt of central Chile, contains spatially zoned alteration styles common to other porphyry copper deposits including extensive potassic alteration, propylitic alteration, localized sericite-chlorite alteration and argillic alteration but lacks pervasive hydrolytic alteration typical of some deposits. It is one of the youngest porphyry copper deposits in the Andes. Timing of mineralization and the hydrothermal system at Don Manuel are consistent with emplacement of the associated intrusions (ca. 4 and 3.6 Ma). Two molybdenite samples yielded consistent ages of 3.412 ± 0.037 and 3.425 ± 0.037 Ma. 40Ar/39Ar ages on hydrothermal biotites (3.57 ± 0.02, 3.51 ± 0.02, 3.41 ± 0.01, and 3.37 ± 0.01 Ma) are associated with potassic alteration. These ages are younger than the youngest intrusion by ~300 k.y. recording the cooling of the system below 350 °C. Such a time gap can be explained by fluxing of hot magmatic fluids from deeper magmatic sources

Reduced level of arousal and increased mortality in adult acute medical admissions: a systematic review and meta-analysis

Abstract Background Reduced level of arousal is commonly observed in medical admissions and may predict in-hospital mortality. Delirium and reduced level of arousal are closely related. We systematically reviewed and conducted a meta-analysis of studies in adult acute medical patients of the relationship between reduced level of arousal on admission and in-hospital mortality. Methods We conducted a systematic review (PROSPERO: CRD42016022048), searching MEDLINE and EMBASE. We included studies of adult patients admitted with acute medical illness with level of arousal assessed on admission and mortality rates reported. We performed meta-analysis using a random effects model. Results From 23,941 studies we included 21 with 14 included in the meta-analysis. Mean age range was 33.4 - 83.8 years. Studies considered unselected general medical admissions (8 studies, n=13,039) or specific medical conditions (13 studies, n=38,882). Methods of evaluating level of arousal varied. The prevalence of reduced level of arousal was 3.1%-76.9% (median 13.5%). Mortality rates were 1.7%-58% (median 15.9%). Reduced level of arousal was associated with higher in-hospital mortality (pooled OR 5.71; 95% CI 4.21-7.74; low quality evidence: high risk of bias, clinical heterogeneity and possible publication bias). Conclusions Reduced level of arousal on hospital admission may be a strong predictor of in-hospital mortality. Most evidence was of low quality. Reduced level of arousal is highly specific to delirium, better formal detection of hypoactive delirium and implementation of care pathways may improve outcomes. Future studies to assess the impact of interventions on in-hospital mortality should use validated assessments of both level of arousal and delirium

Pulmonary toxicity of synthetic amorphous silica–effects of porosity and copper oxide doping

Materials can be modified for improved functionality. Our aim was to test whether pulmonary toxicity of silica nanomaterials is increased by the introduction of: a) porosity; and b) surface doping with CuO; and whether c) these modifications act synergistically. Mice were exposed by intratracheal instillation and for some doses also oropharyngeal aspiration to: 1) solid silica 100 nm; 2) porous silica 100 nm; 3) porous silica 100 nm with CuO doping; 4) solid silica 300 nm; 5) porous silica 300 nm; 6) solid silica 300 nm with CuO doping; 7) porous silica 300 nm with CuO doping; 8) CuO nanoparticles 9.8 nm; or 9) carbon black Printex 90 as benchmark. Based on a pilot study, dose levels were between 0.5 and 162 µg/mouse (0.2 and 8.1 mg/kg bw). Endpoints included pulmonary inflammation (neutrophil numbers in bronchoalveolar fluid), acute phase response, histopathology, and genotoxicity assessed by the comet assay, micronucleus test, and the gamma-H2AX assay. The porous silica materials induced greater pulmonary inflammation than their solid counterparts. A similar pattern was seen for acute phase response induction and histologic changes. This could be explained by a higher specific surface area per mass unit for the most toxic particles. CuO doping further increased the acute phase response normalized according to the deposited surface area. We identified no consistent evidence of synergism between surface area and CuO doping. In conclusion, porosity and CuO doping each increased the toxicity of silica nanomaterials and there was no indication of synergy when the modifications co-occurred

Inhibition of Plasmepsin V activity demonstrates its essential role in protein export, PfEMP1 display, and survival of malaria parasites

The malaria parasite Plasmodium falciparum exports several hundred proteins into the infected erythrocyte that are involved in cellular remodeling and severe virulence. The export mechanism involves the Plasmodium export element (PEXEL), which is a cleavage site for the parasite protease, Plasmepsin V (PMV). The PMV gene is refractory to deletion, suggesting it is essential, but definitive proof is lacking. Here, we generated a PEXEL-mimetic inhibitor that potently blocks the activity of PMV isolated from P. falciparum and Plasmodium vivax. Assessment of PMV activity in P. falciparum revealed PEXEL cleavage occurs cotranslationaly, similar to signal peptidase. Treatment of P. falciparum-infected erythrocytes with the inhibitor caused dose-dependent inhibition of PEXEL processing as well as protein export, including impaired display of the major virulence adhesin, PfEMP1, on the erythrocyte surface, and cytoadherence. The inhibitor killed parasites at the trophozoite stage and knockdown of PMV enhanced sensitivity to the inhibitor, while overexpression of PMV increased resistance. This provides the first direct evidence that PMV activity is essential for protein export in Plasmodium spp. and for parasite survival in human erythrocytes and validates PMV as an antimalarial drug target

Functional comparison of blood-stage Plasmodium falciparum malaria vaccine candidate antigens

The malaria genome encodes over 5,000 proteins and many of these have also been proposed to be potential vaccine candidates, although few of these have been tested clinically. RH5 is one of the leading blood-stage Plasmodium falciparum malaria vaccine antigens and Phase I/II clinical trials of vaccines containing this antigen are currently underway. Its likely mechanism of action is to elicit antibodies that can neutralize merozoites by blocking their invasion of red blood cells (RBC). However, many other antigens could also elicit neutralizing antibodies against the merozoite, and most of these have never been compared directly to RH5. The objective of this study was to compare a range of blood-stage antigens to RH5, to identify any antigens that outperform or synergize with anti-RH5 antibodies. We selected 55 gene products, covering 15 candidate antigens that have been described in the literature and 40 genes selected on the basis of bioinformatics functional prediction. We were able to make 20 protein-in-adjuvant vaccines from the original selection. Of these, S-antigen and CyRPA robustly elicited antibodies with neutralizing properties. Anti-CyRPA IgG generally showed additive GIA with anti-RH5 IgG, although high levels of anti-CyRPA-specific rabbit polyclonal IgG were required to achieve 50% GIA. Our data suggest that further vaccine antigen screening efforts are required to identify a second merozoite target with similar antibody-susceptibility to RH5

Stable Isotopic Evidence for Methane Seeps in Neoproterozoic Postglacial Cap Carbonates

The Earth's most severe glaciations are thought to have occurred about 600 million years ago, in the late Neoproterozoic era. A puzzling feature of glacial deposits from this interval is that they are overlain by 1–5-m-thick 'cap carbonates' (particulate deep-water marine carbonate rocks) associated with a prominent negative carbon isotope excursion. Cap carbonates have been controversially ascribed to the aftermath of almost complete shutdown of the ocean ecosystems for millions of years during such ice ages—the 'snowball Earth' hypothesis. Conversely, it has also been suggested that these carbonate rocks were the result of destabilization of methane hydrates during deglaciation and concomitant flooding of continental shelves and interior basins. The most compelling criticism of the latter 'methane hydrate' hypothesis has been the apparent lack of extreme isotopic variation in cap carbonates inferred locally to be associated with methane seeps. Here we report carbon isotopic and petrographic data from a Neoproterozoic postglacial cap carbonate in south China that provide direct evidence for methane-influenced processes during deglaciation. This evidence lends strong support to the hypothesis that methane hydrate destabilization contributed to the enigmatic cap carbonate deposition and strongly negative carbon isotopic anomalies following Neoproterozoic ice ages. This explanation requires less extreme environmental disturbance than that implied by the snowball Earth hypothesis