Scanner Invariant Representations for Diffusion MRI Harmonization

Purpose: In the present work we describe the correction of diffusion-weighted MRI for site and scanner biases using a novel method based on invariant representation. Theory and Methods: Pooled imaging data from multiple sources are subject to variation between the sources. Correcting for these biases has become very important as imaging studies increase in size and multi-site cases become more common. We propose learning an intermediate representation invariant to site/protocol variables, a technique adapted from information theory-based algorithmic fairness; by leveraging the data processing inequality, such a representation can then be used to create an image reconstruction that is uninformative of its original source, yet still faithful to underlying structures. To implement this, we use a deep learning method based on variational auto-encoders (VAE) to construct scanner invariant encodings of the imaging data. Results: To evaluate our method, we use training data from the 2018 MICCAI Computational Diffusion MRI (CDMRI) Challenge Harmonization dataset. Our proposed method shows improvements on independent test data relative to a recently published baseline method on each subtask, mapping data from three different scanning contexts to and from one separate target scanning context. Conclusion: As imaging studies continue to grow, the use of pooled multi-site imaging will similarly increase. Invariant representation presents a strong candidate for the harmonization of these data

Ultrafast dynamics in the presence of antiferromagnetic correlations in electron-doped cuprate La2−x_{2-x}Cex_xCuO4±δ_{4\pm\delta}

We used femtosecond optical pump-probe spectroscopy to study the photoinduced change in reflectivity of thin films of the electron-doped cuprate La$_{2-x}$Ce$_x$CuO$_4$ (LCCO) with dopings of x$=$0.08 (underdoped) and x$=$0.11 (optimally doped). Above T$_c$, we observe fluence-dependent relaxation rates which onset at a similar temperature that transport measurements first see signatures of antiferromagnetic correlations. Upon suppressing superconductivity with a magnetic field, it is found that the fluence and temperature dependence of relaxation rates is consistent with bimolecular recombination of electrons and holes across a gap (2$\Delta_{AF}$) originating from antiferromagnetic correlations which comprise the pseudogap in electron-doped cuprates. This can be used to learn about coupling between electrons and high-energy ($\omega>2\Delta_{AF}$) excitations in these compounds and set limits on the timescales on which antiferromagnetic correlations are static

Experimental phase diagram of moving vortices

In the mixed state of type II superconductors, vortices penetrate the sample and form a correlated system due to the screening of supercurrents around them. Interestingly, we can study this correlated system as a function of density and driving force. The density, for instance, is controlled by the magnetic field, B, whereas a current density j acts as a driving force F=jxB on all vortices. The free motion of vortices is inhibited by the presence of an underlying potential, which tends to pin the vortices. Hence, to minimize the pinning strength we studied a superconducting glass in which the depinning current is 10 to 1000 times smaller than in previous studies, which enables us to map out the complete phase diagram in this new regime. The diagram is obtained as a function of B, driving current and temperature and led a remarkable set of new results, which includes a huge peak effect, an additional reentrant depinning phase and a driving force induced pinning phase.Comment: 4 page

The distribution of extremal points of Gaussian scalar fields

We consider the signed density of the extremal points of (two-dimensional) scalar fields with a Gaussian distribution. We assign a positive unit charge to the maxima and minima of the function and a negative one to its saddles. At first, we compute the average density for a field in half-space with Dirichlet boundary conditions. Then we calculate the charge-charge correlation function (without boundary). We apply the general results to random waves and random surfaces. Furthermore, we find a generating functional for the two-point function. Its Legendre transform is the integral over the scalar curvature of a 4-dimensional Riemannian manifold.Comment: 22 pages, 8 figures, corrected published versio

Steep sharp-crested gravity waves on deep water

A new type of steady steep two-dimensional irrotational symmetric periodic gravity waves on inviscid incompressible fluid of infinite depth is revealed. We demonstrate that these waves have sharper crests in comparison with the Stokes waves of the same wavelength and steepness. The speed of a fluid particle at the crest of new waves is greater than their phase speed.Comment: 4 pages, 2 figures, submitted to Phys. Rev. Let

Slow plasmon modes in polymeric salt solutions

The dynamics of polymeric salt solutions are presented. The salt consists of chains $\rm A$ and $\rm B$, which are chemically different and interact with a Flory-interaction parameter $\chi$, the $\rm A$ chain ends carry a positive charge whereas the $\rm B$ chain ends are modified by negative charges. The static structure factor shows a peak corresponding to a micro phase separation. At low momentum transfer, the interdiffusion mode is driven by electrostatics and is of the plasmon-type, but with an unusually low frequency, easily accessible by experiments. This is due to the polymer connectivity that introduces high friction and amplifies the charge scattering thus allowing for low charge densities. The interdiffusion mode shows a minimum (critical slowing down) at finite $k$ when the interaction parameter increases we find then a low $k$ frequency quasi-plateau.Comment: accepted in Europhys. Let

XY checkerboard antiferromagnet in external field

Ordering by thermal fluctuations is studied for the classical XY antiferromagnet on a checkerboard lattice in zero and finite magnetic fields by means of analytical and Monte Carlo methods. The model exhibits a variety of novel broken symmetries including states with nematic ordering in zero field and with triatic order parameter at high fields.Comment: 6 page

Signed zeros of Gaussian vector fields-density, correlation functions and curvature

We calculate correlation functions of the (signed) density of zeros of Gaussian distributed vector fields. We are able to express correlation functions of arbitrary order through the curvature tensor of a certain abstract Riemann-Cartan or Riemannian manifold. As an application, we discuss one- and two-point functions. The zeros of a two-dimensional Gaussian vector field model the distribution of topological defects in the high-temperature phase of two-dimensional systems with orientational degrees of freedom, such as superfluid films, thin superconductors and liquid crystals.Comment: 14 pages, 1 figure, uses iopart.cls, improved presentation, to appear in J. Phys.

Persistent holes in a fluid

We observe stable holes in a vertically oscillated 0.5 cm deep aqueous suspension of cornstarch for accelerations a above 10g. Holes appear only if a finite perturbation is applied to the layer. Holes are circular and approximately 0.5 cm wide, and can persist for more than 10^5 cycles. Above a = 17g the rim of the hole becomes unstable producing finger-like protrusions or hole division. At higher acceleration, the hole delocalizes, growing to cover the entire surface with erratic undulations. We find similar behavior in an aqueous suspension of glass microspheres.Comment: 4 pages, 6 figure