240 research outputs found
Studies relating to protein expression in the uterus of the cow
End of project reportEmbryo loss is a major cause of reproductive wastage in the cow. The majority of embryo loss occurs in the first 16 days after fertilisation when the embryo is critically dependent on the maternal uterine environment for survival. Despite the central role of uterine fluid in the normal growth and development of the embryo, there is limited information on the protein composition of these fluids. The main objectives of the studies in this thesis were to examine the protein composition of the bovine uterus during the oestrous cycle and to examine the relationship between the concentration of systemic progesterone and uterine protein expression in the cow.
In the first study, the concentration of retinol-binding protein (RBP) in the bovine uterus was found to vary across the cycle and was 5-15-fold higher (P0.05) of the cycle, which was surprising given that previous studies have indicated that uterine RBP gene expression was positively associated with the concentration of systemic progesterone.
In the second study, IGF binding protein 2 (IGFBP-2), IGFBP-3, IGFBP-4 and IGFBP-5 were identified in uterine fluid on days 3, 7, 11 and 15 of the oestrous cycle. There was a local effect on the concentration of IGFBPs where the concentration was greater on the ipsilateral side than that on the contralateral side for IGFBP-2 (P<0.05), 3 (P<0.01) and 5 (P<0.01) on day 15. This difference is a further indication of a local controlling mechanism regulating proteins between the uterine horns. Similar to RBP expression this study could find no significant relationship between the concentration of systemic progesterone and IGFBP concentrations on Day 7 of the oestrous cycle.
In the third study, changes in the global pattern of uterine proteins between Days 3 and Day 15 of the oestrous cycle were examined using two-dimensional electrophoresis (2-DE). Six proteins were found to be upregulated on Day 15 compared to Day 3. Three proteins of these were identified as aldose reductase, plakoglobin and heat shock protein 27 while the other three proteins were identified as bovine serum albumin. Aldose reductase, an enzyme directly involved in the production of sorbitol and indirectly of fructose, was 10-fold higher (P<0.0001) on Day 15 compared to Day 3. Plakoglobin (Pg) was upregulated 2.3-fold (P<0.0001) on Day 15 compared to Day 3. Pg is a component of cellular junctions and its up-regulation may have a role in the uterine glandular epithelium. Heat shock protein 27 (Hsp27) was higher on Day 15 than on Day 3 (P<0.01) and Hsp27 was 1.4-fold higher in the ipsilateral compared to the contralateral uterine horn (P<0.01). Hsp27 may be secreted in response to potential stresses in the uterus or act as a molecular chaperone. On Day 7 there was no difference (P<0.05) in the pattern of proteins secreted between cows with low (2.7±0.10ng/ml) and high (4.8±0.13 ng/ml) concentrations of systemic progesterone on Day 7.
The results of these studies have shown that dramatic changes occur in protein expression across the bovine oestrous cycle. Additionally, it emphasises the need for gene studies to be followed with protein studies as an adjunct or complementary tool. Proteins have a wide range of essential roles in the uterus and together these studies provide novel information on protein expression in the uterus of the cow
Langevin Equation for the Rayleigh model with finite-ranged interactions
Both linear and nonlinear Langevin equations are derived directly from the
Liouville equation for an exactly solvable model consisting of a Brownian
particle of mass interacting with ideal gas molecules of mass via a
quadratic repulsive potential. Explicit microscopic expressions for all kinetic
coefficients appearing in these equations are presented. It is shown that the
range of applicability of the Langevin equation, as well as statistical
properties of random force, may depend not only on the mass ratio but
also by the parameter , involving the average number of molecules in
the interaction zone around the particle. For the case of a short-ranged
potential, when , analysis of the Langevin equations yields previously
obtained results for a hard-wall potential in which only binary collisions are
considered. For the finite-ranged potential, when multiple collisions are
important (), the model describes nontrivial dynamics on time scales
that are on the order of the collision time, a regime that is usually beyond
the scope of more phenomenological models.Comment: 21 pages, 1 figure. To appear in Phys. Rev.
Control of Ovulation Rate in Beef Cattle.
End of Project ReportUnder intensive production systems, the greatest potential for effecting increases
in production and economic efficiency in the beef cow herd lies in the possibility
of increasing the frequency of twin births. Embryo transfer is technically a
successful method of inducing twin births in cattle. While an embryo transfer
approach is too costly to allow commercial twinning, it has been used to show
that ovulation rate and not uterine capacity is the limiting factor in increasing the
reproductive rate of the cow. While ovulation of one or more viable oocytes is
central to normal reproduction, knowledge of the control of ovulation and of
folliculogenesis on which ovulation depends, is limited. In spite of the fact that
many follicles are subjected to the same endogenous hormonal environment and
theoretically should all be capable of ovulating, only a tiny proportion do. While
gonadotrophic hormones play a central role in ovarian follicle development and
ovulation, their action at the ovarian level seems to be controlled by intra-ovarian
factors. This intra-ovarian control of ovulation is thought to be exerted partly by
the hormone inhibin and partly by other, as yet, unidentified compounds in
follicular fluid. This project focused on identification and isolation of ovarian
compounds involved in the control of ovulation rate, followed by immunisation
against these compounds in order to study the effect on ovulation and the twin
calving rates. The main results are summarised here and detailed results have
been published in the papers listed at the end of this report
Using a combination of quantitative culture, molecular, and infrastructure data to rank potential sources of fecal contamination in Town Creek Estuary, North Carolina
Estuarine water quality is declining worldwide due to increased tourism, coastal development, and a changing climate. Although well-established methods are in place to monitor water quality, municipalities struggle to use the data to prioritize infrastructure for monitoring and repair and to determine sources of contamination when they occur. The objective of this study was to assess water quality and prioritize sources of contamination within Town Creek Estuary (TCE), Beaufort, North Carolina, by combining culture, molecular, and geographic information systems (GIS) data into a novel contamination source ranking system. Water samples were collected from TCE at ten locations on eight sampling dates in Fall 2021 (n = 80). Microbiological water quality was assessed using US Environmental Protection Agency (U.S. EPA) approved culture-based methods for fecal indicator bacteria (FIB), including analysis of total coliforms (TC), Escherichia coli (EC), and Enterococcus spp. (ENT). The quantitative microbial source tracking (qMST) human-associated fecal marker, HF183, was quantified using droplet digital PCR (ddPCR). This information was combined with environmental data and GIS information detailing proximal sewer, septic, and stormwater infrastructure to determine potential sources of fecal contamination in the estuary. Results indicated FIB concentrations were significantly and positively correlated with precipitation and increased throughout the estuary following rainfall events (p < 0.01). Sampling sites with FIB concentrations above the U.S. EPA threshold also had the highest percentages of aged, less durable piping materials. Using a novel ranking system combining concentrations of FIB, HF183, and sewer infrastructure data at each site, we found that the two sites nearest the most aged sewage infrastructure and stormwater outflows were found to have the highest levels of measurable fecal contamination. This case study supports the inclusion of both traditional water quality measurements and local infrastructure data to support the current need for municipalities to identify, prioritize, and remediate failing infrastructure
An overview of jets and outflows in stellar mass black holes
In this book chapter, we will briefly review the current empirical
understanding of the relation between accretion state and and outflows in
accreting stellar mass black holes. The focus will be on the empirical
connections between X-ray states and relativistic (`radio') jets, although we
are now also able to draw accretion disc winds into the picture in a systematic
way. We will furthermore consider the latest attempts to measure/order jet
power, and to compare it to other (potentially) measurable quantities, most
importantly black hole spin.Comment: Accepted for publication in Space Science Reviews. Also to appear in
the Space Sciences Series of ISSI - The Physics of Accretion on to Black
Holes (Springer Publisher
Integrin activation - the importance of a positive feedback
Integrins mediate cell adhesion and are essential receptors for the
development and functioning of multicellular organisms. Integrin activation is
known to require both ligand and talin binding and to correlate with cluster
formation but the activation mechanism and precise roles of these processes are
not yet resolved. Here mathematical modeling, with known experimental
parameters, is used to show that the binding of a stabilizing factor, such as
talin, is alone insufficient to enable ligand-dependent integrin activation for
all observed conditions; an additional positive feedback is required.Comment: in press in Bulletin of Mathematical Biolog
Modelling spectral and timing properties of accreting black holes: the hybrid hot flow paradigm
The general picture that emerged by the end of 1990s from a large set of
optical and X-ray, spectral and timing data was that the X-rays are produced in
the innermost hot part of the accretion flow, while the optical/infrared (OIR)
emission is mainly produced by the irradiated outer thin accretion disc. Recent
multiwavelength observations of Galactic black hole transients show that the
situation is not so simple. Fast variability in the OIR band, OIR excesses
above the thermal emission and a complicated interplay between the X-ray and
the OIR light curves imply that the OIR emitting region is much more compact.
One of the popular hypotheses is that the jet contributes to the OIR emission
and even is responsible for the bulk of the X-rays. However, this scenario is
largely ad hoc and is in contradiction with many previously established facts.
Alternatively, the hot accretion flow, known to be consistent with the X-ray
spectral and timing data, is also a viable candidate to produce the OIR
radiation. The hot-flow scenario naturally explains the power-law like OIR
spectra, fast OIR variability and its complex relation to the X-rays if the hot
flow contains non-thermal electrons (even in energetically negligible
quantities), which are required by the presence of the MeV tail in Cyg X-1. The
presence of non-thermal electrons also lowers the equilibrium electron
temperature in the hot flow model to <100 keV, making it more consistent with
observations. Here we argue that any viable model should simultaneously explain
a large set of spectral and timing data and show that the hybrid
(thermal/non-thermal) hot flow model satisfies most of the constraints.Comment: 26 pages, 13 figures. To be published in the Space Science Reviews
and as hard cover in the Space Sciences Series of ISSI - The Physics of
Accretion on to Black Holes (Springer Publisher
Radio emission and jets from microquasars
To some extent, all Galactic binary systems hosting a compact object are
potential `microquasars', so much as all galactic nuclei may have been quasars,
once upon a time. The necessary ingredients for a compact object of stellar
mass to qualify as a microquasar seem to be: accretion, rotation and magnetic
field. The presence of a black hole may help, but is not strictly required,
since neutron star X-ray binaries and dwarf novae can be powerful jet sources
as well. The above issues are broadly discussed throughout this Chapter, with a
a rather trivial question in mind: why do we care? In other words: are jets a
negligible phenomenon in terms of accretion power, or do they contribute
significantly to dissipating gravitational potential energy? How do they
influence their surroundings? The latter point is especially relevant in a
broader context, as there is mounting evidence that outflows powered by
super-massive black holes in external galaxies may play a crucial role in
regulating the evolution of cosmic structures. Microquasars can also be thought
of as a form of quasars for the impatient: what makes them appealing, despite
their low number statistics with respect to quasars, are the fast variability
time-scales. In the first approximation, the physics of the jet-accretion
coupling in the innermost regions should be set by the mass/size of the
accretor: stellar mass objects vary on 10^5-10^8 times shorter time-scales,
making it possible to study variable accretion modes and related ejection
phenomena over average Ph.D. time-scales. [Abridged]Comment: 28 pages, 13 figures, To appear in Belloni, T. (ed.): The Jet
Paradigm - From Microquasars to Quasars, Lect. Notes Phys. 794 (2009
Jet disc coupling in black hole binaries
In the last decade multi-wavelength observations have demonstrated the
importance of jets in the energy output of accreting black hole binaries. The
observed correlations between the presence of a jet and the state of the
accretion flow provide important information on the coupling between accretion
and ejection processes. After a brief review of the properties of black hole
binaries, I illustrate the connection between accretion and ejection through
two particularly interesting examples. First, an INTEGRAL observation of Cygnus
X-1 during a 'mini-' state transition reveals disc jet coupling on time scales
of orders of hours. Second, the black hole XTEJ1118+480 shows complex
correlations between the X-ray and optical emission. Those correlations are
interpreted in terms of coupling between disc and jet on time scales of seconds
or less. Those observations are discussed in the framework of current models.Comment: Invited talk at the Fifth Stromlo Symposium: Disks, Winds & Jets -
from Planets to Quasars. Accepted for publication in Astrophysics & Space
Scienc
The balance of power: accretion and feedback in stellar mass black holes
In this review we discuss the population of stellar-mass black holes in our
galaxy and beyond, which are the extreme endpoints of massive star evolution.
In particular we focus on how we can attempt to balance the available accretion
energy with feedback to the environment via radiation, jets and winds,
considering also possible contributions to the energy balance from black hole
spin and advection. We review quantitatively the methods which are used to
estimate these quantities, regardless of the details of the astrophysics close
to the black hole. Once these methods have been outlined, we work through an
outburst of a black hole X-ray binary system, estimating the flow of mass and
energy through the different accretion rates and states. While we focus on
feedback from stellar mass black holes in X-ray binary systems, we also
consider the applicability of what we have learned to supermassive black holes
in active galactic nuclei. As an important control sample we also review the
coupling between accretion and feedback in neutron stars, and show that it is
very similar to that observed in black holes, which strongly constrains how
much of the astrophysics of feedback can be unique to black holes.Comment: To be published in Haardt et al. Astrophysical Black Holes. Lecture
Notes in Physics. Springer 201
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