Modeling of residual spheres for subduction zone earthquakes: 1. Apparent slab penetration signatures in the NW Pacific caused by deep diffuse mantle anomalies

We have computed focal residual spheres for 145 subduction zone earthquakes along the northwest edge of the Pacific using regional and global mantle velocity models from tomographic inversions. The mantle models explain much of the observed residual sphere data and, to a certain extent, suggest the location of mantle velocity heterogeneities which are responsible for various residual sphere patterns. For most deep events considered, the fast slablike residual sphere anomalies are caused by diffuse heterogeneities, mainly of deep lower mantle and receiver mantle origin rather than by an extension of the slab. The region immediately below the deepest earthquakes, depths of 650–1500 km, has an effect usually smaller than or comparable to the effect of other regions of the mantle. Without a proper account of the teleseismic effect, attributing the long-wavelength anomalies of the residual sphere to near-source slab effects alone, or even primarily, is not valid. The fast bands in many observed residual spheres agree with seismicity trends. Once the deep mantle and receiver mantle effects are removed, these may give the approximate orientation, but not the depth extent, of near-source fast velocities. For most deep earthquakes under Japan the predominant fast band is subhorizontal rather than near vertical. This type feature would be overlooked in conventional residual sphere studies using only steeply diving rays and cosine weighting of the data

P and S Wave Travel Time Inversions for Subducting Slab Under the Island Arcs of the Northwest Pacific

We have observed slablike high P and S velocity anomalies around the Wadati-Benioff zone under island arcs of the northwest Pacific through travel time tomographic inversions. Nineteen years of International Seismological Centre travel time residuals for events and stations in this large region are used. Analyses of resolution and noise show that the images are generally well resolved. The images illustrate that slab anomalies are continuous along strike in most parts of the upper mantle of the region and become contorted and generally broadened with depth. Near the bottom of the upper mantle, fingering of the slabs, including segmenting and spreading, is indicated. The fast anomalies associated with the Japan, Izu-Bonin, and Mariana subduction zones tend to flatten to subhorizontal at depth, while downward spreading may occur under parts of the Mariana and Kurile arcs. The fast anomalies below 700 km are not in the shape of a single coherent sheet. The principal compressional axes of focal mechanisms in the region consistently follow the downdip direction of the high-velocity slab, even when it bends to subhorizontal at depth. The depth at which compression begins to dominate the downdip stress regime in the slab apparently depends on bending of the slab and its dip. Slab fingering and intense deep seismicity probably are the consequence of the slab encountering a barrier of some form around the “670-km” discontinuity

Stochastic Biological System-of-Systems Modelling for iPSC Culture

Large-scale manufacturing of induced pluripotent stem cells (iPSCs) is essential for cell therapies and regenerative medicines. Yet, iPSCs form large cell aggregates in suspension bioreactors, resulting in insufficient nutrient supply and extra metabolic waste build-up for the cells located at core. Since subtle changes in micro-environment can lead to cell stress and heterogeneous cell population, a novel Biological System-of-Systems (Bio-SoS) framework is proposed to characterize cell-to-cell interactions, spatial heterogeneity, and cell response to micro-environmental variation. Building on stochastic metabolic reaction network, aggregation kinetics, and reaction-diffusion mechanisms, the Bio-SoS model can quantify the impact of factors (i.e., aggregate size) on cell product health and quality heterogeneity, accounting for causal interdependencies at individual cell, aggregate, and cell population levels. This framework can accurately predict iPSC culture conditions for both monolayer and aggregate cultures, where these predictions can be leveraged to ensure the control of culture processes for successful cell growth and expansion.Comment: 36 pages, 10 figure

Low temperature induces two growth-arrested stages and change of secondary metabolites in Bursaphelenchus xylophilus

The third-stage dispersal juvenile (JIII) is the stage for survival and dispersal in the winter of the pine wood nematode, Bursaphelenchus xylophilus. Through investigations at different temperatures, we found two kinds of growth-arrested development, including the adult longevity extension and JIII formation induced by low temperature. They showed similar characters: densely packed lipid droplets and extended longevity. We considered that there were four stages in the formation of growth-arrested stages: induction, growth-arrested pathway, growth-arrested development and cold-tolerance duration. Moreover, at 4◦C there were significant changes in secondary metabolites, which may be related to signal communication and metabolism associated with the formation of growth-arrested stages. The results suggested that low temperature was necessary for the dispersal of pine wood nematode and influenced distribution and intensity of pine wilt

Rapid Evolution of the Mitochondrial Genome in Chalcidoid Wasps (Hymenoptera: Chalcidoidea) Driven by Parasitic Lifestyles

Among the Chalcidoids, hymenopteran parasitic wasps that have diversified lifestyles, a partial mitochondrial genome has been reported only from Nasonia. This genome had many unusual features, especially a dramatic reorganization and a high rate of evolution. Comparisons based on more mitochondrial genomic data from the same superfamily were required to reveal weather these unusual features are peculiar to Nasonia or not. In the present study, we sequenced the nearly complete mitochondrial genomes from the species Philotrypesis. pilosa and Philotrypesis sp., both of which were associated with Ficus hispida. The acquired data included all of the protein-coding genes, rRNAs, and most of the tRNAs, and in P. pilosa the control region. High levels of nucleotide divergence separated the two species. A comparison of all available hymenopteran mitochondrial genomes (including a submitted partial genome from Ceratosolen solmsi) revealed that the Chalcidoids had dramatic mitochondrial gene rearrangments, involved not only the tRNAs, but also several protein-coding genes. The AT-rich control region was translocated and inverted in Philotrypesis. The mitochondrial genomes also exhibited rapid rates of evolution involving elevated nonsynonymous mutations

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ABSTRACT. Objective. Studying statistical gene-gene interactions (epistasis) has been limited by the difficulties in performance, both statistically and computationally, in large enough sample numbers to gain sufficient power. Three large Immunochip datasets from cohort samples recruited in the United Kingdom, United States, and Sweden with European ancestry were used to examine epistasis in rheumatoid arthritis (RA). Methods. A full pairwise search was conducted in the UK cohort using a high-throughput tool and the resultant significant epistatic signals were tested for replication in the United States and Swedish cohorts. A forward selection approach was applied to remove redundant signals, while conditioning on the preidentified additive effects. Results. We detected abundant genome-wide significant (p < 1.0e-13) epistatic signals, all within the MHC region. These signals were reduced substantially, but a proportion remained significant (p < 1.0e-03) in conditional tests. We identified 11 independent epistatic interactions across the entire MHC, each explaining on average 0.12% of the phenotypic variance, nearly all replicated in both replication cohorts. We also identified non-MHC epistatic interactions between RA susceptible loci LOC100506023 and IRF5 with Immunochip-wide significance (p < 1.1e-08) and between 2 neighboring single-nucleotide polymorphism near PTPN22 that were in low linkage disequilibrium with independent interaction (p < 1.0e-05). Both non-MHC epistatic interactions were statistically replicated with a similar interaction pattern in the US cohort only. Conclusion. There are multiple but relatively weak interactions independent of the additive effects in RA and a larger sample number is required to confidently assign additional non-MHC epistasis

The Equation of State and Quark Number Susceptibility in Hard-Dense-Loop Approximation

Based on the method proposed in [ H. S. Zong, W. M. Sun, Phys. Rev. \textbf{D 78}, 054001 (2008)], we calculate the equation of state (EOS) of QCD at zero temperature and finite quark chemical potential under the hard-dense-loop (HDL) approximation. A comparison between the EOS under HDL approximation and the cold, perturbative EOS of QCD proposed by Fraga, Pisarski and Schaffner-Bielich is made. It is found that the pressure under HDL approximation is generally smaller than the perturbative result. In addition, we also calculate the quark number susceptibility (QNS) at finite temperature and finite chemical potential under hard-thermal/dense-loop (HTL/HDL) approximation and compare our results with the corresponding ones in the previous literature.Comment: 12 pages, 3 figure

IL-6 is increased in the cerebellum of autistic brain and alters neural cell adhesion, migration and synaptic formation

<p>Abstract</p> <p>Background</p> <p>Although the cellular mechanisms responsible for the pathogenesis of autism are not understood, a growing number of studies have suggested that localized inflammation of the central nervous system (CNS) may contribute to the development of autism. Recent evidence shows that IL-6 has a crucial role in the development and plasticity of CNS.</p> <p>Methods</p> <p>Immunohistochemistry studies were employed to detect the IL-6 expression in the cerebellum of study subjects. <it>In vitro </it>adenoviral gene delivery approach was used to over-express IL-6 in cultured cerebellar granule cells. Cell adhesion and migration assays, DiI labeling, TO-PRO-3 staining and immunofluorescence were used to examine cell adhesion and migration, dendritic spine morphology, cell apoptosis and synaptic protein expression respectively.</p> <p>Results</p> <p>In this study, we found that IL-6 was significantly increased in the cerebellum of autistic subjects. We investigated how IL-6 affects neural cell development and function by transfecting cultured mouse cerebellar granule cells with an IL-6 viral expression vector. We demonstrated that IL-6 over-expression in granule cells caused impairments in granule cell adhesion and migration but had little effect on the formation of dendritic spines or granule cell apoptosis. However, IL-6 over-expression stimulated the formation of granule cell excitatory synapses, without affecting inhibitory synapses.</p> <p>Conclusions</p> <p>Our results provide further evidence that aberrant IL-6 may be associated with autism. In addition, our results suggest that the elevated IL-6 in the autistic brain could alter neural cell adhesion, migration and also cause an imbalance of excitatory and inhibitory circuits. Thus, increased IL-6 expression may be partially responsible for the pathogenesis of autism.</p

Non-Thermal X-ray Properties of Rotation Powered Pulsars and Their Wind Nebulae

We present a statistical study of the non-thermal X-ray emission of 27 young rotation powered pulsars (RPPs) and 24 pulsar wind nebulae (PWNe) by using the Chandra and the XMM-Newton observations, which with the high spatial resolutions enable us to spatially resolve pulsars from their surrounding PWNe. We obtain the X-ray luminosities and spectra separately for RPPs and PWNe, and then investigate their distribution and relation to each other as well as the relation with the pulsar rotational parameters. In the pair-correlation analysis we find that: (1) the X-ray (2-10 keV) luminosities of both pulsar and PWN (L_{psr} and L_{pwn}) display a strong correlation with pulsar spin down power Edot and characteristic age, and the scalings resulting from a simple linear fit to the data are L_{psr} \propto Edot^{0.92 \pm 0.04} and L_{pwn} \propto Edot^{1.45 \pm 0.08} (68% confidence level), respectively, however, both the fits are not statistically acceptable; (2) L_{psr} also shows a possible weak correlation with pulsar period P and period derivative Pdot, whereas L_{pwn} manifests a similar weak correlation with Pdot only; (3) The PWN photon index Gamma_{pwn} is positively correlated with L_{pwn} and L_{pwn}/Edot. We also found that the PWN X-ray luminosity is typically 1 to 10 times larger than that from the underlying pulsar, and the PWN photon indices span a range of ~1.5 to ~2. The statistic study of PWN spectral properties supports the particle wind model in which the X-ray emitting electrons are accelerated by the termination shock of the wind.Comment: 15 pages, 9 figures, 3 Tables, ApJ accepted version. Substantial revision, especially luminosity uncertainty taken into accounted and one fig added. Main conclusions unchange

Determination of dissolved nitric oxide in coastal waters of the Yellow Sea off Qingdao

We developed a new method for the determination of dissolved nitric oxide (NO) in discrete seawater samples based on the combination of a purge-and-trap setup and a fluorometric detection of NO. 2,3-diaminonaphthalene (DAN) reacts with NO in seawater to form the highly fluorescent 2,3-naphthotriazole (NAT). The fluorescence intensity was linear for NO concentrations in the range from 0.14 to 19 nmol L−1. We determined a detection limit of 0.068 nmol L−1, an average recovery coefficient of 83.8 % (80.2–90.0 %), and a relative standard deviation of ±7.2 %. With our method we determined for the first time the temporal and spatial distributions of NO surface concentrations in coastal waters of the Yellow Sea off Qingdao and in Jiaozhou Bay during a cruise in November 2009. The concentrations of NO varied from below the detection limit to 0.50 nmol L−1 with an average of 0.26 ± 0.14 nmol L−1. NO surface concentrations were generally enhanced significantly during daytime, implying that NO formation processes such as NO2− photolysis are much higher during daytime than chemical NO consumption, which, in turn, lead to a significant decrease in NO concentrations during nighttime. In general, NO surface concentrations and measured NO production rates were higher compared to previously reported measurements. This might be caused by the high NO2− surface concentrations encountered during the cruise. Moreover, additional measurements of NO production rates implied that the occurrence of particles and a temperature increase can enhance NO production rates. With the method introduced here, we have a reliable and comparably easy to use method at hand to measure oceanic NO surface concentrations, which can be used to decipher both its temporal and spatial distributions as well as its biogeochemical pathways in the oceans