Field-induced charge transport at the surface of pentacene single crystals: a method to study charge dynamics of 2D electron systems in organic crystals

A method has been developed to inject mobile charges at the surface of organic molecular crystals, and the DC transport of field-induced holes has been measured at the surface of pentacene single crystals. To minimize damage to the soft and fragile surface, the crystals are attached to a pre-fabricated substrate which incorporates a gate dielectric (SiO_2) and four probe pads. The surface mobility of the pentacene crystals ranges from 0.1 to 0.5 cm^2/Vs and is nearly temperature-independent above ~150 K, while it becomes thermally activated at lower temperatures when the induced charges become localized. Ruling out the influence of electric contacts and crystal grain boundaries, the results contribute to the microscopic understanding of trapping and detrapping mechanisms in organic molecular crystals.Comment: 14 pages, 4 figures. Submitted to J. Appl. Phy

Anharmonicity of flux lattices and thermal fluctuations in layered superconductors

We study elasticity of a perpendicular flux lattice in a layered superconductor with Josephson coupling between layers. We find that the energy contains ln(flux displacement) terms, so that elastic constants cannot be strictly defined. Instead we define effective elastic constants by a thermal average. The tilt modulus has terms with ln(T) which for weak fields, i.e. Josephson length smaller than the flux line spacing, lead to displacement square average proportional to T/ln(T). The expansion parameter indicates that the dominant low temperature phase transition is either layer decoupling at high fields or melting at low fields.Comment: 15 pages, 2 eps figures, Revtex, submitted to Phys. Rev. B. Sunj-class: superconductivit

Dynamics of allosteric transitions in GroEL

The chaperonin GroEL-GroES, a machine which helps some proteins to fold, cycles through a number of allosteric states, the $T$ state, with high affinity for substrate proteins (SPs), the ATP-bound $R$ state, and the $R^{\prime\prime}$ ($GroEL-ADP-GroES$) complex. Structures are known for each of these states. Here, we use a self-organized polymer (SOP) model for the GroEL allosteric states and a general structure-based technique to simulate the dynamics of allosteric transitions in two subunits of GroEL and the heptamer. The $T \to R$ transition, in which the apical domains undergo counter-clockwise motion, is mediated by a multiple salt-bridge switch mechanism, in which a series of salt-bridges break and form. The initial event in the $R \to R^{\prime\prime}$ transition, during which GroEL rotates clockwise, involves a spectacular outside-in movement of helices K and L that results in K80-D359 salt-bridge formation. In both the transitions there is considerable heterogeneity in the transition pathways. The transition state ensembles (TSEs) connecting the $T$, $R$, and $R^{\prime\prime}$ states are broad with the the TSE for the $T \to R$ transition being more plastic than the $R\to R^{\prime\prime}$ TSE. The results suggest that GroEL functions as a force-transmitting device in which forces of about (5-30) pN may act on the SP during the reaction cycle.Comment: 32 pages, 10 figures (Longer version than the one published

Decoupling Transition I. Flux Lattices in Pure Layered Superconductors

We study the decoupling transition of flux lattices in a layered superconductors at which the Josephson coupling J is renormalized to zero. We identify the order parameter and related correlations; the latter are shown to decay as a power law in the decoupled phase. Within 2nd order renormalization group we find that the transition is always continuous, in contrast with results of the self consistent harmonic approximation. The critical temperature for weak J is ~1/B, where B is the magnetic field, while for strong J it is~1/sqrt{B} and is strongly enhanced. We show that renormaliztion group can be used to evaluate the Josephson plasma frequency and find that for weak J it is~1/BT^2 in the decoupled phase.Comment: 14 pages, 5 figures. New sections III, V. Companion to following article on "Decoupling and Depinning II: Flux lattices in disordered layered superconductors

Disorder Induced Transitions in Layered Coulomb Gases and Superconductors

A 3D layered system of charges with logarithmic interaction parallel to the layers and random dipoles is studied via a novel variational method and an energy rationale which reproduce the known phase diagram for a single layer. Increasing interlayer coupling leads to successive transitions in which charge rods correlated in N>1 neighboring layers are nucleated by weaker disorder. For layered superconductors in the limit of only magnetic interlayer coupling, the method predicts and locates a disorder-induced defect-unbinding transition in the flux lattice. While N=1 charges dominate there, N>1 disorder induced defect rods are predicted for multi-layer superconductors.Comment: 4 pages, 2 figures, RevTe

Zero temperature geometric spin dephasing on a ring in presence of an Ohmic environment

We study zero temperature spin dynamics of a particle confined to a ring in presence of spin orbit coupling and Ohmic electromagnetic fluctuations. We show that the dynamics of the angular position $\theta(t)$ are decoupled from the spin dynamics and that the latter is mapped to certain correlations of a spinless particle. We find that the spin correlations in the $z$ direction (perpendicular to the ring) are finite at long times, i.e. do not dephase. The parallel (in plane) components for spin \half do not dephase at weak dissipation but they probably decay as a power law with time at strong dissipation.Comment: 5 pages, submitted to EP

Single vortex fluctuations in a superconducting chip as generating dephasing and spin flips in cold atom traps

We study trapping of a cold atom by a single vortex line in an extreme type II superconducting chip, allowing for pinning and friction. We evaluate the atom's spin flip rate and its dephasing due to the vortex fluctuations in equilibrium and find that they decay rapidly when the distance to the vortex exceeds the magnetic penetration length. We find that there are special spin orientations, depending on the spin location relative to the vortex, at which spin dephasing is considerably reduced while perpendicular directions have a reduced spin flip rate. We also show that the vortex must be perpendicular to the surface for a general shape vortex.Comment: 6 pages, 4 figure