Hierarchy of integrable Hamiltonians describing of nonlinear n-wave interaction

In the paper we construct an hierarchy of integrable Hamiltonian systems which describe the variation of n-wave envelopes in nonlinear dielectric medium. The exact solutions for some special Hamiltonians are given in terms of elliptic functions of the first kind.Comment: 17 page

Ion pairing in model electrolytes: A study via three particle correlation functions

A novel integral equations approach is applied for studying ion pairing in the restricted primitive model (RPM) electrolyte, i. e., the three point extension (TPE) to the Ornstein-Zernike integral equations. In the TPE approach, the three-particle correlation functions $g^{[3]}({\bf r}_{1},{\bf r}_{2},{\bf r}_{3})$ are obtained. The TPE results are compared to molecular dynamics (MD) simulations and other theories. Good agreement between TPE and MD is observed for a wide range of parameters, particularly where standard integral equations theories fail, i. e., low salt concentration and high ionic valence. Our results support the formation of ion pairs and aligned ion complexes.Comment: 43 pages (including 18 EPS figs) - RevTeX 4 - J. Chem. Phys. (in press

Inertial Range Scaling, Karman-Howarth Theorem and Intermittency for Forced and Decaying Lagrangian Averaged MHD in 2D

We present an extension of the Karman-Howarth theorem to the Lagrangian averaged magnetohydrodynamic (LAMHD-alpha) equations. The scaling laws resulting as a corollary of this theorem are studied in numerical simulations, as well as the scaling of the longitudinal structure function exponents indicative of intermittency. Numerical simulations for a magnetic Prandtl number equal to unity are presented both for freely decaying and for forced two dimensional MHD turbulence, solving directly the MHD equations, and employing the LAMHD-alpha equations at 1/2 and 1/4 resolution. Linear scaling of the third-order structure function with length is observed. The LAMHD-alpha equations also capture the anomalous scaling of the longitudinal structure function exponents up to order 8.Comment: 34 pages, 7 figures author institution addresses added magnetic Prandtl number stated clearl

Coupling of nitrogen-vacancy centers in diamond to a GaP waveguide

The optical coupling of guided modes in a GaP waveguide to nitrogen-vacancy (NV) centers in diamond is demonstrated. The electric field penetration into diamond and the loss of the guided mode are measured. The results indicate that the GaP-diamond system could be useful for realizing coupled microcavity-NV devices for quantum information processing in diamond.Comment: 4 pages 4 figure

COMMENTARY: Confronting Maternal Mortality Due to Postpartum Hemorrhage and Unsafe Abortion: A Call for Commitment

No Abstrac

SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures

Similarities in the 3D patterns of amino acid side chains can provide insights into their function despite the absence of any detectable sequence or fold similarities. Search for protein sites (SPRITE) and amino acid pattern search for substructures and motifs (ASSAM) are graph theoretical programs that can search for 3D amino side chain matches in protein structures, by representing the amino acid side chains as pseudo-atoms. The geometric relationship of the pseudo-atoms to each other as a pattern can be represented as a labeled graph where the pseudo-atoms are the graph's nodes while the edges are the inter-pseudo-atomic distances. Both programs require the input file to be in the PDB format. The objective of using SPRITE is to identify matches of side chains in a query structure to patterns with characterized function. In contrast, a 3D pattern of interest can be searched for existing occurrences in available PDB structures using ASSAM. Both programs are freely accessible without any login requirement. SPRITE is available at http://mfrlab.org/grafss/sprite/while ASSAM can be accessed at http://mfrlab.org/grafss/assam/

Z_2-Regge versus Standard Regge Calculus in two dimensions

We consider two versions of quantum Regge calculus. The Standard Regge Calculus where the quadratic link lengths of the simplicial manifold vary continuously and the Z_2-Regge Model where they are restricted to two possible values. The goal is to determine whether the computationally more easily accessible Z_2 model still retains the universal characteristics of standard Regge theory in two dimensions. In order to compare observables such as average curvature or Liouville field susceptibility, we use in both models the same functional integration measure, which is chosen to render the Z_2-Regge Model particularly simple. Expectation values are computed numerically and agree qualitatively for positive bare couplings. The phase transition within the Z_2-Regge Model is analyzed by mean-field theory.Comment: 21 pages, 16 ps-figures, to be published in Phys. Rev.

Asymptotically exact mean field theory for the Anderson model including double occupancy

The Anderson impurity model for finite values of the Coulomb repulsion $U$ is studied using a slave boson representation for the empty and doubly occupied $f$-level. In order to avoid well known problems with a naive mean field theory for the boson fields, we use the coherent state path integral representation to first integrate out the double occupancy slave bosons. The resulting effective action is linearized using {\bf two-time} auxiliary fields. After integration over the fermionic degrees of freedom one obtains an effective action suitable for a $1/N_f$-expansion. Concerning the constraint the same problem remains as in the infinite $U$ case. For $T \rightarrow 0$ and $N_f \rightarrow \infty$ exact results for the ground state properties are recovered in the saddle point approximation. Numerical solutions of the saddle point equations show that even in the spindegenerate case $N_f = 2$ the results are quite good.Comment: 19, RevTeX, cond-mat/930502

Reconstruction of protein structures from a vectorial representation

We show that the contact map of the native structure of globular proteins can be reconstructed starting from the sole knowledge of the contact map's principal eigenvector, and present an exact algorithm for this purpose. Our algorithm yields a unique contact map for all 221 globular structures of PDBselect25 of length $N \le 120$. We also show that the reconstructed contact maps allow in turn for the accurate reconstruction of the three-dimensional structure. These results indicate that the reduced vectorial representation provided by the principal eigenvector of the contact map is equivalent to the protein structure itself. This representation is expected to provide a useful tool in bioinformatics algorithms for protein structure comparison and alignment, as well as a promising intermediate step towards protein structure prediction.Comment: 4 pages, 1 figur