Robust nuclear lamina-based cell classification of aging and senescent cells

Changes in the shape of the nuclear lamina are exhibited in senescent cells, as well as in cells expressing mutations in lamina genes. To identify cells with defects in the nuclear lamina we developed an imaging method that quantifies the intensity and curvature of the nuclear lamina. We show that this method accurately describes changes in the nuclear lamina. Spatial changes in nuclear lamina coincide with redistribution of lamin A proteins and local reduction in protein mobility in senescent cell. We suggest that local accumulation of lamin A in the nuclear envelope leads to bending of the structure. A quantitative distinction of the nuclear lamina shape in cell populations was found between fresh and senescent cells, and between primary myoblasts from young and old donors. Moreover, with this method mutations in lamina genes were significantly distinct from cells with wild-type genes. We suggest that this method can be applied to identify abnormal cells during aging, in in vitro propagation, and in lamina disorders

Carbon-grain sublimation: a new top-down component of protostellar chemistry

Earth's carbon deficit has been an outstanding problem in our understanding of the formation of our Solar System. A possible solution would be the sublimation of carbon grains at the so-called soot line (~300 K) early in the planet-formation process. Here, we argue that the most likely signatures of this process are an excess of hydrocarbons and nitriles inside the soot line, and a higher excitation temperature for these molecules compared to oxygen-bearing complex organics that desorb around the water snowline (~100 K). Such characteristics have been reported in the literature, for example, in Orion KL, although not uniformly, potentially due to differences in observational settings and analysis methods of different studies or related to the episodic nature of protostellar accretion. If this process is active, this would mean that there is a heretofore unknown component to the carbon chemistry during the protostellar phase that is acting from the top down - starting from the destruction of larger species - instead of from the bottom up from atoms. In the presence of such a top-down component, the origin of organic molecules needs to be re-explored.Comment: Accepted for publication in ApJL. 14 pages, 2 figures, 1 table (4 pages

The young embedded disk L1527 IRS: constraints on the water snowline and cosmic ray ionization rate from HCO+ observations

The water snowline in circumstellar disks is a crucial component in planet formation, but direct observational constraints on its location remain sparse due to the difficulty of observing water in both young embedded and mature protoplanetary disks. Chemical imaging provides an alternative route to locate the snowline, and HCO$^+$ isotopologues have been shown to be good tracers in protostellar envelopes and Herbig disks. Here we present $\sim$0.5$^{\prime\prime}$ resolution ($\sim$35 au radius) Atacama Large Millimeter/submillimeter Array (ALMA) observations of HCO$^+$ $J=4-3$ and H$^{13}$CO$^+$ $J=3-2$ toward the young (Class 0/I) disk L1527 IRS. Using a source-specific physical model with the midplane snowline at 3.4 au and a small chemical network, we are able to reproduce the HCO$^+$ and H$^{13}$CO$^+$ emission, but for HCO$^+$ only when the cosmic ray ionization rate is lowered to $10^{-18}$ s$^{-1}$. Even though the observations are not sensitive to the expected HCO$^+$ abundance drop across the snowline, the reduction in HCO$^+$ above the snow surface and the global temperature structure allow us to constrain a snowline location between 1.8 and 4.1 au. Deep observations are required to eliminate the envelope contribution to the emission and to derive more stringent constraints on the snowline location. Locating the snowline in young disks directly with observations of H$_2$O isotopologues may therefore still be an alternative option. With a direct snowline measurement, HCO$^+$ will be able to provide constraints on the ionization rate.Comment: Accepted for publication in ApJ, 15 pages, 6 figures and appendi

Temperature structures of embedded disks: young disks in Taurus are warm

The chemical composition of gas and ice in disks around young stars set the bulk composition of planets. In contrast to protoplanetary disks (Class II), young disks that are still embedded in their natal envelope (Class 0 and I) are predicted to be too warm for CO to freeze out, as has been confirmed observationally for L1527 IRS. To establish whether young disks are generally warmer than their more evolved counterparts, we observed five young (Class 0/I and Class I) disks in Taurus with the Atacama Large Millimeter/submillimeter Array (ALMA), targeting C$^{17}$O $2-1$, H$_2$CO $3_{1,2}-2_{1,1}$, HDO $3_{1,2}-2_{2,1}$ and CH$_3$OH $5_K-4_K$ transitions at $0.48^{\prime\prime} \times 0.31^{\prime\prime}$ resolution. The different freeze-out temperatures of these species allow us to derive a global temperature structure. C$^{17}$O and H$_2$CO are detected in all disks, with no signs of CO freeze-out in the inner $\sim$100 au, and a CO abundance close to $\sim$10$^{-4}$. H$_2$CO emission originates in the surface layers of the two edge-on disks, as witnessed by the especially beautiful V-shaped emission pattern in IRAS~04302+2247. HDO and CH$_3$OH are not detected, with column density upper limits more than 100 times lower than for hot cores. Young disks are thus found to be warmer than more evolved protoplanetary disks around solar analogues, with no CO freeze-out (or only in the outermost part of $\gtrsim$100 au disks) or CO processing. However, they are not as warm as hot cores or disks around outbursting sources, and therefore do not have a large gas-phase reservoir of complex molecules.Comment: Accepted for publication in ApJ. 19 pages, 11 figures, 3 tables (+ appendix

The VLA/ALMA Nascent Disk and Multiplicity (VANDAM) Survey of Orion Protostars IV. Unveiling the Embedded Intermediate-Mass Protostar and Disk within OMC2-FIR3/HOPS-370

We present ALMA (0.87~mm and 1.3~mm) and VLA (9~mm) observations toward the candidate intermediate-mass protostar OMC2-FIR3 (HOPS-370; L$_{bol}$~314~L$_{\odot}$) at $\sim$0.1" (40~au) resolution for the continuum emission and ~0.25" (100 au) resolution of nine molecular lines. The dust continuum observed with ALMA at 0.87~mm and 1.3~mm resolve a near edge-on disk toward HOPS-370 with an apparent radius of ~100 au. The VLA observations detect both the disk in dust continuum and free-free emission extended along the jet direction. The ALMA observations of molecular lines (H$_2$CO, SO, CH$_3$OH, $^{13}$CO, C$^{18}$O, NS, and H$^{13}$CN) reveal rotation of the apparent disk surrounding HOPS-370 orthogonal to the jet/outflow direction. We fit radiative transfer models to both the dust continuum structure of the disk and molecular line kinematics of the inner envelope and disk for the H$_2$CO, CH$_3$OH, NS, and SO lines. The central protostar mass is determined to be $\sim$2.5 M_sun with a disk radius of $\sim$94~au, when fit using combinations of the H$_2$CO, CH$_3$OH, NS, and SO lines, consistent with an intermediate-mass protostar. Modeling of the dust continuum and spectral energy distribution (SED) yields a disk mass of 0.035~M$_{\odot}$ (inferred dust+gas) and a dust disk radius of 62~au, thus the dust disk may have a smaller radius than the gas disk, similar to Class II disks. In order to explain the observed luminosity with the measured protostar mass, HOPS-370 must be accreting at a rate between 1.7 and 3.2$\times$10$^{-5}$~M$_{\odot}$~yr$^{-1}$.Comment: Accepted to ApJ; 51 pages, 12 Figures, 7 Table

The VLA/ALMA Nascent Disk and Multiplicity (VANDAM) Survey of Orion Protostars. IV. Unveiling the Embedded Intermediate-Mass Protostar and Disk within OMC2-FIR3/HOPS-370

We present ALMA (0.87 and 1.3 mm) and VLA (9 mm) observations toward the candidate intermediate-mass protostar OMC2-FIR3 (HOPS-370; L_(bol) ~ 314 L_⊙) at ~0."1 (40 au) resolution for the continuum emission and ~0."25 (100 au) resolution of nine molecular lines. The dust continuum observed with ALMA at 0.87 and 1.3 mm resolves a near edge-on disk toward HOPS-370 with an apparent radius of ~100 au. The VLA observations detect both the disk in dust continuum and free–free emission extended along the jet direction. The ALMA observations of molecular lines (H₂CO, SO, CH₃OH, ¹³CO, C¹⁸O, NS, and H¹³CN) reveal rotation of the apparent disk surrounding HOPS-370 orthogonal to the jet/outflow direction. We fit radiative transfer models to both the dust continuum structure of the disk and molecular line kinematics of the inner envelope and disk for the H₂CO, CH₃OH, NS, and SO lines. The central protostar mass is determined to be ~2.5 M_⊙ with a disk radius of ~94 au, when fit using combinations of the H₂CO, CH₃OH, NS, and SO lines, consistent with an intermediate-mass protostar. Modeling of the dust continuum and spectral energy distribution yields a disk mass of 0.035 M_⊙ (inferred dust+gas) and a dust disk radius of 62 au; thus, the dust disk may have a smaller radius than the gas disk, similar to Class II disks. In order to explain the observed luminosity with the measured protostar mass, HOPS-370 must be accreting at a rate of (1.7−3.2) × 10⁻⁵ M_⊙ yr⁻¹

Early Planet Formation in Embedded Disks (eDisk). II. Limited Dust Settling and Prominent Snow Surfaces in the Edge-on Class I Disk IRAS 04302+2247

While dust disks around optically visible, Class II protostars are found to be vertically thin, when and how dust settles to the midplane are unclear. As part of the Atacama Large Millimeter/submillimeter Array (ALMA) large program, Early Planet Formation in Embedded Disks, we analyze the edge-on, embedded, Class I protostar IRAS 04302+2247, also nicknamed the ``Butterfly Star." With a resolution of 0.05" (8~au), the 1.3 mm continuum shows an asymmetry along the minor axis which is evidence of an optically thick and geometrically thick disk viewed nearly edge-on. There is no evidence of rings and gaps, which could be due to the lack of radial substructure or the highly inclined and optically thick view. With 0.1" (16~au) resolution, we resolve the 2D snow surfaces, i.e., the boundary region between freeze-out and sublimation, for $^{12}$CO $J$=2--1, $^{13}$CO $J$=2--1, C$^{18}$O $J$=2--1, $H_{2}$CO $J$=$3_{0,3}$--$2_{0,2}$, and SO $J$=$6_{5}$--$5_{4}$, and constrain the CO midplane snow line to $\sim 130$ au. We find Keplerian rotation around a protostar of $1.6 \pm 0.4 M_{\odot}$ using C$^{18}$O. Through forward ray-tracing using RADMC-3D, we find that the dust scale height is $\sim 6$ au at a radius of 100~au from the central star and is comparable to the gas pressure scale height. The results suggest that the dust of this Class~I source has yet to vertically settle significantly.Comment: 33 pages, 21 figures. Accepted for publication in ApJ as one of the first-look papers of the eDisk ALMA Large Progra