X-ray Evaluation of the Marshall Grazing Incidence X-Ray Spectrometer (MaGIXS) Nickel-Replicated Mirrors

X-ray observations of astronomical objects provides diagnostics not available in any other wavelength regime, however the capability of making these observation at a high spatial resolution has proven challenging. Recently, NASA Marshall Space Flight Center (MSFC) has made good progress in employing computer numerical control (CNC) polishing techniques on electroless nickel mandrels as part of our replicated grazing incidence optics program. CNC polishing has afforded the ability to deterministically refine mandrel figure, thereby improving mirror performance. The Marshall Grazing Incidence X-ray Spectrometer (MaGIXS) is a MSFC-led sounding rocket instrument that is designed to make the first ever soft x-ray spectral observations of the Sun spatially resolved along a narrow slit. MaGIXS incorporates some of the first mirrors produced at MSFC using this polishing technique. Here we present the predicted mirror performance obtained from metrology, after completion of CNC polishing, as well as the results of X-ray tests performed on the MaGIXS telescope mirror before and after mounting

Companion: a web server for annotation and analysis of parasite genomes

Currently available sequencing technologies enable quick and economical sequencing of many new eukaryotic parasite (apicomplexan or kinetoplastid) species or strains. Compared to SNP calling approaches, de novo assembly of these genomes enables researchers to additionally determine insertion, deletion and recombination events as well as to detect complex sequence diversity, such as that seen in variable multigene families. However, there currently are no automated eukaryotic annotation pipelines offering the required range of results to facilitate such analyses. A suitable pipeline needs to perform evidence-supported gene finding as well as functional annotation and pseudogene detection up to the generation of output ready to be submitted to a public database. Moreover, no current tool includes quick yet informative comparative analyses and a first pass visualization of both annotation and analysis results. To overcome those needs we have developed the Companion web server (http://companion.sanger.ac.uk) providing parasite genome annotation as a service using a reference-based approach. We demonstrate the use and performance of Companion by annotating two Leishmania and Plasmodium genomes as typical parasite cases and evaluate the results compared to manually annotated references

On the Alignment and Focusing of the Marshall Grazing Incidence X-ray Spectrometer (MaGIXS)

The Marshall Grazing Incidence X-ray Spectrometer (MaGIXS) is a NASA sounding rocket instrument that is designed to observe soft X-ray emissions from 24 - 6.0 A (0.5 - 2.0 keV energies) in the solar atmosphere. For the rst time, high-temperature, low-emission plasma will be observed directly with 5 arcsecond spatial resolution and 22 mA spectral resolution. The unique optical design consists of a Wolter - I telescope and a 3-optic grazing- incidence spectrometer. The spectrometer utilizes a nite conjugate mirror pair and a blazed planar, varied line spaced grating, which is directly printed on a silicon substrate using e-beam lithography. The grating design is being nalized and the grating will be fabricated by the Massachusetts Institute of Technology (MIT) and Izentis LLC. Marshall Space Flight Center (MSFC) is producing the nickel replicated telescope and spectrometer mirrors using the same facilities and techniques as those developed for the ART-XC and FOXSI mirrors. The Smithsonian Astrophysical Observatory (SAO) will mount and align the optical sub-assemblies based on previous experience with similar instruments, such as the Hinode X-Ray Telescope (XRT). The telescope and spectrometer assembly will be aligned in visible light through the implementation of a theodolite and reference mirrors, in addition to the centroid detector assembly (CDA) { a device designed to align the AXAF-I nested mirrors. Focusing of the telescope and spectrometer will be achieved using the X-ray source in the Stray Light Facility (SLF) at MSFC. We present results from an alignment sensitivity analysis performed on the on the system and we also discuss the method for aligning and focusing MaGIXS

The Pacific salmon explorer: a data driven look at salmon populations and their habitats

The lack of a centralized, standardized, and easily accessible repository of information on the state of natural resources, and threats to them, can undermine efforts to make informed, transparent, and evidenced-based management and conservation decisions. This is the case with Pacific salmon in British Columbia (BC), where a lack of information on the current status of salmon population and their habitats is undermining public confidence in the ability of government agencies to sustainability manage Pacific salmon populations. In an effort to provide broader public access to salmon datasets, the Pacific Salmon Foundation embarked on a major initiative to synthesize the best available information on Pacific salmon populations and their freshwater habitats throughout northern and central BC. Drawing upon these experiences, we illustrate how broadly available government datasets can be used to monitor and assess the status of salmon populations and their habitats. We show how large public datasets can help to provide information on a suite of indicators of salmon population condition including estimates of freshwater production, spawner abundance, harvest, trends in abundance, run-timing, population productivity, and assessments of biological status. This biological information is coupled with remote-sensed data that is used to quantify cumulative pressures on freshwater salmon habitats. All of this information is made available to the public through the Pacific Salmon Explorer (www.salmonexplorer.ca), an online data visualization tool that allows users to explore salmon-related information through a series of interactive maps and figures as well as download source datasets. While initially developed for northern and central BC, the PSF is now scaling the Pacific Salmon Explorer up to all salmon-bearing watersheds in BC, including those that enter into the Salish Sea. Our novel and scalable approach provides a model for how large quantities of disparate information can be compiled, analyzed, and communicated to decision-makers and the public

Hectospec, the MMT's 300 Optical Fiber-Fed Spectrograph

The Hectospec is a 300 optical fiber fed spectrograph commissioned at the MMT in the spring of 2004. A pair of high-speed six-axis robots move the 300 fiber buttons between observing configurations within ~300 s and to an accuracy ~25 microns. The optical fibers run for 26 m between the MMT's focal surface and the bench spectrograph operating at R~1000-2000. Another high dispersion bench spectrograph offering R~5,000, Hectochelle, is also available. The system throughput, including all losses in the telescope optics, fibers, and spectrograph peaks at ~10% at the grating blaze in 1" FWHM seeing. Correcting for aperture losses at the 1.5" diameter fiber entrance aperture, the system throughput peaks at $\sim$17%. Hectospec has proven to be a workhorse instrument at the MMT. Hectospec and Hectochelle together were scheduled for 1/3 of the available nights since its commissioning. Hectospec has returned \~60,000 reduced spectra for 16 scientific programs during its first year of operation.Comment: 68 pages, 28 figures, to appear in December 2005 PAS