Mapping rootable depth and root zone plant-available water holding capacity of the soil of sub-Saharan Africa

In rainfed crop production, root zone plant-available water holding capacity (RZ-PAWHC) of the soil has a large influence on crop growth and the yield response to management inputs such as improved seeds and fertilisers. However, data are lacking for this parameter in sub-Saharan Africa (SSA). This study produced the first spatially explicit, coherent and complete maps of the rootable depth and RZ-PAWHC of soil in SSA. We compiled georeferenced data from 28,000 soil profiles from SSA, which were used as input for digital soil mapping (DSM) techniques to produce soil property maps of SSA. Based on these soil properties, we developed and parameterised (pedotransfer) functions, rules and criteria to evaluate soil water retention at field capacity and wilting point, the soil fine earth fraction from coarse fragments content and, for maize, the soil rootability (relative to threshold values) and rootable depth. Maps of these secondary soil properties were derived using the primary soil property maps as input for the evaluation rules and the results were aggregated over the rootable depth to obtain a map of RZ-PAWHC, with a spatial resolution of 1 km2. The mean RZ-PAWHC for SSA is 74mm and the associated average root zone depth is 96 cm. Pearson correlation between the two is 0.95. RZ-PAWHC proves most limited by the rootable depth but is also highly sensitive to the definition of field capacity. The total soil volume of SSA potentially rootable by maize is reduced by one third (over 10,500 km3) due to soil conditions restricting root zone depth. Of these, 4800 km3 are due to limited depth of aeration, which is the factor most severely limiting in terms of extent (km2), and 2500 km3 due to sodicity which is most severely limiting in terms of degree (depth in cm). Depth of soil to bedrock reduces the rootable soil volume by 2500 km3, aluminium toxicity by 600 km3, porosity by 120 km3 and alkalinity by 20 km3. The accuracy of the map of rootable depth and thus of RZ-PAWHC could not be validated quantitatively due to absent data on rootability and rootable depth but is limited by the accuracy of the primary soil property maps. The methodological framework is robust and has been operationalised such that the maps can easily be updated as additional data become available

Mapping rootable depth and root zone plant-available water holding capacity of the soil of sub-Saharan Africa

In rainfed crop production, root zone plant-available water holding capacity (RZ-PAWHC) of the soil has a large influence on crop growth and the yield response to management inputs such as improved seeds and fertilisers. However, data are lacking for this parameter in sub-Saharan Africa (SSA). This study produced the first spatially explicit, coherent and complete maps of the rootable depth and RZ-PAWHC of soil in SSA. We compiled georeferenced data from 28,000 soil profiles from SSA, which were used as input for digital soil mapping (DSM) techniques to produce soil property maps of SSA. Based on these soil properties, we developed and parameterised (pedotransfer) functions, rules and criteria to evaluate soil water retention at field capacity and wilting point, the soil fine earth fraction from coarse fragments content and, for maize, the soil rootability (relative to threshold values) and rootable depth. Maps of these secondary soil properties were derived using the primary soil property maps as input for the evaluation rules and the results were aggregated over the rootable depth to obtain a map of RZ-PAWHC, with a spatial resolution of 1 km2. The mean RZ-PAWHC for SSA is 74mm and the associated average root zone depth is 96 cm. Pearson correlation between the two is 0.95. RZ-PAWHC proves most limited by the rootable depth but is also highly sensitive to the definition of field capacity. The total soil volume of SSA potentially rootable by maize is reduced by one third (over 10,500 km3) due to soil conditions restricting root zone depth. Of these, 4800 km3 are due to limited depth of aeration, which is the factor most severely limiting in terms of extent (km2), and 2500 km3 due to sodicity which is most severely limiting in terms of degree (depth in cm). Depth of soil to bedrock reduces the rootable soil volume by 2500 km3, aluminium toxicity by 600 km3, porosity by 120 km3 and alkalinity by 20 km3. The accuracy of the map of rootable depth and thus of RZ-PAWHC could not be validated quantitatively due to absent data on rootability and rootable depth but is limited by the accuracy of the primary soil property maps. The methodological framework is robust and has been operationalised such that the maps can easily be updated as additional data become available

Global geographic and feature space coverage of temperature data in the context of spatio-temporal interpolation

<p>This article highlights the results of an assessment of representation and usability of global temperature station data for global spatio-temporal analysis. Datasets from the Global Surface Summary of Day (GSOD) and the European Climate Assessment &amp; Dataset (ECA&amp;D) were merged and consisted of 10,695 global stations for the year 2011. Three aspects of data quality were considered: (a) representation in the geographical domain, (b) representation in the feature space (based on the MaxEnt method), and (c) usability i.e. fitness of use for spatio-temporal interpolation based on cross-validation of spatio-temporal regression-kriging models. The results indicate significant clustering of meteorological stations in the combined data set in both geographical and feature space. The majority of the distribution of stations (84%) can be explained by population density and accessibility maps. Consequently, higher elevations areas and inaccessible areas that are sparsely populated are significantly under-represented. Under-representation also reflects on the results of spatio-temporal analysis. Spatio-temporal regression-kriging model of mean daily temperature using 8-day MODIS LST images, as covariate, produces average global accuracy of 2-3 °C. Prediction of temperature for polar areas and mountains is 2 times lower than for areas densely covered with meteorological stations. Balanced spatio-temporal regression models that account for station clustering are suggested.</p

Spatio-temporal interpolation of soil water, temperature, and electrical conductivity in 3D + T : The Cook Agronomy Farm data set

The paper describes a framework for modeling dynamic soil properties in 3-dimensions and time (3D + T) using soil data collected with automated sensor networks as a case study. Two approaches to geostatistical modeling and spatio-temporal predictions are described: (1) 3D + T predictive modeling using random forests algorithms, and (2) 3D + T kriging model after detrending the observations for depth-dependent seasonal effects. All the analyses used data from the Cook Agronomy Farm (37 ha), which includes hourly measurements of soil volumetric water content, temperature, and bulk electrical conductivity at 42 stations and five depths (0.3, 0.6, 0.9, 1.2, and 1.5 m), collected over five years. This data set also includes 2- and 3-dimensional, temporal, and spatio-temporal covariates covering the same area. The results of (strict) leave-one-station-out cross-validation indicate that both models accurately predicted soil temperature, while predictive power was lower for water content, and lowest for electrical conductivity. The kriging model explained 37%, 96%, and 18% of the variability in water content, temperature, and electrical conductivity respectively versus 34%, 93%, and 5% explained by the random forests model. A less rigorous simple cross-validation of the random forests model indicated improved predictive power when at least some data were available for each station, explaining 86%, 97%, and 88% of the variability in water content, temperature, and electrical conductivity respectively. The high difference between the strict and simple cross-validation indicates high temporal auto-correlation of values at measurement stations. Temporal model components (i.e. day of the year and seasonal trends) explained most of the variability in observations in both models for all three variables. The seamless predictions of 3D + T data produced from this analysis can assist in understanding soil processes and how they change through a season, under different land management scenarios, and how they relate to other environmental processes.</p

Mapping rootable depth and root zone plant-available water holding capacity of the soil of sub-Saharan Africa

In rainfed crop production, root zone plant-available water holding capacity (RZ-PAWHC) of the soil has a large influence on crop growth and the yield response to management inputs such as improved seeds and fertilisers. However, data are lacking for this parameter in sub-Saharan Africa (SSA). This study produced the first spatially explicit, coherent and complete maps of the rootable depth and RZ-PAWHC of soil in SSA. We compiled georeferenced data from 28,000 soil profiles from SSA, which were used as input for digital soil mapping (DSM) techniques to produce soil property maps of SSA. Based on these soil properties, we developed and parameterised (pedotransfer) functions, rules and criteria to evaluate soil water retention at field capacity and wilting point, the soil fine earth fraction from coarse fragments content and, for maize, the soil rootability (relative to threshold values) and rootable depth. Maps of these secondary soil properties were derived using the primary soil property maps as input for the evaluation rules and the results were aggregated over the rootable depth to obtain a map of RZ-PAWHC, with a spatial resolution of 1 km2. The mean RZ-PAWHC for SSA is 74mm and the associated average root zone depth is 96 cm. Pearson correlation between the two is 0.95. RZ-PAWHC proves most limited by the rootable depth but is also highly sensitive to the definition of field capacity. The total soil volume of SSA potentially rootable by maize is reduced by one third (over 10,500 km3) due to soil conditions restricting root zone depth. Of these, 4800 km3 are due to limited depth of aeration, which is the factor most severely limiting in terms of extent (km2), and 2500 km3 due to sodicity which is most severely limiting in terms of degree (depth in cm). Depth of soil to bedrock reduces the rootable soil volume by 2500 km3, aluminium toxicity by 600 km3, porosity by 120 km3 and alkalinity by 20 km3. The accuracy of the map of rootable depth and thus of RZ-PAWHC could not be validated quantitatively due to absent data on rootability and rootable depth but is limited by the accuracy of the primary soil property maps. The methodological framework is robust and has been operationalised such that the maps can easily be updated as additional data become available

Uncertainty quantification of interpolated maps derived from observations with different accuracy levels

Most practical applications of spatial interpolation ignore that some measurements may be more accurate than others. As a result all measurements are treated equally important, while it is intuitively clear that more accurate measurements should carry more weight than less accurate measurements. Geostatistics provides the tools to perform spatial interpolation using measurements with different accuracy levels. In this short paper we use these tools to explore the sensitivity of interpolated maps to differences in measurement accuracy for a case study on mapping topsoil clay content in Namibia using kriging with external drift (KED). We also compare the kriging variance maps and show how incorporation of different measurement accuracy levels influences estimation of the KED model parameters.</p

Mapping rootable depth and root zone plant-available water holding capacity of the soil of sub-Saharan Africa

In rainfed crop production, root zone plant-available water holding capacity (RZ-PAWHC) of the soil has a large influence on crop growth and the yield response to management inputs such as improved seeds and fertilisers. However, data are lacking for this parameter in sub-Saharan Africa (SSA). This study produced the first spatially explicit, coherent and complete maps of the rootable depth and RZ-PAWHC of soil in SSA. We compiled georeferenced data from 28,000 soil profiles from SSA, which were used as input for digital soil mapping (DSM) techniques to produce soil property maps of SSA. Based on these soil properties, we developed and parameterised (pedotransfer) functions, rules and criteria to evaluate soil water retention at field capacity and wilting point, the soil fine earth fraction from coarse fragments content and, for maize, the soil rootability (relative to threshold values) and rootable depth. Maps of these secondary soil properties were derived using the primary soil property maps as input for the evaluation rules and the results were aggregated over the rootable depth to obtain a map of RZ-PAWHC, with a spatial resolution of 1 km2. The mean RZ-PAWHC for SSA is 74mm and the associated average root zone depth is 96 cm. Pearson correlation between the two is 0.95. RZ-PAWHC proves most limited by the rootable depth but is also highly sensitive to the definition of field capacity. The total soil volume of SSA potentially rootable by maize is reduced by one third (over 10,500 km3) due to soil conditions restricting root zone depth. Of these, 4800 km3 are due to limited depth of aeration, which is the factor most severely limiting in terms of extent (km2), and 2500 km3 due to sodicity which is most severely limiting in terms of degree (depth in cm). Depth of soil to bedrock reduces the rootable soil volume by 2500 km3, aluminium toxicity by 600 km3, porosity by 120 km3 and alkalinity by 20 km3. The accuracy of the map of rootable depth and thus of RZ-PAWHC could not be validated quantitatively due to absent data on rootability and rootable depth but is limited by the accuracy of the primary soil property maps. The methodological framework is robust and has been operationalised such that the maps can easily be updated as additional data become available

Mapping rootable depth and root zone plant-available water holding capacity of the soil of sub-Saharan Africa

In rainfed crop production, root zone plant-available water holding capacity (RZ-PAWHC) of the soil has a large influence on crop growth and the yield response to management inputs such as improved seeds and fertilisers. However, data are lacking for this parameter in sub-Saharan Africa (SSA). This study produced the first spatially explicit, coherent and complete maps of the rootable depth and RZ-PAWHC of soil in SSA. We compiled geo-referenced data from 28,000 soil profiles from SSA, which were used as input for digital soil mapping (DSM) techniques to produce soil property maps of SSA. Based on these soil properties, we developed and parameterised (pedotransfer) functions, rules and criteria to evaluate soil water retention at field capacity and wilting point, the soil fine earth fraction from coarse fragments content and, for maize, the soil rootability (relative to threshold values) and rootable depth. Maps of these secondary soil properties were derived using the primary soil property maps as input for the evaluation rules and the results were aggregated over the rootable depth to obtain a map of RZ-PAWHC, with a spatial resolution of 1 km2. The mean RZ-PAWHC for SSA is 74 mm and the associated average root zone depth is 96 cm. Pearson correlation between the two is 0.95. RZ-PAWHC proves most limited by the rootable depth but is also highly sensitive to the definition of field capacity. The total soil volume of SSA potentially rootable by maize is reduced by one third (over 10,500 km3) due to soil conditions restricting root zone depth. Of these, 4800 km3 are due to limited depth of aeration, which is the factor most severely limiting in terms of extent (km2), and 2500 km3 due to sodicity which is most severely limiting in terms of degree (depth in cm). Depth of soil to bedrock reduces the rootable soil volume by 2500 km3, aluminium toxicity by 600 km3, porosity by 120 km3 and alkalinity by 20 km3. The accuracy of the map of rootable depth and thus of RZ-PAWHC could not be validated quantitatively due to absent data on rootability and rootable depth but is limited by the accuracy of the primary soil property maps. The methodological framework is robust and has been operationalised such that the maps can easily be updated as additional data become available

Pleistocene sea-level changes as a predictor for insular species richness?

Trabajo presentado en el el congreso Island Biology 2014 celebrado en Hawai del 7 al 11 de julio de 2014.Pleistocene sea level change significantly altered surface areas and degree of isolation of oceanic islands. Sea level falls during glacial periods led to increase of surface areas, emergence of guyots and a between islands within archipelagos was well as the distance to nearby continents, whereas interglacial sea level rises led to opposite effects. We test the hypothesis that the dynamics of such changes explains at least partly present day species richness. To this end we modelled the effect of sea level change for one glacial-interglacial cycle and derived unique metrics for each of 68 islands that describe maximum palaeo-area (pA), surface-area change(AC), maximum palaeo-distance and distance change. We then used these metrics along with present area, present distance, present altitude and island age as predictors for present-day gastropod richness in linear mixed models. We found when including continental oceanic islands (Seychelles) in our data set that pA and AC are significant predictors for species richness for nearly all chorological classes. When excluding the Seychelles we found pA remains the only significant predictor for endemic richness. In addition we found for the Canarian islands that islands that were formerly merged share significantly more species and multiple endemics than islands that had remained separated. We conclude that changes in the configuration f islands and archipelagos through time likely play a key role in determining current species richness through its influence on the ecological and evolutionary processes underlying community dynamics.Peer Reviewe