Ranking relations using analogies in biological and information networks

Analogical reasoning depends fundamentally on the ability to learn and generalize about relations between objects. We develop an approach to relational learning which, given a set of pairs of objects $\mathbf{S}=\{A^{(1)}:B^{(1)},A^{(2)}:B^{(2)},\ldots,A^{(N)}:B ^{(N)}\}$, measures how well other pairs A:B fit in with the set $\mathbf{S}$. Our work addresses the following question: is the relation between objects A and B analogous to those relations found in $\mathbf{S}$? Such questions are particularly relevant in information retrieval, where an investigator might want to search for analogous pairs of objects that match the query set of interest. There are many ways in which objects can be related, making the task of measuring analogies very challenging. Our approach combines a similarity measure on function spaces with Bayesian analysis to produce a ranking. It requires data containing features of the objects of interest and a link matrix specifying which relationships exist; no further attributes of such relationships are necessary. We illustrate the potential of our method on text analysis and information networks. An application on discovering functional interactions between pairs of proteins is discussed in detail, where we show that our approach can work in practice even if a small set of protein pairs is provided.Comment: Published in at http://dx.doi.org/10.1214/09-AOAS321 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org

Single spin asymmetries in inclusive hadron production from SIDIS to hadronic collisions: universality and phenomenology

In a perturbative QCD approach, with inclusion of spin and transverse momentum effects, experimental data on azimuthal asymmetries observed in polarized semi-inclusive deeply inelastic scattering and e+ e- annihilations can be used to determine the Sivers, transversity and Collins soft functions. By using these functions, within the same scheme, we predict p(transv. polarized) p -> h + X single spin asymmetries in remarkable agreement with RHIC experimental data.Comment: 5 pages, 6 ps figure

Lambda polarization in pp -> p\Lambda K^+ \pi^+\pi^-\pi^+\pi^-

We show that there is a correlation between the invariant mass of the produced \Lambda K^+, \Lambda K^+\pi^+\pi^- or \Lambda K^+ \pi^+\pi^-\pi^+\pi^- system in the exclusive reaction pp\to p\Lambda K^+\pi^+\pi^-\pi^+\pi^- and the longitudinal or transverse momentum of $\Lambda$. Together with the longitudinal and transverse momentum dependence of Lambda polarization observed in inclusive reactions, such a correlation implies a dependence of Lambda polarization on these invariant masses. The qualitative features of this dependence are consistent with the recent observation by E766 collaboration at BNL. A quantitative estimation has been made using an event generator for $pp$ collisions. A detailed comparison with the data is made.Comment: 10 pages with 3 figures, submitted to J. Phys.

Quantum Flux and Reverse Engineering of Quantum Wavefunctions

An interpretation of the probability flux is given, based on a derivation of its eigenstates and relating them to coherent state projections on a quantum wavefunction. An extended definition of the flux operator is obtained using coherent states. We present a "processed Husimi" representation, which makes decisions using many Husimi projections at each location. The processed Husimi representation reverse engineers or deconstructs the wavefunction, yielding the underlying classical ray structure. Our approach makes possible interpreting the dynamics of systems where the probability flux is uniformly zero or strongly misleading. The new technique is demonstrated by the calculation of particle flow maps of the classical dynamics underlying a quantum wavefunction.Comment: Accepted to EP

Phosphate post-treatment of cerium-based conversion coatings on Al 2024-T3

Phosphate post-treatment of cerium-based conversion coatings (CeCCs) on high strength aluminum alloys can significantly improve corrosion resistance. As-deposited CeCCs exhibit corrosion pits and salt tails across the specimen surface after 3 days of exposure, but post-treated CeCCs have withstood 14 days of salt spray exposure without visibly corroding. The morphology, phase, and electrochemical properties of spray deposited CeCCs were affected by post-treatment parameters such as immersion time, solution temperature, and phosphate source. The best performing coatings were post-treated in aqueous orthophosphate solutions for at least 5 min at temperatures of at least 85⁰C. These conditions converted cerium hydroxy/peroxy species in the as-deposited CeCC to hydrated CePO₄ and minimized cracks in the coating. Despite demonstrating the kinetic dependence of processes active during post-treatment, these results suggested that the corrosion resistance of CeCCs was dependent on the coating phase and morphology. Using an aqueous precipitation technique, hydrated CePO₄ coatings were directly deposited onto Al 2024-T3 substrates and compared to as-deposited and post-treated CeCCs. After salt spray exposure, analysis revealed the formation of pits in the alloy where the substrate was exposed by cracks in the directly deposited CePO₄ coating. Post-treated CeCC specimens did not exhibit corrosion at crack/substrate interfaces, indicating that CeCCs can provide electrochemical protection. Post-treated CeCCs also formed an interfacial reaction layer at CeCC/substrate interfaces, a response not observed for directly deposited CePO₄ coatings or as-deposited CeCCs. These results demonstrate that post-treated CeCCs are not static barrier coatings, but respond actively to corrosion --Abstract, page iv

Modelling the effects of rehabilitation and changed agricultural practices in a saline-affected rural catchment

The Bremer river catchment, on the South-coast of Western Australia, is typical of most river catchments in this region in that it has been seriously affected by sedimentation, salinisation and eutrophication brought on by the gradual dominance of agricultural land management practices. Vegetated rehabilitation and changed agricultural land management practices (ie minimum / zero tillage) have now been widely adopted throughout the catchment in response to these degradation issues. This study examined the potential impact minimum / zero tillage, vegetated rehabilitation and remnant vegetation could have on both a farm and catchment wide scale. A Geographical Information System was developed to identify spatial variability evident throughout the catchment. Three zones were developed by the system to account for spatial variability. Field studies were undertaken to sample the surface runoff flow from areas under the Remnant Vegetation, Vegetated Rehabilitation and Minimum / Zero Tillage land management practice in each of the three zones. Runoff was sampled using a modified Gerlach trough. Runoff sampling was synchronised with the occurrence of the first rainfall I runoff event of the year. Phosphorus, sediment and salt concentrations were the main parameters analysed in the runoff samples collected. Following statistical analysis, the results for these parameters were extrapolated to a load per hectare figure. Further analysis of the catchment GIS was undertaken to determine the area of each zone and areas under each land practice in each zone. Two series of modelling scenarios, using the extrapolated load data, were used to determine the immediate and long term restorative effects increasing areas of vegetated rehabilitation could have on both a zone and catchment basis. This study concluded that minimum / zero tillage in the catchment, in combination with further wide-spread adoption of vegetated rehabilitation will have the capacity to reduce catchment degradation caused by eutrophication and sedimentation. Its extensive implementation can address these two forms of degradation by decreasing runoff concentrations of phosphorus and sediment. Salinity problems in the catchment will be indirectly effected through resulting changes to the groundwater table. Additional changes to current land management practices are also necessary for instance fertility testing and fertiliser application-on-need should be incorporated into the minimum / zero tillage land management practice if they haven\u27t been already