The Nature of the Optical Light in Seyfert 2 Galaxies with Polarized Continuum

We investigate the nature of the optical continuum and stellar population in the central kpc of the Seyfert 2s Mrk 348, Mrk 573, NGC 1358 and Mrk 1210 using long-slit spectra obtained along the radio or extended emission axis. These galaxies are known to have polarized continuum-including polarized broad lines in Mrk 348 and Mrk 1210--and previous studies indicate featureless continuum (FC) contributions in the 20-50% range at 5500 A. Nevertheless, our measurements of the equivalent widths of absorption lines and continuum ratios as a function of distance from the nuclei show no dilution of the lines nor bluening of the spectrum, as expected if a blue FC was present at the nucleus in the above proportions. We investigate one possibility to account for this effect: that the stellar population at the nucleus is the same as that from the surrounding bulge and dominates the nuclear light. A spectral analysis confirms that this hypothesis works for Mrk 348, NGC 1358 and Mrk 1210, for which we find stellar contributions at the nucleus larger than 90% at all wavelengths. We find that a larger stellar population contribution to the nuclear spectra can play the role of the ``second FC'' source inferred from previous studies. Stellar population synthesis shows that the nuclear regions of Mrk 348 and Mrk 1210 have important contributions of young to intermediate age stars (0--100 Myr), not present in templates of elliptical galaxies. In the case of Mrk 1210, this is further confirmed by the detection of a ``Wolf-Rayet feature'' in the nuclear emission-line spectrum.Comment: ApJ, accepted. Uses aaspp4.sty. [22 pages

COLA II - Radio and Spectroscopic Diagnostics of Nuclear Activity in Galaxies

We present optical spectroscopic observations of 93 galaxies taken from the infra-red selected COLA (Compact Objects in Low Power AGN) sample. The sample spans the range of far-IR luminosities from normal galaxies to LIRGs. Of the galaxies observed, 78 (84%) exhibit emission lines. Using a theoretically-based optical emission-line scheme we classify 15% of the emission-line galaxies as Seyferts, 77% as starbursts, and the rest are either borderline AGN/starburst or show ambiguous characteristics. We find little evidence for an increase in the fraction of AGN in the sample as a function of far-IR luminosity but our sample covers only a small range in infrared luminosity and thus a weak trend may be masked. As a whole the Seyfert galaxies exhibit a small, but significant, radio excess on the radio-FIR correlation compared to the galaxies classified as starbursts. Compact (<0.05'') radio cores are detected in 55% of the Seyfert galaxies, and these galaxies exhibit a significantly larger radio excess than the Seyfert galaxies in which cores were not detected. Our results indicate that there may be two distinct populations of Seyferts, ``radio-excess'' Seyferts, which exhibit extended radio structures and compact radio cores, and ``radio-quiet'' Seyferts, in which the majority of the radio emission can be attributed to star-formation in the host galaxy. No significant difference is seen between the IR and optical spectroscopic properties of Seyferts with and without radio cores. (Abridged)Comment: 24 pages, 4 figures, 6 tables. Accepted for publication in ApJ, February 200

Theoretical Modeling of Starburst Galaxies

We have modeled a large sample of infrared starburst galaxies using both the PEGASE v2.0 and STARBURST99 codes to generate the spectral energy distribution of the young star clusters. PEGASE utilizes the Padova group tracks while STARBURST99 uses the Geneva group tracks, allowing comparison between the two. We used our MAPPINGS III code to compute photoionization models which include a self-consistent treatment of dust physics and chemical depletion. We use the standard optical diagnostic diagrams as indicators of the hardness of the EUV radiation field in these galaxies. These diagnostic diagrams are most sensitive to the spectral index of the ionizing radiation field in the 1-4 Rydberg region. We find that warm infrared starburst galaxies contain a relatively hard EUV field in this region. The PEGASE ionizing stellar continuum is harder in the 1-4 Rydberg range than that of STARBURST99. As the spectrum in this regime is dominated by emission from Wolf-Rayet (W-R) stars, this difference is most likely due to the differences in stellar atmosphere models used for the W-R stars. We believe that the stellar atmospheres in STARBURST99 are more applicable to the starburst galaxies in our sample, however they do not produce the hard EUV field in the 1-4 Rydberg region required by our observations. The inclusion of continuum metal blanketing in the models may be one solution. Supernova remnant (SNR) shock modeling shows that the contribution by mechanical energy from SNRs to the photoionization models is << 20%. The models presented here are used to derive a new theoretical classification scheme for starbursts and AGN galaxies based on the optical diagnostic diagrams.Comment: 36 pages, 16 figures, to be published in ApJ, July 20, 200

Two-Dimensional Electronic Spectroscopy of Chlorophyll a: Solvent Dependent Spectral Evolution

The interaction of the monomeric chlorophyll Q-band electronic transition with solvents of differing physical-chemical properties is investigated through two-dimensional electronic spectroscopy (2DES). Chlorophyll constitutes the key chromophore molecule in light harvesting complexes. It is well-known that the surrounding protein in the light harvesting complex fine-tunes chlorophyll electronic transitions to optimize energy transfer. Therefore, an understanding of the influence of the environment on the monomeric chlorophyll electronic transitions is important. The Q-band 2DES is inhomogeneous at early times, particularly in hydrogen bonding polar solvents, but also in nonpolar solvents like cyclohexane. Interestingly this inhomogeneity persists for long times, even up to the nanosecond time scale in some solvents. The reshaping of the 2DES occurs over multiple time scales and was assigned mainly to spectral diffusion. At early times the reshaping is Gaussian-like, hinting at a strong solvent reorganization effect. The temporal evolution of the 2DES response was analyzed in terms of a Brownian oscillator model. The spectral densities underpinning the Brownian oscillator fitting were recovered for the different solvents. The absorption spectra and Stokes shift were also properly described by this model. The extent and nature of inhomogeneous broadening was a strong function of solvent, being larger in H-bonding and viscous media and smaller in nonpolar solvents. The fastest spectral reshaping components were assigned to solvent dynamics, modified by interactions with the solute

Water Dynamics at Protein Interfaces: Ultrafast Optical Kerr Effect Study

The behavior of water molecules surrounding a protein can have an important bearing on its structure and function. Consequently, a great deal of attention has been focused on changes in the relaxation dynamics of water when it is located at the protein surface. Here we use the ultrafast optical Kerr effect to study the H-bond structure and dynamics of aqueous solutions of proteins. Measurements are made for three proteins as a function of concentration. We find that the water dynamics in the first solvation layer of the proteins are slowed by up to a factor of 8 in comparison to those in bulk water. The most marked slowdown was observed for the most hydrophilic protein studied, bovine serum albumin, whereas the most hydrophobic protein, trypsin, had a slightly smaller effect. The terahertz Raman spectra of these protein solutions resemble those of pure water up to 5 wt % of protein, above which a new feature appears at 80 cm–1, which is assigned to a bending of the protein amide chain

First Results from the COLA Project- the Radio-FIR Correlation and Compact Radio Cores in Southern COLA Galaxies

We present the first results from the COLA (Compact Objects in Low-power AGN) project which aims to determine the relationship between one facet of AGN activity, the compact radio core, with star formation in the circumnuclear region of the host galaxy. This will be accomplished by the comparison of the multi-wavelength properties of a sample of AGN with compact radio cores to those of a sample of AGN without compact cores and a matched sample of galaxies without AGN. In this paper we discuss the selection criteria for our galaxy samples and present the initial radio observations of the 107 Southern galaxies in our sample. Low-resolution ATCA observations at 4.8, 2.5 and 1.4 GHz and high resolution, single baseline snapshots at 2.3 GHz with the Australian LBA are presented. We find that for the majority of the galaxies in our sample, the radio luminosity is correlated with the FIR luminosity. Compact radio cores are detected in 9 galaxies. The majority (8/9) of these galaxies exhibit a significant radio excess and 50% (7/14) of the galaxies which lie above the radio-FIR correlation by more than 1 sigma have compact radio cores. The emission from the cores is too weak to account for this radio excess and there is no evidence that the radio luminosity of the compact cores is correlated with the FIR galaxy luminosity. The galaxies with compact cores tend to be classified optically as AGN, with two thirds (6/9) exhibiting Seyfert-like optical emission line ratios, and the remaining galaxies classified either as composite objects (2/9) or starburst (1/9). (Abridged)Comment: 25 pages, including 6 figures and 4 tables, in Latex (uses emulateapj5.sty). Accepted for publication in Ap

Binary Galaxies in the Local Supercluster and Its Neighborhood

We report a catalog of 509 pairs identified among 10403 nearby galaxies with line-of-sight velocities V_LG < 3500 km/s.We selected binary systems in accordance with two criteria (bounding and temporal), which require the physical pair of galaxies to have negative total energy and its components to be located inside the zero-velocity surface. We assume that individual galaxy masses are proportional to their total K-band luminosities, M = L_K x 6M/L. The catalog gives the magnitudes and morphological types of galaxies and also the projected (orbital) masses and pair isolation indices. The component line-of-sight velocity differences and projected distances of the binary systems considered have power-law distributions with the median values of 35 km/s and 123 kpc, respectively. The median mass-to-K-band luminosity ratio is equal to 11 M/L, and its uncertainty is mostly due to the errors of measured velocities. Our sample of binary systems has a typical density contrast of d ro/ro_c ~ 500 and a median crossing time of about 3.5 Gyr. We point out the substantial fraction of binary systems consisting of late-type dwarf galaxies, where the luminosities of both components are lower than that of the Small Magellanic Cloud. The median projected distance for 41 such pairs is only 30 kpc, and the median difference of their line-of-sight velocities is equal to 14 km/s which is smaller than the typical error for radial-velocity (30 km/s). This specific population of gas-rich dwarf binary galaxies such as I Zw 18 may be at the stage immediately before merging of its components. Such objects, which are usually lost in flux-limited (and not distance-limited) samples deserve a thorough study in the HI radio line with high spatial and velocity resolution.Comment: published in Astrophysical Bulletin, 2008, Vol. 63, No. 4, pp. 299-34

Genomic DNA functions as a universal external standard in quantitative real-time PCR

Real-time quantitative PCR (qPCR) is a powerful tool for quantifying specific DNA target sequences. Although determination of relative quantity is widely accepted as a reliable means of measuring differences between samples, there are advantages to being able to determine the absolute copy numbers of a given target. One approach to absolute quantification relies on construction of an accurate standard curve using appropriate external standards of known concentration. We have validated the use of tissue genomic DNA as a universal external standard to facilitate quantification of any target sequence contained in the genome of a given species, addressing several key technical issues regarding its use. This approach was applied to validate mRNA expression of gene candidates identified from microarray data and to determine gene copies in transgenic mice. A simple method that can assist achieving absolute quantification of gene expression would broadly enhance the uses of real-time qPCR and in particular, augment the evaluation of global gene expression studies