A review of ammonia-oxidizing bacteria and archaea in Chinese soils

Ammonia (NH3) oxidation, the first and rate-limiting step of nitrification, is a key step in the global Nitrogen (N) cycle. Major advances have been made in recent years in our knowledge and understanding of the microbial communities involved ammonia oxidation in a wide range of habitats, including Chinese agricultural soils. In this mini-review, we focus our attention on the distribution and community diversity of ammonia-oxidizing bacteria (AOB) and ammonia oxidizing archaea (AOA) in Chinese soils with variable soil properties and soil management practices. The niche differentiation of AOB and AOA in contrasting soils have been functionally demonstrated using DNA-SIP (stable isotope probing) methods, which have shown that AOA dominate nitrification processes in acidic soils, while AOB dominated in neutral, alkaline and N-rich soils. Finally, we discuss the composition and activity of ammonia oxidizer in paddy soils, as well as the mitigation of the greenhouse gas nitrous oxide (N2O) emissions and nitrate leaching via inhibition of nitrification by both AOB and AOA

catena-Poly[[[diaqua­bis(1H-indole-3-acetato-κO)cobalt(II)]-μ-4,4′-bipyridine-κ2 N:N′] tetra­hydrate]

The 4,4′-bipyridine spacer in the title compound, [Co(C10H8NO2)2(C10H8N2)(H2O)2]·4H2O, links the diaqua­cobalt(II) dicarboxyl­ate units into a linear chain; the metal atom lies on a center of inversion in an octa­hedral environment. The coordinated and uncoordinated water mol­ecules inter­act through O—H⋯O hydrogen bonds to form a three-dimensional network

Opportunistic Wiretapping/Jamming: A New Attack Model in Millimeter-Wave Wireless Networks

While the millimeter-wave (mmWave) communication is robust against the conventional wiretapping attack due to its short transmission range and directivity, this paper proposes a new opportunistic wiretapping and jamming (OWJ) attack model in mmWave wireless networks. With OWJ, an eavesdropper can opportunistically conduct wiretapping or jamming to initiate a more hazardous attack based on the instantaneous costs of wiretapping and jamming. We also provide three realizations of the OWJ attack, which are mainly determined by the cost models relevant to distance, path loss and received power, respectively. To understand the impact of the new attack on mmWave network security, we first develop novel approximation techniques to characterize the irregular distributions of wiretappers, jammers and interferers under three OWJ realizations. With the help of the results of node distributions, we then derive analytical expressions for the secrecy transmission capacity to depict the network security performance under OWJ. Finally, we provide extensive numerical results to illustrate the effect of OWJ and to demonstrate that the new attack can more significantly degrade the network security performance than the pure wiretapping or jamming attack

Consistent responses of soil microbial taxonomic and functional attributes to mercury pollution across China

Background: The ecological consequences of mercury (Hg) pollution—one of the major pollutants worldwide—on microbial taxonomic and functional attributes remain poorly understood and largely unexplored. Using soils from two typical Hg-impacted regions across China, here, we evaluated the role of Hg pollution in regulating bacterial abundance, diversity, and co-occurrence network. We also investigated the associations between Hg contents and the relative abundance of microbial functional genes by analyzing the soil metagenomes from a subset of those sites. Results: We found that soil Hg largely influenced the taxonomic and functional attributes of microbial communities in the two studied regions. In general, Hg pollution was negatively related to bacterial abundance, but positively related to the diversity of bacteria in two separate regions. We also found some consistent associations between soil Hg contents and the community composition of bacteria. For example, soil total Hg content was positively related to the relative abundance of Firmicutes and Bacteroidetes in both paddy and upland soils. In contrast, the methylmercury (MeHg) concentration was negatively correlated to the relative abundance of Nitrospirae in the two types of soils. Increases in soil Hg pollution correlated with drastic changes in the relative abundance of ecological clusters within the co-occurrence network of bacterial communities for the two regions. Using metagenomic data, we were also able to detect the effect of Hg pollution on multiple functional genes relevant to key soil processes such as element cycles and Hg transformations (e.g., methylation and reduction). Conclusions: Together, our study provides solid evidence that Hg pollution has predictable and significant effects on multiple taxonomic and functional attributes including bacterial abundance, diversity, and the relative abundance of ecological clusters and functional genes. Our results suggest an increase in soil Hg pollution linked to human activities will lead to predictable shifts in the taxonomic and functional attributes in the Hg-impacted areas, with potential implications for sustainable management of agricultural ecosystems and elsewhere

Antibiotic resistance in urban green spaces mirrors the pattern of industrial distribution

Urban green spaces are closely related to the activities and health of urban residents. Turf grass and soil are two major interfaces between the environmental and human microbiome, which represent potential pathways for the spread of antibiotic resistance genes (ARGs) from environmental to human microbiome through skin-surface contact. However, the information regarding the prevalence of ARGs in urban green spaces and drivers in shaping their distribution patterns remain unclear. Here, we profiled a wide spectrum of ARGs in grass phyllosphere and soils from 40 urban parks across Greater Melbourne, Australia, using high throughput quantitative PCR. A total of 217 and 218 unique ARGs and MGEs were detected in grass phyllosphere and soils, respectively, conferring resistance to almost all major classes of antibiotics commonly used in human and animals. The plant microbiome contained a core resistome, which occupied > 84% of the total abundance of ARGs. In contrast, no core resistome was identified in the soil microbiome. The difference between plant and soil resistome composition was attributed to the difference in bacterial community structure and intensity of environmental and anthropogenic influence. Most importantly, the abundance of ARGs in urban green spaces was significantly positively related to industrial factors including total number of business, number of manufacturing, and number of electricity, gas, water and waste services in the region. Structural equation models further revealed that industrial distribution was a major factor shaping the ARG profiles in urban green spaces after accounting for multiple drivers. These findings have important implications for mitigation of the potential risks posed by ARGs to urban residents