Genetic Diversity in Hypericum and AFLP Markers for Species-Specific Identification of H. perforatum L.

One of the top-selling medicinal products worldwide is Hypericum perforatum (St. John\u27s Wort). Despite its cosmopolitan distribution and utilization, little is known regarding the relationship of the bioactive compounds in H. perforatum to the plants from which they are purportedly derived. In this study, amplified fragment length polymorphism (AFLP) analysis of 56 Hypericum accessions, representing 11 species, was conducted to gain a better understanding of diversity within Hypericum species, especially within cultivated accessions of H. perforatum, and to establish a molecular methodology that will provide breeders and regulators with a simple, affordable, and accurate tool with which to identify purported H. perforatummaterial. Utilizing four primer combinations, a total of 298 polymorphic markers were generated, of which 17 were present in all H. perforatum accessions and 2 were specific to only H. perforatum. This study demonstrates that AFLP can be utilized not only to determine the relationships of closely related Hypericumaccessions, but as a tool to authenticate material in herbal remedies through the use of genetic fingerprinting

ENABLING WARFARE AT THE SPEED OF LIGHT: A COMPARATIVE ANALYSIS OF MULTI-MISSION HIGH ENERGY LASER RADARS

This capstone report provides a cost effectiveness analysis of various radar systems capable of guiding the Multi-Mission High Energy Laser (MMHEL) from a Stryker platform. The Army's Rapid Capability and Critical Technologies Office (RCCTO) is developing the MMHEL to provide a Mobile Short-Range Air Defense (MSHORAD) capability to maneuver units. The MMHEL requires a radar to cue the fire control system for target engagement. Past efforts to employ high-energy lasers have relied on large, stationary radars for target acquisition. The reliance on such radars limits a unit's ability to maneuver and results in the laser being employed primarily from a defensive posture. To maximize maneuverability and enable the offensive employment of the MMHEL, the U.S. Army needs an on-platform radar that is compact and inexpensive enough to equip multiple Strykers within a Stryker Brigade Combat Team with the capability to engage targets from a mobile platform. The RCCTO is currently tasked with accelerating efforts to fill this need. The intent of this report is to assist the RCCTO in these efforts by generating a list of viable radar alternatives and conducting a cost effectiveness analysis to produce a recommendation of the most optimal solution. The results indicate that RADA's aCHR radar presents the best value in terms of cost and benefit to the warfighter.http://archive.org/details/enablingwarfarea1094564109Captain, United States ArmyCaptain, United States ArmyMajor, United States ArmyCaptain, United States ArmyCaptain, United States ArmyApproved for public release; distribution is unlimited

The inositol-3-phosphate synthase biosynthetic enzyme has distinct catalytic and metabolic roles

Inositol levels, maintained by the biosynthetic enzyme inositol-3-phosphate synthase (Ino1), are altered in a range of disorders including bipolar disorder and Alzheimer's disease. To date, most inositol studies have focused on the molecular and cellular effects of inositol depletion without considering Ino1 levels. Here we employ a simple eukaryote, Dictyostelium, to demonstrate distinct effects of loss of Ino1 and inositol depletion. We show that loss of Ino1 results in inositol auxotrophy that can only be partially rescued by exogenous inositol. Removal of inositol supplementation from the ino1- mutant results in a rapid 56% reduction in inositol levels, triggering the induction of autophagy, reduced cytokinesis and substrate adhesion. Inositol depletion also caused a dramatic generalised decrease in phosphoinositide levels that was rescued by inositol supplementation. However, loss of Ino1 triggered broad metabolic changes consistent with the induction of a catabolic state that was not rescued by inositol supplementation. These data suggest a metabolic role for Ino1 independent of inositol biosynthesis. To characterise this role, an Ino1 binding partner containing SEL1L1 domains (Q54IX5) was identified with homology to mammalian macromolecular complex adaptor proteins. Our findings therefore identify a new role for Ino1, independent of inositol biosynthesis, with broad effects on cell metabolism

p62-mediated Selective Autophagy Endows Virus-Transformed Cells With Insusceptibility to DNA Damage Under Oxidative Stress

DNA damage response (DDR) and selective autophagy both can be activated by reactive oxygen/nitrogen species (ROS/RNS), and both are of paramount importance in cancer development. The selective autophagy receptor and ubiquitin (Ub) sensor p62 plays a key role in their crosstalk. ROS production has been well documented in latent infection of oncogenic viruses including Epstein-Barr Virus (EBV). However, p62-mediated selective autophagy and its interplay with DDR have not been investigated in these settings. In this study, we provide evidence that considerable levels of p62-mediated selective autophagy are spontaneously induced, and correlate with ROS-Keap1-NRF2 pathway activity, in virus-transformed cells. Inhibition of autophagy results in p62 accumulation in the nucleus, and promotes ROS-induced DNA damage and cell death, as well as downregulates the DNA repair proteins CHK1 and RAD51. In contrast, MG132-mediated proteasome inhibition, which induces rigorous autophagy, promotes p62 degradation but accumulation of the DNA repair proteins CHK1 and RAD51. However, pretreatment with an autophagy inhibitor offsets the effects of MG132 on CHK1 and RAD51 levels. These findings imply that p62 accumulation in the nucleus in response to autophagy inhibition promotes proteasome-mediated CHK1 and RAD51 protein instability. This claim is further supported by the findings that transient expression of a p62 mutant, which is constitutively localized in the nucleus, in B cell lines with low endogenous p62 levels recaptures the effects of autophagy inhibition on CHK1 and RAD51 protein stability. These results indicate that proteasomal degradation of RAD51 and CHK1 is dependent on p62 accumulation in the nucleus. However, small hairpin RNA (shRNA)-mediated p62 depletion in EBV-transformed lymphoblastic cell lines (LCLs) had no apparent effects on the protein levels of CHK1 and RAD51, likely due to the constitutive localization of p62 in the cytoplasm and incomplete knockdown is insufficient to manifest its nuclear effects on these proteins. Rather, shRNA-mediated p62 depletion in EBV-transformed LCLs results in significant increases of endogenous RNF168-γH2AX damage foci and chromatin ubiquitination, indicative of activation of RNF168-mediated DNA repair mechanisms. Our results have unveiled a pivotal role for p62-mediated selective autophagy that governs DDR in the setting of oncogenic virus latent infection, and provide a novel insight into virus-mediated oncogenesis

It Pays to Be Bumpy: Drag Reducing Armor in The Pacific Spiny Lumpsucker, \u3cem\u3eEumicrotremus Orbis\u3c/em\u3e

Armor is a multipurpose set of structures that has evolved independently at least 30 times in fishes. In addition to providing protection, armor can manipulate flow, increase camouflage, and be sexually dimorphic. There are potential tradeoffs in armor function: increased impact resistance may come at the cost of maneuvering ability; and ornate armor may offer visual or protective advantages, but could incur excess drag. Pacific spiny lumpsuckers (Eumicrotremus orbis) are covered in rows of odontic, cone-shaped armor whorls, protecting the fish from wave driven impacts and the threat of predation. We are interested in measuring the effects of lumpsucker armor on the hydrodynamic forces on the fish. Bigger lumpsuckers have larger and more complex armor which may incur a greater hydrodynamic cost. In addition to their protective armor, lumpsuckers have evolved a ventral adhesive disc, allowing them to remain stationary in their environment. We hypothesize a tradeoff between the armor and adhesion: little fish prioritize suction while big fish prioritize protection. Using micro-CT we compared armor volume to disc area over lumpsucker development and built 3D models to measure changes in drag over ontogeny. We found that drag and drag coefficients decrease with greater armor coverage and vary consistently with orientation. Adhesive disc area is isometric but safety factor increases with size, allowing larger fish to remain attached in higher flows than smaller fish

Autonomous rover enables radar profiling of ice-fabric properties in Antarctica

A ground-penetrating radar is an extensively used geophysical tool in cryosphere sciences (ice sheets and glaciers) with sounding depths of several kilometers due to the small radio-wave attenuation in ice sheets. The detection of the ice thickness and internal ice stratigraphy with commercial radars has become standard. However, there is still an observational gap in determining dielectric and mechanical ice-fabric anisotropy and basal properties using these systems. Recently, a ground-based phase-coherent radar showed its potential to fill this gap. However, this requires that the corresponding ground-based radars cover profiles several tens of kilometers in length. We address this challenge by modifying an autonomous rover to collect phase-coherent, quad-polarimetric radar data geolocated with real-time kinematic (RTK) positioning. In a proof-of-concept study in Antarctica, we demonstrate that this allows the collection of quad-polarimetric data along a 23-km profile, mapping anisotropic ice-fabric properties at <100-m intervals across the transition of grounded to floating ice. This study shows the possibility of collecting data that will refine ice-flow models by providing missing rheological parameters. This work also demonstrates the versatility of the autonomous ground vehicle with its ability to tow more than 200-kg payload, with a battery run time of over 6 h, and with a modular design that enables future integration of different radars or other geophysical sensors

ELemental abundances of Planets and brown dwarfs Imaged around Stars (ELPIS): I. Potential Metal Enrichment of the Exoplanet AF Lep b and a Novel Retrieval Approach for Cloudy Self-luminous Atmospheres

AF Lep A+b is a remarkable planetary system hosting a gas-giant planet that has the lowest dynamical mass among directly imaged exoplanets. We present an in-depth analysis of the atmospheric composition of the star and planet to probe the planet's formation pathway. Based on new high-resolution spectroscopy of AF Lep A, we measure a uniform set of stellar parameters and elemental abundances (e.g., [Fe/H] = $-0.27 \pm 0.31$ dex). The planet's dynamical mass ($2.8^{+0.6}_{-0.5}$ M$_{\rm Jup}$) and orbit are also refined using published radial velocities, relative astrometry, and absolute astrometry. We use petitRADTRANS to perform chemically-consistent atmospheric retrievals for AF Lep b. The radiative-convective equilibrium temperature profiles are incorporated as parameterized priors on the planet's thermal structure, leading to a robust characterization for cloudy self-luminous atmospheres. This novel approach is enabled by constraining the temperature-pressure profiles via the temperature gradient $(d\ln{T}/d\ln{P})$, a departure from previous studies that solely modeled the temperature. Through multiple retrievals performed on different portions of the $0.9-4.2$ $\mu$m spectrophotometry, along with different priors on the planet's mass and radius, we infer that AF Lep b likely possesses a metal-enriched atmosphere ([Fe/H] $> 1.0$ dex). AF Lep b's potential metal enrichment may be due to planetesimal accretion, giant impacts, and/or core erosion. The first process coincides with the debris disk in the system, which could be dynamically excited by AF Lep b and lead to planetesimal bombardment. Our analysis also determines $T_{\rm eff} \approx 800$ K, $\log{(g)} \approx 3.7$ dex, and the presence of silicate clouds and dis-equilibrium chemistry in the atmosphere. Straddling the L/T transition, AF Lep b is thus far the coldest exoplanet with suggested evidence of silicate clouds.Comment: AJ, in press. Main text: Pages 1-32, Figures 1-15, Tables 1-6. All figures and tables after References belong to the Appendix (Pages 32-58, Figures 16-20, Table 7). For supplementary materials, please refer to the Zenodo repository https://doi.org/10.5281/zenodo.826746

Uncertainty in aerosol radiative forcing impacts the simulated global monsoon in the 20th century

Anthropogenic aerosols are dominant drivers of historical monsoon rainfall change. However, large uncertainties in the radiative forcing associated with anthropogenic aerosol emissions, and the dynamical response to this forcing, lead to uncertainty in the simulated monsoon response. We use historical simulations in which aerosol emissions are scaled by factors from 0.2 to 1.5 to explore the monsoon sensitivity to aerosol forcing uncertainty (−0.38 W m−2 to −1.50 W m−2). Hemispheric asymmetry in emissions generates a strong relationship between scaling factor and both hemispheric temperature contrast and meridional location of tropical rainfall. Increasing the scaling from 0.2 to 1.5 reduces the global monsoon area by 3 % and the global monsoon intensity by 2 % over the period 1950–2014, and switches the dominant influence on the 1950–1980 monsoon rainfall trend between greenhouse gas and aerosol. Regionally, aerosol scaling has a pronounced effect on Northern Hemisphere monsoon rainfall

Framework and guidelines for implementing the proposed IUCN Environmental Impact Classification for Alien Taxa (EICAT)

Recently, Blackburn et al. (2014) developed a simple, objective and transparent method for classifying alien taxa in terms of the magnitude of their detrimental environmental impacts in recipient areas. Here, we present a comprehensive framework and guidelines for implementing this method, which we term the Environmental Impact Classification for Alien Taxa, or EICAT. We detail criteria for applying the EICAT scheme in a consistent and comparable fashion, prescribe the supporting information that should be supplied along with classifications, and describe the process for implementing the method. This comment aims to draw the attention of interested parties to the framework and guidelines, and to present them in their entirety in a location where they are freely accessible to any potential users.Peer Reviewe

The Ensemble Photometric Variability of ~25000 Quasars in the Sloan Digital Sky Survey

Using a sample of over 25000 spectroscopically confirmed quasars from the Sloan Digital Sky Survey, we show how quasar variability in the rest frame optical/UV regime depends upon rest frame time lag, luminosity, rest wavelength, redshift, the presence of radio and X-ray emission, and the presence of broad absorption line systems. The time dependence of variability (the structure function) is well-fit by a single power law on timescales from days to years. There is an anti-correlation of variability amplitude with rest wavelength, and quasars are systematically bluer when brighter at all redshifts. There is a strong anti-correlation of variability with quasar luminosity. There is also a significant positive correlation of variability amplitude with redshift, indicating evolution of the quasar population or the variability mechanism. We parameterize all of these relationships. Quasars with RASS X-ray detections are significantly more variable (at optical/UV wavelengths) than those without, and radio loud quasars are marginally more variable than their radio weak counterparts. We find no significant difference in the variability of quasars with and without broad absorption line troughs. Models involving multiple discrete events or gravitational microlensing are unlikely by themselves to account for the data. So-called accretion disk instability models are promising, but more quantitative predictions are needed.Comment: 41 pages, 21 figures, AASTeX, Accepted for publication in Ap