Continuous data assimilation of large eddy simulation by lattice Boltzmann method and local ensemble transform Kalman filter (LBM-LETKF)

We investigate the applicability of the data assimilation (DA) to large eddy simulations (LESs) based on the lattice Boltzmann method (LBM). We carry out the observing system simulation experiment of a two-dimensional (2D) forced isotropic turbulence, and examine the DA accuracy of the nudging and the local ensemble transform Kalman filter (LETKF) with spatially sparse and noisy observation data of flow fields. The advantage of the LETKF is that it does not require computing spatial interpolation and/or an inverse problem between the macroscopic variables (the density and the pressure) and the velocity distribution function of the LBM, while the nudging introduces additional models for them. The numerical experiments with $256\times256$ grids and $10\%$ observation noise in the velocity showed that the root mean square error of the velocity in the LETKF with $8\times 8$ observation points ($\sim 0.1\%$ of the total grids) and 64 ensemble members becomes smaller than the observation noise, while the nudging requires an order of magnitude larger number of observation points to achieve the same accuracy. Another advantage of the LETKF is that it well keeps the amplitude of the energy spectrum, while only the phase error becomes larger with more sparse observation. We also see that a lack of observation data in the LETKF produces a spurious energy injection in high wavenumber regimes, leading to numerical instability. Such numerical instability is known as the catastrophic filter divergence problem, which can be suppressed by increasing the number of ensemble members. From these results, it was shown that the LETKF enables robust and accurate DA for the 2D LBM with sparse and noisy observation data.Comment: 27 pages, 14 figure

Generating observation guided ensembles for data assimilation with denoising diffusion probabilistic model

This paper presents an ensemble data assimilation method using the pseudo ensembles generated by denoising diffusion probabilistic model. Since the model is trained against noisy and sparse observation data, this model can produce divergent ensembles close to observations. Thanks to the variance in generated ensembles, our proposed method displays better performance than the well-established ensemble data assimilation method when the simulation model is imperfect

肝細胞癌に対する腫瘍融解ワクシニアウイルスJX-594と一過性免疫抑制の併用効果

科学研究費助成事業 研究成果報告書：若手研究(B)2015-2017課題番号 : 15K1931

Effective Potential of Higgs Field in Warped Gauge-Higgs Unification

The gauge-Higgs unification is one of influential scenarios to solve the hierarchy problem in the Standard Model. Recently, the scenario on the warped background attracts many attentions due to a large possibility to construct a realistic model naturally in this framework. It is, however, well known that the effective potential for the Higgs field, which is the most important prediction of the scenario, is not easy to calculate on the warped background, because masses of Kaluza-Klein particles are not obtained analytically. In this article, we derive useful formulae for the effective potential. The formulae allow us to calculate the Higgs mass easily, thus to construct a realistic model in the gauge-Higgs unification scenario on the warped background. Using obtained formulae, we calculate contributions from bulk fermions with several boundary conditions. We also show bulk fermions, which have boundary conditions not allowed in the orbifold picture, do not contribute to the effective potential.Comment: 28 pages, 6 figure

Stromal micropapillary component as a novel unfavorable prognostic factor of lung adenocarcinoma

<p>Abstract</p> <p>Background</p> <p>Pulmonary adenocarcinomas with a micropapillary component having small papillary tufts and lacking a central fibrovascular core are thought to result in poor prognosis. However, the component consists of tumor cells often floating within alveolar spaces (aerogenous micropapillary component [AMPC]) rather than invading fibrotic stroma observed in other organs like breast (stromal invasive micropapillary component [SMPC]). We previously observed cases of lung adenocarcinoma with predominant SMPC that was associated with micropapillary growth of tumors in fibrotic stroma observed in other organs. We evaluated the incidence and clinicopathological characteristics of SMPC in lung adenocarcinoma cases.</p> <p>Patients and Methods</p> <p>We investigated the clinicopathological characteristics and prognostic significance of SMPC in lung adenocarcinoma cases by reviewing 559 patients who had undergone surgical resection. We examined the SMPC by performing immunohistochemical analysis with 17 antibodies and by genetic analysis with epidermal growth factor receptor (<it>EGFR</it>) and <it>KRAS </it>mutations.</p> <p>Results</p> <p>SMPC-positive (SMPC(+)) tumors were observed in 19 cases (3.4%). The presence of SMPC was significantly associated with tumor size, advanced-stage disease, lymph node metastasis, pleural invasion, lymphatic invasion, and vascular invasion. Patients with SMPC(+) tumors had significantly poorer outcomes than those with SMPC-negative tumors. Multivariate analysis revealed that SMPC was a significant independent prognostic factor of lung adenocarcinoma, especially for disease-free survival of pathological stage I patients (<it>p </it>= 0.035). SMPC showed significantly higher expression of E-cadherin and lower expression of CD44 than the corresponding expression levels shown by AMPC and showed lower surfactant apoprotein A and phospho-c-Met expression level than corresponding expression levels shown by tumor cell components without a micropapillary component. Fourteen cases with SMPC(+) tumors (74%) showed <it>EGFR </it>mutations, and none of them showed <it>KRAS </it>mutations.</p> <p>Conclusions</p> <p>SMPC(+) tumors are rare, but they may be associated with a poor prognosis and have different phenotypic and genotypic characteristics from those of AMPC(+) tumors.</p> <p>Virtual Slides</p> <p>The virtual slide(s) for this article can be found here: <url>http://www.diagnosticpathology.diagnomx.eu/vs/9433341526290040</url>.</p

Relationship between Soil Chemical and Physical Properties and Vegetation in the Latest Decade of Alpine Grasslands of Southern Qinghai, China

The Tibetan Plateau is one of the most important ecosystems in the world (Yang et al. 2009), particularly because of the global importance of its climate (Tian et al. 2008; Wang et al. 2008). Grassland ecosystems on the plateau are sensitive to global change, because the plateau is located in marginal land areas where the growth and distribution of plants depend heavily on local climatic conditions (Zhang et al. 1996). The alpine grassland of Qinghai Province in China has been traditionally used for extensive grazing by sheep and yak (Bos grunniens), but is now degraded from overgrazing. This study investigated the relationship between soil chemical and physical properties and vegetation of alpine grasslands of southern Qinghai, China

Significance of volume embolization ratio as a predictor of recanalization on endovascular treatment of cerebral aneurysms with Guglielmi detachable coils

The purposes of this study are, firstly, to define the relationship between volume embolization ratio (VER) and degree of angiographical occlusion in endovascular treatment with Guglielmi detachable coils, and secondly, to examine influences of neck and dome sizes of aneurysms on the VER and the angiographical treatment result, and thirdly, to determine the relationship between the VER and the recanalization of coiled aneurysms. Fifty-two aneurysms in 46 patients were examined. VER ranged 8.1-31.9% (mean 18.5%). The mean VERs of each categories based on angiographical treatment results were 23.1% in complete occlusion, 16.1% in neck remnant and 12.2% in incomplete occlusion, respectively. The VER correlated significantly with both neck and dome size, while the angiographical treatment result was only affected by neck size. Five aneurysms showed aneurysmal recanalization among followed-up 41 aneurysms. All recanalized aneurysms were large, and their VERs were in range of 10.4-17.6%. Measurement of VER is useful to estimate the degree of occlusion objectively and to predict the aneurysmal recanalization. A small aneurysms with a small neck is relatively easy to achieve high VER and angiographical complete occlusion, with the consequence of less recanalization. On the other hand, a large aneurysm is liable to recanalize due to low VER, even if there was little filling of contrast medium in the aneurysmal cavity