937 research outputs found
Colour scales with climate in North American ratsnakes: a test of the thermal melanism hypothesis using community science images
Animal colour is a complex trait shaped by multiple selection pressures that can vary across geography. The thermal melanism hypothesis predicts that darker coloration is beneficial to animals in colder regions because it allows for more rapid solar absorption. Here, we use community science images of three closely related species of North American ratsnakes (genus Pantherophis) to examine if climate predicts colour variation across range-wide scales. We predicted that darker individuals are found in colder regions and higher elevations, in accordance with the thermal melanism hypothesis. Using an unprecedented dataset of over 8000 images, we found strong support for temperature as a key predictor of darker colour, supporting thermal melanism. We also found that elevation and precipitation are predictive of colour, but the direction and magnitude of these effects were more variable across species. Our study is the first to quantify colour variation in Pantherophis ratsnakes, highlighting the value of community science images for studying range-wide colour variation
Shifts in the Fecal Microbiota Associated with Adenomatous Polyps
BACKGROUND:
Adenomatous polyps are the most common precursor to colorectal cancer, the second leading cause of cancer-related death in the United States. We sought to learn more about early events of carcinogenesis by investigating shifts in the gut microbiota of patients with adenomas.
METHODS:
We analyzed 16S rRNA gene sequences from the fecal microbiota of patients with adenomas (n = 233) and without (n = 547).
RESULTS:
Multiple taxa were significantly more abundant in patients with adenomas, including Bilophila, Desulfovibrio, proinflammatory bacteria in the genus Mogibacterium, and multiple Bacteroidetes species. Patients without adenomas had greater abundances of Veillonella, Firmicutes (Order Clostridia), and Actinobacteria (family Bifidobacteriales). Our findings were consistent with previously reported shifts in the gut microbiota of colorectal cancer patients. Importantly, the altered adenoma profile is predicted to increase primary and secondary bile acid production, as well as starch, sucrose, lipid, and phenylpropanoid metabolism.
CONCLUSIONS:
These data hint that increased sugar, protein, and lipid metabolism along with increased bile acid production could promote a colonic environment that supports the growth of bile-tolerant microbes such as Bilophilia and Desulfovibrio In turn, these microbes may produce genotoxic or inflammatory metabolites such as H2S and secondary bile acids, which could play a role in catalyzing adenoma development and eventually colorectal cancer.
IMPACT:
This study suggests a plausible biological mechanism to explain the links between shifts in the microbiota and colorectal cancer. This represents a first step toward resolving the complex interactions that shape the adenoma-carcinoma sequence of colorectal cancer and may facilitate personalized therapeutics focused on the microbiota
Battery Earth: using the subsurface at Boulby underground laboratory to investigate energy storage technologies
Renewable energy provides a low-carbon alternative to power generation in the UK. However, the resultant supply varies on daily, weekly and seasonal cycles, such that for green energies to be fully exploited new grid-scale energy storage systems must be implemented. Two pilot facilities in Germany and the United States have demonstrated the potential of the Earth as a battery to store compressed air, using off-peak surplus energy. Natural accumulations of salt (halite deposits) in the UK represent a large and untapped natural storage reservoir for compressed air with the ability to provide instantaneous green energy to meet peak demand. To realise the potential of this emerging technology, a detailed knowledge of the relationship between mechanics, chemistry and geological properties is required to optimise cavern design, storage potential and economic feasibility. The variable stresses imposed on the rock matrix by gas storage, combined with the cyclic nature of cavern pressurisation are barriers to deployment that need to be addressed to enable large-scale adoption of schemes. Well-designed field experiments are a lynchpin for advancing research in this area, especially when supported by state-of-the-art characterisation and modelling techniques. The research facility at STFC’s Boulby Underground Laboratory presents the ideal location to tackle these fundamental issues to optimise “Battery Earth”
Resolving catastrophic error bursts from cosmic rays in large arrays of superconducting qubits
Scalable quantum computing can become a reality with error correction,
provided coherent qubits can be constructed in large arrays. The key premise is
that physical errors can remain both small and sufficiently uncorrelated as
devices scale, so that logical error rates can be exponentially suppressed.
However, energetic impacts from cosmic rays and latent radioactivity violate
both of these assumptions. An impinging particle ionizes the substrate,
radiating high energy phonons that induce a burst of quasiparticles, destroying
qubit coherence throughout the device. High-energy radiation has been
identified as a source of error in pilot superconducting quantum devices, but
lacking a measurement technique able to resolve a single event in detail, the
effect on large scale algorithms and error correction in particular remains an
open question. Elucidating the physics involved requires operating large
numbers of qubits at the same rapid timescales as in error correction, exposing
the event's evolution in time and spread in space. Here, we directly observe
high-energy rays impacting a large-scale quantum processor. We introduce a
rapid space and time-multiplexed measurement method and identify large bursts
of quasiparticles that simultaneously and severely limit the energy coherence
of all qubits, causing chip-wide failure. We track the events from their
initial localised impact to high error rates across the chip. Our results
provide direct insights into the scale and dynamics of these damaging error
bursts in large-scale devices, and highlight the necessity of mitigation to
enable quantum computing to scale
Updates on radiotherapy-immunotherapy combinations: Proceedings of 6(th) annual ImmunoRad conference
Focal radiation therapy (RT) has attracted considerable attention as a combinatorial partner for immunotherapy (IT), largely reflecting a well-defined, predictable safety profile and at least some potential for immunostimulation. However, only a few RT-IT combinations have been tested successfully in patients with cancer, highlighting the urgent need for an improved understanding of the interaction between RT and IT in both preclinical and clinical scenarios. Every year since 2016, ImmunoRad gathers experts working at the interface between RT and IT to provide a forum for education and discussion, with the ultimate goal of fostering progress in the field at both preclinical and clinical levels. Here, we summarize the key concepts and findings presented at the Sixth Annual ImmunoRad conference
Effects of antiplatelet therapy on stroke risk by brain imaging features of intracerebral haemorrhage and cerebral small vessel diseases: subgroup analyses of the RESTART randomised, open-label trial
Background
Findings from the RESTART trial suggest that starting antiplatelet therapy might reduce the risk of recurrent symptomatic intracerebral haemorrhage compared with avoiding antiplatelet therapy. Brain imaging features of intracerebral haemorrhage and cerebral small vessel diseases (such as cerebral microbleeds) are associated with greater risks of recurrent intracerebral haemorrhage. We did subgroup analyses of the RESTART trial to explore whether these brain imaging features modify the effects of antiplatelet therapy
Readout of a quantum processor with high dynamic range Josephson parametric amplifiers
We demonstrate a high dynamic range Josephson parametric amplifier (JPA) in
which the active nonlinear element is implemented using an array of rf-SQUIDs.
The device is matched to the 50 environment with a Klopfenstein-taper
impedance transformer and achieves a bandwidth of 250-300 MHz, with input
saturation powers up to -95 dBm at 20 dB gain. A 54-qubit Sycamore processor
was used to benchmark these devices, providing a calibration for readout power,
an estimate of amplifier added noise, and a platform for comparison against
standard impedance matched parametric amplifiers with a single dc-SQUID. We
find that the high power rf-SQUID array design has no adverse effect on system
noise, readout fidelity, or qubit dephasing, and we estimate an upper bound on
amplifier added noise at 1.6 times the quantum limit. Lastly, amplifiers with
this design show no degradation in readout fidelity due to gain compression,
which can occur in multi-tone multiplexed readout with traditional JPAs.Comment: 9 pages, 8 figure
Measurement-Induced State Transitions in a Superconducting Qubit: Within the Rotating Wave Approximation
Superconducting qubits typically use a dispersive readout scheme, where a
resonator is coupled to a qubit such that its frequency is qubit-state
dependent. Measurement is performed by driving the resonator, where the
transmitted resonator field yields information about the resonator frequency
and thus the qubit state. Ideally, we could use arbitrarily strong resonator
drives to achieve a target signal-to-noise ratio in the shortest possible time.
However, experiments have shown that when the average resonator photon number
exceeds a certain threshold, the qubit is excited out of its computational
subspace, which we refer to as a measurement-induced state transition. These
transitions degrade readout fidelity, and constitute leakage which precludes
further operation of the qubit in, for example, error correction. Here we study
these transitions using a transmon qubit by experimentally measuring their
dependence on qubit frequency, average photon number, and qubit state, in the
regime where the resonator frequency is lower than the qubit frequency. We
observe signatures of resonant transitions between levels in the coupled
qubit-resonator system that exhibit noisy behavior when measured repeatedly in
time. We provide a semi-classical model of these transitions based on the
rotating wave approximation and use it to predict the onset of state
transitions in our experiments. Our results suggest the transmon is excited to
levels near the top of its cosine potential following a state transition, where
the charge dispersion of higher transmon levels explains the observed noisy
behavior of state transitions. Moreover, occupation in these higher energy
levels poses a major challenge for fast qubit reset
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