Research Paper: Introducing Transthyretin as a differentially expressed protein in washing subtype of Obsessive- Compulsive Disorder

Introduction: Obsessive-Compulsive Disorder (OCD) as one of the important mental problems is valuable topic for proteomic research studies to better understand the underlying mechanisms of this disorder. Methods: In this paper, gel-based proteomic was used to investigate the proteome profile of 16 female patients with OCD, washing subtype before and after treatment with fluoxetine and comparing them with 20 healthy female controls. Results: One of the abnormally expressed protein spots in this study was introduced and examined for protein-protein interaction network analysis via Cytoscape and its plug-ins. Transthyretin (TTR) protein showed significant expression changes (fold change=1.7, P < 0.05). While the expression level of TTR is significantly decreased in OCD patients before any treatments, the trend is partially normalized after treatment with fluoxetine in positive responders. Furthermore, TTR interaction profile shows that the proteins interacting with this protein may get affected as this protein expression trend changes in OCD patients. Conclusion: TTR can be considered for further studies to be validated as a potential biomarker for OCD. © The Author(s)

Characterization of 1-Aminocyclopropane-1-Carboxylate (ACC) Deaminase-Containing Pseudomonas spp. in the Rhizosphere of Salt-Stressed Canola

When exposed to biotic or abiotic stress conditions, plants produce ethylene from its immediate precursor 1-aminocyclopropane-1- carboxylate (ACC), leading to retarded root growth and senescence. Many plant growth-promoting rhizobacteria contain the enzyme ACC deaminase and this enzyme can cleave ACC to form α-ketobutyrate and ammonium, thereby lowering levels of ethylene. The aim of this study was to isolate and characterize ACC deaminase-producing bacteria from the rhizosphere of salt-stressed canola (Brassica napus L.). Out of 105 random bacterial isolates, 15 were able to utilize ACC as the sole source of nitrogen. These 15 isolates were also positive for indole acetic acid (IAA) production. Phylogenetic analysis based on partial 16S rDNA sequences showed that all isolates belonged to fluorescent Pseudomonas spp. In the canola rhizosphere investigated in this study, Pseudomonas fluorescens was the dominant ACC deaminase-producing species. Cluster analysis based on BOX-A1R-based repetitive extragenic palindromic-polymerase chain reaction (BOX-PCR) patterns suggested a high degree of genetic variability in ACC deaminase-producing P. fluorescens strains. The presence of indigenous ACC-degrading bacteria in the rhizosphere of canola grown in saline soils indicates that these bacteria may contribute to salinity tolerance

The Effect of Demographic Factors and VKORC1 1639 G>A Genotypes on Estimated Warfarin Maintenance Dose in Iranian Patients Under Warfarin Therapy

Warfarin is an anticoagulant that inhibits vitamin K-dependent clotting factors including factor (F) II, FVII, FIX and FX. Different factors can change the effect of this anticoagulant in clinic. Therefore we assessed impact of VKORC1 -1639 G>A polymorphism and demographic factors on required maintenance dose in Iranian patients under warfarin therapy. The study population included 95 patients with a mean age of 61.3 ± 12.6 years. Target INR range of 2�3 was considered for these patients. The frequency of VKORC1 -1639 G>A polymorphism was assessed by polymerase chain reaction-restriction length polymorphism (PCR-RFLP). Finally the obtain data were analyzed by SPSS software. Our study revealed that 30.5, 49.5, and 20 of the patients had VKORC1 (G/G), (G/A), and (A/A) genotypes, respectively. Carriers of VKORC1 G/G genotype required a higher warfarin dose as compared to A/A carriers (4.48 ± 1.32 and 2.7 ± 1.16 mg/day, respectively; P A polymorphism and demographic variables had significant effects on warfarin maintenance dose in Iranian patients under warfarin therapy. © 2018, Indian Society of Hematology and Blood Transfusion

The Effect of Demographic Factors and VKORC1 1639 G>A Genotypes on Estimated Warfarin Maintenance Dose in Iranian Patients Under Warfarin Therapy

Warfarin is an anticoagulant that inhibits vitamin K-dependent clotting factors including factor (F) II, FVII, FIX and FX. Different factors can change the effect of this anticoagulant in clinic. Therefore we assessed impact of VKORC1 -1639 G>A polymorphism and demographic factors on required maintenance dose in Iranian patients under warfarin therapy. The study population included 95 patients with a mean age of 61.3 ± 12.6 years. Target INR range of 2�3 was considered for these patients. The frequency of VKORC1 -1639 G>A polymorphism was assessed by polymerase chain reaction-restriction length polymorphism (PCR-RFLP). Finally the obtain data were analyzed by SPSS software. Our study revealed that 30.5, 49.5, and 20 of the patients had VKORC1 (G/G), (G/A), and (A/A) genotypes, respectively. Carriers of VKORC1 G/G genotype required a higher warfarin dose as compared to A/A carriers (4.48 ± 1.32 and 2.7 ± 1.16 mg/day, respectively; P A polymorphism and demographic variables had significant effects on warfarin maintenance dose in Iranian patients under warfarin therapy. © 2018, Indian Society of Hematology and Blood Transfusion

The isolation and characterisation of antiplatelet antibodies.

NoThe isolation and characterisation of antiplatelet antibodies in autoimmune thrombocytopenia purpura patients (ITP) is described. Autoimmune thrombocytopenia purpura is an autoimmune disease, clinically defined by low platelet counts, normal or increased megakaryocytopoiesis and antiplatelet antibodies in serum. This study used phage display to isolate Fab antiplatelet antibodies to study the structure-function relationships of pathogenic antibodies in ITP. Out of six randomly selected colonies, four colonies reacted strongly with whole platelets in enzyme-linked immunosorbent assay (ELISA). Sequence analysis showed that all four colonies had the same DNA sequence and were the same antibody. Results of Western blotting against non-reduced human platelet lysate showed that the Fab reacted with platelet proteins with apparent molecular weights of 116, 92 and 39 kD. Furthermore, Western blotting assay against purified membrane glycoprotein IIIa demonstrated reactivity against a band with a molecular weight of 92 kD. Results from Western blotting against platelet lysate and pure platelet glycoprotein confirmed the Fab fragment recognised the platelet glycoprotein IIIa. Three out of the four phage colonies produced soluble Fab, which demonstrated reactivity against platelet autoantigens in ELISA. Further sequence analysis showed that the Fab was somatically mutated suggesting antigen drive and therefore T-cell assistance was important in the development of this antibody. One of the somatic mutations introduced an RSD amino acid sequence in the complementary determining region 1(CDR1) of the light chain, which may mimic the RGD motif of fibrinogen which binds integrin GPIIb/IIIa. This raises the possibility that somatic mutation and antigen drive have produced a pathogenic autoantibody

Boron Adsorption on Muscovite Mineral as a Function of pH, Ionic strength of Solution and Kinds of Cation

Introduction: Boron is one of the eight essential micronutrients required for plant growth and development. The optimal concentration range (between deficiency and phytotoxicity) for boron is narrower than for other plant essential nutrients. Generally, irrigating water containing concentrations of B greater than 1 mg L-1 would be detrimental for most plants. Although, there are a large number of different studies on the removal of B ions from aqueous solutions using different adsorbents, every special adsorbent material requires individual research. Information about the chemical behavior of muscovite for boron is very limited. Therefore, the objective of this study was to investigate boron adsorption on muscovite as a function of solution pH, ionic strength of the background electrolyte, kinds of cation, and initial boron concentration. Materials and Methods: The muscovite sample was obtained from a mine near Hamadan city in western Iran. It was powdered in a mortar and sieved before sorption experiment. Boron adsorption experiments were performed in batch systems using 15 mL polyethylene (PE) bottles in 0.01 M Ca(NO3)2 electrolyte solution at a adsorbent concentrations of 10 g L-1, and at room temperature (23±2 ◦C). All samples were prepared in duplicate. Blank samples (without adsorbent) were prepared for all experiments. For pH dependent B adsorption, aliquots of B stock solution (1000 mg L−1) were added to obtain initial B concentrations of 5 and 15 mg L-1. The pH of the solutions were adjusted to values of 6.8, 7.7 and 8.8 by adding negligible predetermined volumes of 0.03M NaOH or 0.03M HNO3 solution. To study the effects of kinds of cation on boron adsorption, samples of adsorbent (0.1 g) were mixed with 10 mL background electrolyte solutions (0.01M Ca(NO3)2, Mg(NO3)2 and NaNO3) in 15 mL centrifuge tubes. Then, predetermined amount of B were added to the centrifuge tubes to obtain final concentrations of 5 mg L-1 B. For determination of boron adsorption isotherm, after 10 ml 0.01 M of Ca(NO3)2 was transferred into 15 ml centrifuge tubes, 0.1 g sample of muscovite was added to obtain adsorbent concentration of 10 g L-1. Then a predetermined amount of boron from the stock solution was added to give final concentration range between 1 and 15 mg B per liter. Initial pH of the solution was adjusted to 8.2 ± 0.1 by predetermined amount of 0.03 M NaOH solution. Suspensions were then shaken for 24h. At the end of equilibrium time, final pH was measured in the suspensions and the tubes were then centrifuged for 10 min at 5000 g. Half of the supernatant volume (5 mL) was pipetted out from each tube and then B in the supernatants were measured using the colorimetric Azomethin-H method. The amount of B adsorbed on the adsorbent was calculated as the difference between the B concentration in the blanks and the concentration in the solution after equilibration. Chemical species in the solutions were also predicted using Visual MINTEQ, a chemical speciation program developed to simulate equilibrium processes in aqueous systems. Results and Discussion: The effect of pH on the amount of B retained depended on the initial B concentration. The amount of boron adsorption increased with increasing equilibrium pH. Boron adsorption on muscovite increased with increasing ionic strength. Greater adsorption was observed in the presence of Mg2+ as compared with Ca2+ at the same ionic strength. Calculations using Vminteq showed that the concentration of Mg-borate ion pairs (MgH2BO3+) were higher than the concentration of Ca and Na-borate ion pairs (CaH2BO3+ and NaH2BO3°). It thus seems that the much greater loss of B from solution observed in the Mg system was caused by Mg-borate ion pair adsorption. Sorption isotherm of B were well described by the Freundlich, Langmuir and Sips models but the Sips sorption model describes the interaction between B and the mineral better than the Langmuir model. On the basis of n value of Freundlich model, adsorption isotherm of boron on muscovite was classified as L-type (n≤ 1). This kind of adsorption behavior could be explained by the high affinity of the adsorbent for the adsorptive at low concentrations, which then decreases as concentration increases. Maximum sorption capacity (qmax) was obtained to be 13.98 mmol kg-1 for muscovite. Conclusion: The experimental data showed that less than 5% of initial boron concentration was adsorbed by muscovite, thus this mineral has not a reasonable adsorption capacity for B. Keywords: Boron, Adsorption, Muscovite, Speciation

Empirical models for the nonlinear rocking response of shallow foundations

This paper aims to introduce simple empirical models to describe the nonlinear behavior of shallow foundations under rocking vibration. The model is developed based on parametric numerical investigations of rectangular surface footings on homogenous dense dry sand, taking advantage of a nonlinear macro-element model verified based on a set of experimental results. The proposed empirical expressions include the moment-rotation backbone curve, stiffness degradation and equivalent damping ratio as well as the correlation of the foundation settlements with cumulated rotations. These expressions are provided mainly as a function of the rotation, static factor of safety and aspect ratio of foundation. Similar to previous researches, the uplift reference rotation was introduced as a normalization parameter for the new closed-form expressions to be expressed in a non-dimensional form, whenever possible. The proposed approach aimed to be simple, in order to minimize the dependence on the variable parameters, and to provide physically sound selections for engineering applications