Isolation and characterization of Bacillus thuringiensis (Ernst Berliner) strains indigenous to agricultural soils of Mali.

The objective of this work was to isolate and characterize Bacillus thuringiensis from agricultural and other insect breeding sites in Mali. A hundred soil samples were collected from Bamako district, Segou, Sikasso and Timbuktu regions. B. thuringiensis (Bt) was isolated from the samples using a heat-acetate method and the isolates were identified and classified using morphological and biochemical tests. The frequency of B. thuringiensis in soils was noted. The results showed that, 15 out of the 3111 bacterial isolates were putative Bt. thuringiensis. Most isolates produced parasporal crystals. The average Bt index for all the areas sampled was 5.1%; the highest frequency was recorded for Niono in Segou region (11.7) and the lowest for Bozola in Bamako district (0.5). Contrary the known information on the high content and distribution of B. in soils, the agricultural soils of Mali contain few Bt strains, confirmed by the low Bt index obtained

Bonnes pratiques agrícoles pour réduire le risque de contamination par l'aflatoxine dans la production d'Arachides au Mali.

L'arachide est un oléagineux très important pour l'alimentation humaine et animale, en tant que source d'énergie, de protéines, de vitamines et de minéraux. Cependant, les arachides sont sensibles à la contamination par les aflatoxines: substances toxiques produites par des champignons du genre Aspergillus, avec des effets cancérigènes, mutagènes et tératogènes. Dans ce contexte, les bonnes pratiques agricoles dans la production d'arachides visent à réduire le risque de contamination par les aflatoxines. Dans l'ensemble, la qualité et la sécurité de la production exigent des connaissances sur la gestion des cultures et post-récolte, afin d'éliminer les conditions favorables aux champignons producteurs d'aflatoxine dans les étapes de production, récolte, séchage sur le terrain, transport et stockage. Ce document vise à guider les agriculteurs, les techniciens et les autres parties intéressées à la production d'arachides en tant qu'aliment sûr, basé sur des informations techniques et scientifiques et des pratiques de terrain, rassemblées dans le cadre du projet Market Place dans un partenariat Brésil-Mali.bitstream/item/185825/1/DOC273-on-line.pd

Failure to Recognize Nontuberculous Mycobacteria Leads to Misdiagnosis of Chronic Pulmonary Tuberculosis

BACKGROUND: Nontuberculous mycobacterial (NTM) infections cause morbidity worldwide. They are difficult to diagnose in resource-limited regions, and most patients receive empiric treatment for tuberculosis (TB). Our objective here is to evaluate the potential impact of NTM diseases among patients treated presumptively for tuberculosis in Mali. METHODS: We re-evaluated sputum specimens among patients newly diagnosed with TB (naïve) and those previously treated for TB disease (chronic cases). Sputum microscopy, culture and Mycobacterium tuberculosis drug susceptibility testing were performed. Identification of strains was performed using molecular probes or sequencing of secA1 and/or 16S rRNA genes. RESULTS: Of 142 patients enrolled, 61 (43%) were clinically classified as chronic cases and 17 (12%) were infected with NTM. Eleven of the 142 (8%) patients had NTM disease alone (8 M. avium, 2 M. simiae and 1 M. palustre). All these 11 were from the chronic TB group, comprising 11/61 (18%) of that group and all were identified as candidates for second line treatment. The remaining 6/17 (35.30%) NTM infected patients had coinfection with M. tuberculosis and all 6 were from the TB treatment naïve group. These 6 were candidates for the standard first line treatment regimen of TB. M. avium was identified in 11 of the 142 (8%) patients, only 3/11 (27.27%) of whom were HIV positive. CONCLUSIONS: NTM infections should be considered a cause of morbidity in TB endemic environments especially when managing chronic TB cases to limit morbidity and provide appropriate treatment

Isolation and characterization of Bacillus thuringiensis (Ernst Berliner) strains indigenous to agricultural soils of Mali.

The objective of this work was to isolate and characterize Bacillus thuringiensis from agricultural and other insect breeding sites in Mali. A hundred soil samples were collected from Bamako district, Segou, Sikasso and Timbuktu regions. B. thuringiensis (Bt) was isolated from the samples using a heat-acetate method and the isolates were identified and classified using morphological and biochemical tests. The frequency of B. thuringiensis in soils was noted. The results showed that, 15 out of the 3111 bacterial isolates were putative Bt. thuringiensis. Most isolates produced parasporal crystals. The average Bt index for all the areas sampled was 5.1%; the highest frequency was recorded for Niono in Segou region (11.7) and the lowest for Bozola in Bamako district (0.5). Contrary the known information on the high content and distribution of B. in soils, the agricultural soils of Mali contain few Bt strains, confirmed by the low Bt index obtained.201

Identification and differentiation of Orseolia species in Nigeria as revealed by SCAR-PCR analysis

Identification and differentiation of Orseolia species in Nigeria was carried out using SCAR-PCR analysis. Twenty-three insects from 9 localities in Nigeria and three reference insects (Orseolia bonzii, Orseolia nwanzei and Orseolia oryzivora) were analyzed. Out of the 60 SCAR primers screened, only four produced clear amplified DNA fragments at annealing temperature of 55°C that differentiated all the 26 Orseolia species. Cluster analysis revealed two major insect genotypes (OSG-1 and OSG-2). The OSG-1 was further divided into two subgroups (OSG-1a and OSG-1b). Eleven insects were genotyped as OSG-1a, 14 as OSG-1b and one as OSG-2. Only NG1 and NG2 were identical among the insects of OSG-1a genotype. OSG-1b genotype produced two different groups of identical insects. While O. bonzii and O. oryzivora were genotyped as OSG-1b along with other twelve insects, only O. nwanzei was genotyped as OSG-2. OSG-1b genotype constitutes about 54% O. bonzii and O. oryzivora in Nigeria, OSG-2 genotype represents 4% of O. nwanzei in Nigeria while OSG-1a genotype covers 42% of yet unknown Orseolia species in Nigeria. This information would strongly assist breeding programmes aiming at effective development of cultivars with durable resistance to African rice gall midge (AfRGM) in Nigeria