Identification of growth trait related genes in a Yorkshire purebred pig population by genome-wide association studies

Objective The aim of this study is to identify genomic regions or genes controlling growth traits in pigs. Methods Using a panel of 54,148 single nucleotide polymorphisms (SNPs), we performed a genome-wide Association (GWA) study in 562 pure Yorshire pigs with four growth traits: average daily gain from 30 kg to 100 kg or 115 kg, and days to 100 kg or 115 kg. Fixed and random model Circulating Probability Unification method was used to identify the associations between 54,148 SNPs and these four traits. SNP annotations were performed through the Sus scrofa data set from Ensembl. Bioinformatics analysis, including gene ontology analysis, pathway analysis and network analysis, was used to identify the candidate genes. Results We detected 6 significant and 12 suggestive SNPs, and identified 9 candidate genes in close proximity to them (suppressor of glucose by autophagy [SOGA1], R-Spondin 2 [RSPO2], mitogen activated protein kinase kinase 6 [MAP2K6], phospholipase C beta 1 [PLCB1], rho GTPASE activating protein 24 [ARHGAP24], cytoplasmic polyadenylation element binding protein 4 [CPEB4], GLI family zinc finger 2 [GLI2], neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 [NYAP2], and zinc finger protein multitype 2 [ZFPM2]). Gene ontology analysis and literature mining indicated that the candidate genes are involved in bone, muscle, fat, and lung development. Pathway analysis revealed that PLCB1 and MAP2K6 participate in the gonadotropin signaling pathway and suggests that these two genes contribute to growth at the onset of puberty. Conclusion Our results provide new clues for understanding the genetic mechanisms underlying growth traits, and may help improve these traits in future breeding programs

Half-metallic ferrimagnets behavior of a new quaternary Heusler alloy CrCoScZ (Z = Si, Ge, Sn)

The structure, magnetism, electronic properties and Curie temperature of LiMgPdSn-type quaternary Heusler alloys, CrCoScZ (Z=Si, Ge, Sn), are intensively studied using first-principles calculations through generalized gradient approximation (GGA) within the density functional theory (DFT). We find that the new alloys are potential half-metallic ferrimagnets with stable lowest-energy structures and half-metallic gaps of about 0.7 eV at the Fermi level (EF). All alloys have a magnetic moment of 4 μB per primitive cell, in good agreement with the Slater–Pauling rule for half-metallic ferrimagnets with inverse-Heusler structures. The half-metallicity or high spin polarization can be reserved in transition-metal atom Cr–Sc swap disordered structures. The ferromagnetic coupling among the neighbor transition metals, the anti-ferromagnetic coupling among the next neighbor transition metals and the RKKY magnetic interaction referring to main group element play significant roles in the magnetism of CrCoScZ. Based on the mean field approximation, the Curie temperature is found to be higher than room temperature. Thus, CrCoScZ has potential applications in spin-injection devices

Structure, Magnetism, and Electronic Properties of Inverse Heusler Alloy Ti2CoAl/MgO(100) Herterojuction: The Role of Interfaces

In this study, the interface structures, atom-resolved magnetism, density of states, and spin polarization of 10 possible atomic terminations in the Ti2CoAl/MgO(100) heterojunction were comprehensively investigated using first-principle calculations. In the equilibrium interface structures, the length of the alloy-Mg bond was found to be much longer than that of the alloy-O bond because of the forceful repulsion interactions between theHeusler interface atoms andMg atoms. The competition among d-electronic hybridization, d-electronic localization, and the moving effect of the interface metal atoms played an important role in the interface atomic magnetic moment. Unexpected interface states appeared in the half-metallic gap for all terminations. The "ideal" half-metallicity observed in the bulk had been destroyed. In TiAl-Mg and AlAl-O terminations, the maximal spin polarization of about 65% could be reserved. The tunnel magnetoresistance (TMR) value was deduced to be lower than 150% in the Ti2CoAl/MgO(100) heterojunction at low temperature.Validerad;2018;Nivå 2;2018-12-05 (svasva)</p

Sub-seasonal soil moisture anomaly forecasting using combinations of deep learning, based on the reanalysis soil moisture records

Sub-seasonal drought forecasting is crucial for early warning in estimating agricultural production and optimizing irrigation management, as forecasting skills are relatively weak during this period. Soil moisture exhibits stronger persistence compared to other climate system quantities, which makes it especially influential in shaping land-atmosphere feedback, thus supplying a unique insight into drought forecasting. Relying on the soil moisture memory, this study investigates the combination of multiple deep-learning modules for sub-seasonal drought indices hindcast in the Huai River basin of China, using long-term ERA5-Land soil moisture records with a noise-assisted data analysis tool. The inter-compared deep-learning models include a hybrid model and a committee machine framework. The results show that the performance of the committee machine framework can be improved with the help of series decomposition and the forecasting skill is not impaired with the lead time increases. Overall, this study highlights the potential of combining deep-learning models with soil moisture memory analysis to improve sub-seasonal drought forecasting.Physical and Space GeodesyWater Resource

Erratum to: Performance evaluation of operational atmospheric correction algorithms over the East China Seas (Chinese Journal of Oceanology and Limnology, (2017), 35, 1, (1-22), 10.1007/s00343-016-5170-6)

Unfortunately for all articles of Vol. 35 No. 1 the future journal title “Journal of Oceanology and Limnology” was used instead of the current journal title “Chinese Journal of Oceanology and Limnology”. All articles in the issue are affected. Please make sure to cite the articles with the following Vol. and No. info: Chinese Journal of Oceanology and Limnology, Vol. 35 No. 1, [page range]