1,475 research outputs found
Stratified spatiotemporal chaos in anisotropic reaction-diffusion systems
Numerical simulations of two dimensional pattern formation in an anisotropic
bistable reaction-diffusion medium reveal a new dynamical state, stratified
spatiotemporal chaos, characterized by strong correlations along one of the
principal axes. Equations that describe the dependence of front motion on the
angle illustrate the mechanism leading to stratified chaos
Breathing Spots in a Reaction-Diffusion System
A quasi-2-dimensional stationary spot in a disk-shaped chemical reactor is
observed to bifurcate to an oscillating spot when a control parameter is
increased beyond a critical value. Further increase of the control parameter
leads to the collapse and disappearance of the spot. Analysis of a bistable
activator-inhibitor model indicates that the observed behavior is a consequence
of interaction of the front with the boundary near a parity breaking front
bifurcation.Comment: 4 pages RevTeX, see also http://chaos.ph.utexas.edu/ and
http://t7.lanl.gov/People/Aric
Four-phase patterns in forced oscillatory systems
We investigate pattern formation in self-oscillating systems forced by an
external periodic perturbation. Experimental observations and numerical studies
of reaction-diffusion systems and an analysis of an amplitude equation are
presented. The oscillations in each of these systems entrain to rational
multiples of the perturbation frequency for certain values of the forcing
frequency and amplitude. We focus on the subharmonic resonant case where the
system locks at one fourth the driving frequency, and four-phase rotating
spiral patterns are observed at low forcing amplitudes. The spiral patterns are
studied using an amplitude equation for periodically forced oscillating
systems. The analysis predicts a bifurcation (with increasing forcing) from
rotating four-phase spirals to standing two-phase patterns. This bifurcation is
also found in periodically forced reaction-diffusion equations, the
FitzHugh-Nagumo and Brusselator models, even far from the onset of oscillations
where the amplitude equation analysis is not strictly valid. In a
Belousov-Zhabotinsky chemical system periodically forced with light we also
observe four-phase rotating spiral wave patterns. However, we have not observed
the transition to standing two-phase patterns, possibly because with increasing
light intensity the reaction kinetics become excitable rather than oscillatory.Comment: 11 page
Cerebrospinal fluid HIV-1 RNA, intrathecal immunoactivation, and drug concentrations after treatment with a combination of saquinavir, nelfinavir, and two nucleoside analogues: the M61022 study
BACKGROUND: The way various antiretroviral drugs and drug combinations affect HIV-1 infection in the central nervous system is still largely unknown. The aim of this study was to determine the cerebrospinal fluid (CSF) steady-state concentrations of saquinavir and nelfinavir in relation to plasma concentrations, and to study their effect in combination with two nucleoside reverse transcriptase inhibitors (NRTIs) on CSF viral loads, intrathecal immunoactivation, and blood-brain barrier integrity. METHODS: Paired CSF and plasma samples from 8 antiretroviral-naĂŻve HIV-1 infected patients starting combination therapy with saquinavir, nelfinavir, and two nucleoside analogues were collected prior to treatment, and again after approximately 12 and 48 weeks of antiretroviral therapy. Additional plasma samples were taken at weeks 2, 4, 8, 24, and 36. The concentrations of protease inhibitors were analysed, as were levels of HIV-1 RNA, CD4+ T-cell count, ÎČ2-microglobulin, neopterin, albumin ratio, IgG index, and monocytic cell count. RESULTS: None of the patients in the study presented with HIV-1 RNA < 50 copies/mL in CSF or plasma prior to treatment, compared to 5/7 at the end of the study. Signs of cell-mediated intrathecal immunoactivation, measured by neopterin and ÎČ2-microglobulin, decreased significantly in both CSF and serum, although only 1/7 reached normal CSF neopterin levels after 48 weeks of treatment. There was no significant reduction of albumin ratio, IgG index or CSF monocytic cell count. Saquinavir median (range) concentrations were < 2.5 (< 2.5â96.0) nM unbound in plasma, and < 2.5 (< 2.5â9.0) nM total in CSF. Nelfinavir median (range) concentrations were 10.0 (< 2.0â31.0) nM unbound in plasma, and < 2.0 (< 2.0â23.0) nM total in CSF. Saquinavir and nelfinavir were detectable in 7/15 and 9/15 CSF samples, respectively. CONCLUSION: Saquinavir and nelfinavir, in combination with two NRTIs, decrease the CSF viral load and, to a lesser extent, intrathecal immunoactivation. We found reasonably high CSF concentrations of nelfinavir, but suboptimal concentrations of saquinavir
Modulated structures in electroconvection in nematic liquid crystals
Motivated by experiments in electroconvection in nematic liquid crystals with
homeotropic alignment we study the coupled amplitude equations describing the
formation of a stationary roll pattern in the presence of a weakly-damped mode
that breaks isotropy. The equations can be generalized to describe the planarly
aligned case if the orienting effect of the boundaries is small, which can be
achieved by a destabilizing magnetic field. The slow mode represents the
in-plane director at the center of the cell. The simplest uniform states are
normal rolls which may undergo a pitchfork bifurcation to abnormal rolls with a
misaligned in-plane director.We present a new class of defect-free solutions
with spatial modulations perpendicular to the rolls. In a parameter range where
the zig-zag instability is not relevant these solutions are stable attractors,
as observed in experiments. We also present two-dimensionally modulated states
with and without defects which result from the destabilization of the
one-dimensionally modulated structures. Finally, for no (or very small)
damping, and away from the rotationally symmetric case, we find static chevrons
made up of a periodic arrangement of defect chains (or bands of defects)
separating homogeneous regions of oblique rolls with very small amplitude.
These states may provide a model for a class of poorly understood stationary
structures observed in various highly-conducting materials ("prechevrons" or
"broad domains").Comment: 13 pages, 13 figure
Outbreak tracking of Aleutian mink disease virus (AMDV) using partial NS1 gene sequencing
Abstract Background Aleutian Mink Disease (AMD) is an infectious disease of mink (Neovison vison) and globally a major cause of economic losses in mink farming. The disease is caused by Aleutian Mink Disease Virus (AMDV) that belongs to the genus Amdoparvovirus within the Parvoviridae family. Several strains have been described with varying virulence and the severity of infection also depends on the hostâs genotype and immune status. Clinical signs include respiratory distress in kits and unthriftiness and low quality of the pelts. The infection can also be subclinical. Systematic control of AMDV in Danish mink farms was voluntarily initiated in 1976. Over recent decades the disease was mainly restricted to the very northern part of the country (Northern Jutland), with only sporadic outbreaks outside this region. Most of the viruses from this region have remained very closely related at the nucleotide level for decades. However, in 2015, several outbreaks of AMDV occurred at mink farms throughout Denmark, and the sources of these outbreaks were not known. Methods Partial NS1 gene sequencing, phylogenetic analyses data were utilized along with epidemiological to determine the origin of the outbreaks. Results The phylogenetic analyses of partial NS1 gene sequences revealed that the outbreaks were caused by two different clusters of viruses that were clearly different from the strains found in Northern Jutland. These clusters had restricted geographical distribution, and the variation within the clusters was remarkably low. The outbreaks on Zealand were epidemiologically linked and a close sequence match was found to two virus sequences from Sweden. The other cluster of outbreaks restricted to Jutland and Funen were linked to three feed producers (FP) but secondary transmissions between farms in the same geographical area could not be excluded. Conclusion This study confirmed that partial NS1 sequencing can be used in outbreak tracking to determine major viral clusters of AMDV. Using this method, two new distinct AMDV clusters with low intra-cluster sequence diversity were identified, and epidemiological data helped to reveal possible ways of viral introduction into the affected herds
Global phylogenetic analysis of contemporary aleutian mink disease viruses (AMDVs)
Abstract Background Aleutian mink disease has major economic consequences on the mink farming industry worldwide, as it causes a disease that affects both the fur quality and the health and welfare of the mink. The virus causing this disease is a single-stranded DNA virus of the genus Amdoparvovirus belonging to the family of Parvoviridae. In Denmark, infection with AMDV has largely been restricted to a region in the northern part of the country since 2001, affecting only 5% of the total Danish mink farms. However, in 2015 outbreaks of AMDV were diagnosed in all parts of the country. Initial analyses revealed that the out breaks were caused by two different strains of AMDV that were significant different from the circulating Danish strains. To track the source of these outbreaks, a major investigation of global AMDV strains was initiated. Methods Samples from 13 different countries were collected and partial NS1 gene was sequenced and subjected to phylogenetic analyses. Results The analyses revealed that AMDV exhibited substantial genetic diversity. No clear country wise clustering was evident, but exchange of viruses between countries was revealed. One of the Danish outbreaks was caused by a strain of AMDV that closely resembled a strain originating from Sweden. In contrast, we did not identify any potential source for the other and more widespread outbreak strain. Conclusion To the authors knowledge this is the first major global phylogenetic study of contemporary AMDV partial NS1 sequences. The study proved that partial NS1 sequencing can be used to distinguish virus strains belonging to major clusters. The partial NS1 sequencing can therefore be a helpful tool in combination with epidemiological data, in relation to outbreak tracking. However detailed information on farm to farm transmission requires full genome sequencing
Biscale Chaos in Propagating Fronts
The propagating chemical fronts found in cubic autocatalytic
reaction-diffusion processes are studied. Simulations of the reaction-diffusion
equation near to and far from the onset of the front instability are performed
and the structure and dynamics of chemical fronts are studied. Qualitatively
different front dynamics are observed in these two regimes. Close to onset the
front dynamics can be characterized by a single length scale and described by
the Kuramoto-Sivashinsky equation. Far from onset the front dynamics exhibits
two characteristic lengths and cannot be modeled by this amplitude equation. An
amplitude equation is proposed for this biscale chaos. The reduction of the
cubic autocatalysis reaction-diffusion equation to the Kuramoto-Sivashinsky
equation is explicitly carried out. The critical diffusion ratio delta, where
the planar front loses its stability to transverse perturbations, is determined
and found to be delta=2.300.Comment: Typeset using RevTeX, fig.1 and fig.4 are not available, mpeg
simulations are at
http://www.chem.utoronto.ca/staff/REK/Videos/front/front.htm
Multiple Front Propagation Into Unstable States
The dynamics of transient patterns formed by front propagation in extended
nonequilibrium systems is considered. Under certain circumstances, the state
left behind a front propagating into an unstable homogeneous state can be an
unstable periodic pattern. It is found by a numerical solution of a model of
the Fr\'eedericksz transition in nematic liquid crystals that the mechanism of
decay of such periodic unstable states is the propagation of a second front
which replaces the unstable pattern by a another unstable periodic state with
larger wavelength. The speed of this second front and the periodicity of the
new state are analytically calculated with a generalization of the marginal
stability formalism suited to the study of front propagation into periodic
unstable states. PACS: 47.20.Ky, 03.40.Kf, 47.54.+rComment: 12 page
Cerebral palsy in a total population of 4â11 year olds in southern Sweden. Prevalence and distribution according to different CP classification systems
<p>Abstract</p> <p>Background</p> <p>The aim of this study was to investigate the prevalence of cerebral palsy (CP) as well as to characterize the CP population, its participation in a secondary prevention programme (CPUP) and to validate the CPUP database.</p> <p>Methods</p> <p>The study population was born 1990â1997 and resident in SkĂ„ne/Blekinge on Jan 1<sup>st </sup>2002. Multiple sources were used. Irrespective of earlier diagnoses, neuropaediatrician and other professional medical records were evaluated for all children at the child habilitation units. The CPUP database and diagnosis registers at hospital departments were searched for children with CP or psychomotor retardation, whose records were then evaluated. To enhance early prevention, CP/probable CP was searched for also in children below four years of age born 1998â2001.</p> <p>Results</p> <p>The prevalence of CP was 2.4/1,000 (95% CI 2.1â2.6) in children 4â11 years of age born in Sweden, excluding post-neonatally acquired CP. Children born abroad had a higher prevalence of CP with more severe functional limitations. In the total population, the prevalence of CP was 2.7/1,000 (95% CI 2.4â3.0) and 48% were GMFCS-level I (the mildest limitation of gross motor function).</p> <p>One third of the children with CP, who were born or had moved into the area after a previous study in 1998, were not in the CPUP database. The subtype classification in the CPUP database was adjusted in the case of every fifth child aged 4â7 years not previously reviewed.</p> <p>Conclusion</p> <p>The prevalence of CP and the subtype distribution did not differ from that reported in other studies, although the proportion of mild CP tended to be higher.</p> <p>The availability of a second opinion about the classification of CP/CP subtypes is necessary in order to keep a CP register valid, as well as an active search for undiagnosed CP among children with other impairments.</p
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