Crisis, farming and community

In 2001, the UK was hit by Foot and Mouth Disease (FMD) precipitating one of the biggest crises ever to affect the UK farming system. The crisis unfolded as a series of information and communication problems, from government to farmers and from farmers to farmers, with consequences for action in a time of crisis, social support, and the maintenance of community. What happens to a farming community during such a crisis? When the countryside shuts down, and no one can enter or leave the farm, how can information be disseminated? As methods of dealing with the disease change rapidly, as happened in this crisis, how can information be delivered in a timely and coordinated manner? To explore these questions, data have been gathered from reports and writing about the crisis, and from interviews with Cumbrian farmers. Although we will address throughout the discussion the multiple information channels used by farmers, this paper focuses on the role of information and communication technologies (ICTs) during the crisis, notably a community networking initiative known as Pentalk. We conclude with a look at the current role of Pentalk in the farming community, and with discussion of how networks such as these can help during crises in which there are significant needs for information and communication management

Level and pattern of overstory retention shape the abundance and long-term dynamics of natural and created snags

Standing dead trees, or snags, serve myriad functions in natural forests, but are often scarce in forests managed for timber production. Variable retention (VR), the retention of live and dead trees through harvest, has been adopted globally as a less intensive form of regeneration harvest. In this study, we explore how two key elements of VR systems — level (amount) and spatial pattern of live-tree retention — affect the carryover and post-harvest dynamics of natural and artificially created snags. We present nearly two decades of data from the DEMO Study, a regional-scale experiment in VR harvests of Douglas-fir-dominated forests in the Pacific Northwest. Snag losses to harvest were greater at 15 than at 40% retention (67 vs. 47% declines in density) and greater in dispersed than in aggregated treatments (64 vs. 50% declines). Densities of hard and tall (≥5 m) snags were particularly sensitive to low-level dispersed retention, declining by 76 and 81%, respectively. Despite these losses, post-harvest densities correlated with pre-harvest densities for most snag size and decay classes. In contrast to initial harvest effects, snag densities changed minimally over the post-harvest period (years 1 to 18 or 19), with low rates of recruitment offsetting low rates of loss. Post-harvest survival of snags was greater at 15 than at 40% retention (79 vs. 69%), as were rates of decay (68 vs. 52% of hard snags transitioned to soft). However, pattern had no effect on either process. Snag recruitment did not vary with retention level or pattern at the scale of the 13-ha harvest unit, but was several-fold greater in the 1-ha aggregates (14.3–27.8 snags ha -1) than in the corresponding dispersed treatments (4.2–5.3 snags ha -1). Snag size (diameter) distributions showed greater change in dispersed than in aggregated treatments, reflecting greater loss of smaller snags and recruitment biased toward larger snags. Created snags showed uniformly high survival (97%), irrespective of treatment, but rates of decay were greater at lower retention. If a goal of VR is to sustain snag abundance and diversity through harvest, emphasis should be placed on minimizing initial losses, either by reducing the intensity of felling in areas of dispersed retention or locating forest aggregates in areas of greater initial snag density, diversity, or incipient decay

Functional relationships among songbirds, arthropods, and understory vegetation in Douglas-fir forests, western Oregon

Arthropods are important food resources for birds. Forest management activities can influence shrub-dwelling arthropods by affecting the structure and composition of understory shrub communities. Changes in abundance and species composition of arthropod communities in turn may influence the distribution and abundance of insectivorous birds. I examined relationships among bird abundance, availability of arthropod prey, and composition of understory vegetation in managed and unmanaged Douglas-fir forests in western Oregon. I sampled bird abundance, arthropod intensity in terms of abundance and biomass, and habitat structure in 13 forest stands representing a range of structural conditions. I used fecal analysis to describe the diets of five bird species that forage in the understory of conifer forests, and compared the abundance of food resources for Wilson's warblers among shrub species and silvicultural treatments. I also quantified the foraging patterns of Wilson's warbiers, MacGillivray's warblers, and orange-crowned warblers to determine which shrub species were used for foraging. Variation in deciduous shrub cover provided the best explanation of variation in the abundances of Wilson's warbler, MacGillivray's warbler, and Swainson's thrush among study sites. Stands occupied by Wilson's and MacGillivray's warblers had significantly greater cover of deciduous shrubs than unoccupied stands, and both of these species foraged extensively on these shrubs. Their association with deciduous shrubs may be related to prey abundance because tall, deciduous shrubs supported high abundances of arthropod taxa selected as prey by Wilson's warbiers, especially Lepidoptera larvae. Abundance of aerial arthropod prey also was positively correlated with deciduous shrub cover. These shrub species responded positively to partial removal of the overstory by thinning and group selection harvests. Furthermore, small gaps in the canopy of commercially thinned stands and larger gaps created by group selection harvests supported higher abundances of aerial arthropod prey than surrounding matrix forest. I conclude that understory vegetation in general, and deciduous shrubs in particular, make an important contribution to food resources for birds in conifer-dominated habitats. Management activities that promote the development and maintenance of understory vegetation can positively influence songbird diversity by maintaining habitat for shrub-associated species

Explaining the unobserved: why quantum mechanics is not only about information

A remarkable theorem by Clifton, Bub and Halvorson (2003)(CBH) characterizes quantum theory in terms of information--theoretic principles. According to Bub (2004, 2005) the philosophical significance of the theorem is that quantum theory should be regarded as a ``principle'' theory about (quantum) information rather than a ``constructive'' theory about the dynamics of quantum systems. Here we criticize Bub's principle approach arguing that if the mathematical formalism of quantum mechanics remains intact then there is no escape route from solving the measurement problem by constructive theories. We further propose a (Wigner--type) thought experiment that we argue demonstrates that quantum mechanics on the information--theoretic approach is incomplete.Comment: 34 Page

A comparison of selected parametric and imputation methods for estimating snag density and snag quality attributes

Snags (standing dead trees) are an essential structural component of forests. Because wildlife use of snags depends on size and decay stage, snag density estimation without any information about snag quality attributes is of little value for wildlife management decision makers. Little work has been done to develop models that allow multivariate estimation of snag density by snag quality class. Using climate, topography, Landsat TM data, stand age and forest type collected for 2356 forested Forest Inventory and Analysis plots in western Washington and western Oregon, we evaluated two multivariate techniques for their abilities to estimate density of snags by three decay classes. The density of live trees and snags in three decay classes (D1: recently dead, little decay; D2: decay, without top, some branches and bark missing; D3: extensive decay, missing bark and most branches) with diameter at breast height (DBH) ≥ 12.7 cm was estimated using a nonparametric random forest nearest neighbor imputation technique (RF) and a parametric two-stage model (QPORD), for which the number of trees per hectare was estimated with a Quasipoisson model in the first stage and the probability of belonging to a tree status class (live, D1, D2, D3) was estimated with an ordinal regression model in the second stage. The presence of large snags with DBH ≥ 50 cm was predicted using a logistic regression and RF imputation. Because of the more homogenous conditions on private forest lands, snag density by decay class was predicted with higher accuracies on private forest lands than on public lands, while presence of large snags was more accurately predicted on public lands, owing to the higher prevalence of large snags on public lands. RF outperformed the QPORD model in terms of percent accurate predictions, while QPORD provided smaller root mean square errors in predicting snag density by decay class. The logistic regression model achieved more accurate presence/absence classification of large snags than the RF imputation approach. Adjusting the decision threshold to account for unequal size for presence and absence classes is more straightforward for the logistic regression than for the RF imputation approach. Overall, model accuracies were poor in this study, which can be attributed to the poor predictive quality of the explanatory variables and the large range of forest types and geographic conditions observed in the data.Keywords: Snag size class, Ordinal regression, Snag density, Snag decay class, Nearest neighbor imputatio

A comparison of selected parametric and imputation methods for estimating snag density and snag quality attributes

Snags (standing dead trees) are an essential structural component of forests. Because wildlife use of snags depends on size and decay stage, snag density estimation without any information about snag quality attributes is of little value for wildlife management decision makers. Little work has been done to develop models that allow multivariate estimation of snag density by snag quality class. Using climate, topography, Landsat TM data, stand age and forest type collected for 2356 forested Forest Inventory and Analysis plots in western Washington and western Oregon, we evaluated two multivariate techniques for their abilities to estimate density of snags by three decay classes. The density of live trees and snags in three decay classes (D1: recently dead, little decay; D2: decay, without top, some branches and bark missing; D3: extensive decay, missing bark and most branches) with diameter at breast height (DBH) ≥ 12.7 cm was estimated using a nonparametric random forest nearest neighbor imputation technique (RF) and a parametric two-stage model (QPORD), for which the number of trees per hectare was estimated with a Quasipoisson model in the first stage and the probability of belonging to a tree status class (live, D1, D2, D3) was estimated with an ordinal regression model in the second stage. The presence of large snags with DBH ≥ 50 cm was predicted using a logistic regression and RF imputation. Because of the more homogenous conditions on private forest lands, snag density by decay class was predicted with higher accuracies on private forest lands than on public lands, while presence of large snags was more accurately predicted on public lands, owing to the higher prevalence of large snags on public lands. RF outperformed the QPORD model in terms of percent accurate predictions, while QPORD provided smaller root mean square errors in predicting snag density by decay class. The logistic regression model achieved more accurate presence/absence classification of large snags than the RF imputation approach. Adjusting the decision threshold to account for unequal size for presence and absence classes is more straightforward for the logistic regression than for the RF imputation approach. Overall, model accuracies were poor in this study, which can be attributed to the poor predictive quality of the explanatory variables and the large range of forest types and geographic conditions observed in the data.This is the publisher’s final pdf. The published article is copyrighted by Elsevier and can be found at: http://www.journals.elsevier.com/forest-ecology-and-managemen

Use of created snags by cavity-nesting birds across 25 years

Snags are important habitat features for many forest-dwelling species, so reductions in the number of snags can lead to the loss of biodiversity in forest ecosystems. Intentional snag creation is often used in managed forests to mitigate the long-term declines of naturally created snags, yet information regarding the use of snags by wildlife across long timescales (>20 yr) is lacking and prevents a complete understanding of how the value of created snags change through time. We used a long-term experiment to assess how harvest treatment (i.e., small-patch group selection, 2-story, and clearcut) and snag configuration (i.e., scattered and clustered) influenced nesting in and foraging on 25-27-year-old Douglas-fir (Pseudotsuga menziesii) snags by cavity-nesting birds. In addition, we compared our contemporary measures of bird use to estimates obtained from historical surveys conducted on the same group of snags to quantify how bird use changed over time. Despite observing created snags for >750hours across 2 consecutive breeding seasons, we found limited evidence of nesting activity. Only 11% of created snags were used for breeding, with nesting attempts by 4 bird species (n=36 nests); however, we detected 12 cavity-nesting species present on our study sites. Furthermore, nearly all nests (94%) belonged to the chestnut-backed chickadee (Poecile rufescens), a weak cavity-excavating species that requires well-decayed wood for creating nest cavities. Our surveys also recorded few observations of birds using created snags as foraging substrates, with only 1 foraging event recorded for every 20hours of observation. We detected 82% fewer nests and recorded 7% fewer foraging observations during contemporary field work despite spending >7.5 times more effort observing created snags relative to historical surveys. We conclude that 25-27-year-old created Douglas-fir snags provided limited opportunities for nesting and foraging by most cavity-nesting birds, and that the period of greatest use by this group occurred within 5-15 years of creation. (c) 2018 The Wildlife Society. We used a long-term experiment to assess how harvest type and snag configuration influenced nesting in and foraging on 25-27-year-old Douglas-fir snags by cavity-nesting birds. Despite observing these snags for >750 hours across 2 consecutive breeding seasons, we conclude that they provided limited opportunities for nesting and foraging by most cavity-nesting birds

Burkholderia BcpA mediates biofilm formation independently of interbacterial contact dependent growth inhibition

Contact dependent growth inhibition (CDI) is a phenomenon in which Gram-negative bacteria use the toxic C-terminus of a large surface-exposed exoprotein to inhibit the growth of susceptible bacteria upon cell-cell contact. Little is known about when and where bacteria express the genes encoding CDI system proteins and how these systems contribute to the survival of bacteria in their natural niche. Here we establish that, in addition to mediating interbacterial competition, the Burkholderia thailandensis CDI system exoprotein BcpA is required for biofilm development. We also provide evidence that the catalytic activity of BcpA and extracellular DNA are required for the characteristic biofilm pillars to form. We show using a bcpA-gfp fusion that within the biofilm, expression of the CDI system-encoding genes is below the limit of detection for the majority of bacteria and only a subset of cells express the genes strongly at any given time. Analysis of a strain constitutively expressing the genes indicates that native expression is critical for biofilm architecture. Although CDI systems have so far only been demonstrated to be involved in interbacterial competition, constitutive production of the system’s immunity protein in the entire bacterial population did not alter biofilm formation, indicating a CDI-independent role for BcpA in this process. We propose, therefore, that bacteria may use CDI proteins in cooperative behaviors, like building biofilm communities, and in competitive behaviors that prevent non-self bacteria from entering the community