PAH Degradation by Two Native Egyptian Strains Flavobacterium Sp. And Pseudomonas putida

Abstract: PAH make serious problems in Egypt and all over the world. PAHs present in soil may exhibit a toxic activity towards different plants, microorganisms and invertebrates. Microorganisms, being in intimate contact with the soil environment, are considered to be the best indicators of soil pollution. In addition, biodegradation is one of the most key processes for PAHs to disappear from the environment. So, in Egypt we try to overcome this problem by searching on microorganisms able to degrade and eliminate this hazard compounds from our environment. Solid and liquid samples were collected from Kafer El Zyat City, Gharbia Governorate, Egypt. Bacterial isolation was carried out using enriched media technique. More than 78 isolates were obtained and capability of degradation also was examined using modified real time method. Finger printing for all the isolates using REP-PCR was carried out. The REP_PCR was grouped the isolates into 10 groups, only two isolates were showed high degradation talent and specificity for the two polyaromatic hydrocarbons (naphthalene or phenol). Moreover, the two isolates were subjected to molecular identification using 16SrRNA gene. Actually, The DNA sequence identified them into Pseudomonas putida (DQ399838) and Flavobacterium sp. (DQ398100). Strain P. putida showed degradation rate for naphthalene reached to 50% after 20 hours from incubation but the same result was obtained by Flavobacterium sp after only 17 hours from inoculation time. Whenever, we need to increase the amount of the soil degradation rate by adding these mutant bacteria to the soil and amendment of these bacteria, which will help in bioremediation technology

Femtosecond Pulsed Laser Deposition of Indium on Si (100)

Deposition of indium on Si(100) substrates is performed under ultrahigh vacuum with an amplified Ti:sapphire laser (130 fs) at wavelength of 800 nm and laser fluence of 0.5 J/cm2. Indium films are grown at room temperature and at higher substrate temperatures with a deposition rate of similar to 0.05 ML/pulse. Reflection high-energy electron diffraction (RHEED) is used during the deposition to study the growth dynamics and the surface structure of the grown films. The morphology of the grown films is examined by ex situ atomic force microscopy (AFM). At room temperature indium is found to form epitaxial two-dimensional layers on the Si(100)-(2x1) surface followed by three-dimensional islands. AFM images show different indium island morphologies such as hexagonal and elongated shapes. At substrate temperatures of 400-420 °C, RHEED intensity oscillations are observed during film growth indicating that the indium film grows in the layer-by-layer mode

Activation Energy of Surface Diffusion and Terrace Width Dynamics During the Growth of in (4×3) on Si (100) - (2×1) by Femtosecond Pulsed Laser Deposition

The nucleation and growth of indium on a vicinal Si (100) - (2×1) surface at high temperature by femtosecond pulsed laser deposition was investigated by in situ reflection high energy electron diffraction (RHEED). RHEED intensity relaxation was observed for the first ∼2 ML during the growth of In (4×3) by step flow. From the temperature dependence of the rate of relaxation, an activation energy of 1.4±0.2 eV of surface diffusion was determined. The results indicate that indium small clusters diffused to terrace step edges with a diffusion frequency constant of (1.0±0.1) × 1011 s-1. The RHEED specular beam split peak spacing, which is characteristic of a vicinal surface, was analyzed with the growth temperature to obtain the average terrace width. Gradual reduction in the terrace width during growth of In (4×3) was observed with In coverage and is attributed to the detachment of In atoms from terrace edges. At a substrate temperature of 405 °C, the average terrace width decreased from 61±10 Å, which corresponds to the vicinal Si(100) surface, to an equilibrium value of 45±7 Å after deposition of ∼23 ML. Further In coverage showed a transition of the RHEED pattern from (4×3) to (1×1) and the growth of rounded In islands (average height of ∼1 nm and width of ∼25 nm), as examined by ex situ atomic force microscopy. © 2008 American Institute of Physics. [DOI: 10.1063/1.2909923

Atomic Hydrogen Cleaning of InP(100): Electron Yield and Surface Morphology of Negative Electron Affinity Activated Surfaces

Atomic hydrogen cleaning of the InP(100) surface has been investigated using quantitative reflection high-energy electron diffraction. The quantum efficiency of the surface when activated to negative electron affinity was correlated with surface morphology. The electron diffraction patterns showed that hydrogen cleaning is effective in removing surface contaminants, leaving a clean, ordered, and (2×4)-reconstructed surface. After activation to negative electron affinity, a quantum efficiency of ∼6% was produced in response to photoactivation at 632 nm. Secondary electron emission from the hydrogen-cleaned InP(100)-(2×4) surface was measured and correlated to the quantum efficiency. The morphology of the vicinal InP(100) surface was investigated using electron diffraction. The average terrace width and adatom-vacancy density were measured from the (00) specular beam at the out-of-phase condition. With hydrogen cleaning time, there was some reduction in the average terrace width. The surface quality was improved with hydrogen cleaning, as indicated by the increased (00) spot intensity-to-background ratio at the out-of-phase condition, and improved quantum efficiency after activation to negative electron affinity. © 2002 American Institute of Physics. [DOI: 10.1063/1.1429796

Identification, phylogenetic analysis and expression profile of an anionic insect defensin gene, with antibacterial activity, from bacterial-challenged cotton leafworm, Spodoptera littoralis

<p>Abstract</p> <p>Background</p> <p>Defensins are a well known family of cationic antibacterial peptides (AMPs) isolated from fungi, plants, insects, mussels, birds, and various mammals. They are predominantly active against gram (+) bacteria, and a few of them are also active against gram (-) bacteria and fungi. All insect defensins belonging to the invertebrate class have a consensus motif, C-X_5-16-C-X₃-C-X_9-10-C-X_4-7-CX₁-C. Only seven AMPs have already been found in different lepidopteran species. No report was published on the isolation of defensin from the Egyptian cotton leafworm, <it>Spodoptera littoralis</it>.</p> <p>Results</p> <p>An anionic defensin, termed <it>Spli</it>Def, was isolated from the haemolymph of the cotton leafworm, <it>S. littoralis</it>, after bacterial challenge using differential display technique. Based on sequence analyses of the data, specific primers for full length and mature peptide of defensin were designed and successfully amplified 471 and 150 bp amplicons. The integration of the results revealed that the 471 bp-PCR product has one open reading frame (<it>orf</it>) of 303 bp long, including both start codon (AUG) and stop codon (UGA). The deduced peptide consists of a 23-residues signal peptide, a 27-residues propeptide and a 50-residues mature peptide with the conserved six-cysteine motif of insect defensins. Both haemolymph and expressed protein exhibited antibacterial activities comparable to positive control. The RT-qPCR indicated that it was more than 41-folds up-regulated at 48 h p.i.</p> <p>Conclusion</p> <p>Our results highlight an important immune role of the defensin gene in <it>Spodoptera littoralis </it>by cooperating with other AMPs to control bacterial infection.</p

Atomic Hydrogen Cleaning of InP(100) for Preparation of a Negative Electron Affinity Photocathode

Atomic hydrogen cleaning is used to clean InP(100) negative electron affinity photocathodes. Reflection high-energy electron diffraction patterns of reconstructed, phosphorus-stabilized, InP(100) surfaces are obtained after cleaning at ∼400 °C. These surfaces produce high quantum efficiency photocathodes (∼8.5%), in response to 632.8 nm light. Without atomic hydrogen cleaning, activation of InP to negative electron affinity requires heating to ∼530 °C. At this high temperature, phosphorus evaporates preferentially and a rough surface is obtained. These surfaces produce low quantum efficiency photocathodes (∼0.1%). The use of reflection high-energy electron diffraction to measure the thickness of the deposited cesium layer during activation by correlating diffraction intensity with photoemission is demonstrated. © 1998 American Institute of Physics

Interference Effects of Salinity on Growth and Some Metabolic Activities of Two Chlorella Species

The unicellular green algae Chlorella minutissima and Chlorella oocystoides were isolated from different regions in Upper Egypt. The effect of different concentrations of salinity (100, 250 and 500 mM NaCl) on growth parameters (optical density, dry weight, and total photosynthetic pigments) and primary products (total carbohydrates, total proteins, and lipids contents) were measured after 7 days. The growth parameters, and the primary products of Chlorella minutissima and Chlorella oocystoides were significantly increased at lower and moderate concentrations (100 and 250 mM NaCl). Under higher concentration 500 mM of NaCl, the growth parameters, and the primary products (total carbohydrates, and total proteins) were significantly decreased. However, the lipid contents were markedly increased.Keywords: Chlorella minutissima, Chlorella oocystoides, cell growth, total carbohydrates, total proteins and lipid contents

Preventive effect of the flavonoid, quercetin, on hepatic cancer in rats via oxidant/antioxidant activity: molecular and histological evidences

<p>Abstract</p> <p>Background</p> <p>The incidence of hepatocellular carcinoma is increasing in many countries. The estimated number of new cases annually is over 500,000, and the yearly incidence comprises between 2.5 and 7% of patients with liver cirrhosis. The incidence varies between different geographic areas, being higher in developing areas; males are predominantly affected, with a 2:3 male/female ratio</p> <p>Methods</p> <p>Experiments were designed to examine the effect of <it>N</it>-Nitrosodiethylamine (NDEA) as cancer-inducer compound and to confirm the preventive effect of the flavonoid quercetin on hepatocellular carcinoma in rats. Briefly, thirty six male albino rats of Wistar strain were divided into 3 groups: the 1^stgroup was administered NDEA alone (NDEA-treated), the 2^ndgroup was treated simultaneously with NDEA and quercetin (NDEA+Q) and the 3^rdgroup was used as control (CON). Randomly amplified polymorphic DNA polymerase chain reaction (RAPD-PCR) as well as <it>p53</it>-specifi PCR assays were employed to determine genomic difference between treated, and control animals. Histological confirmation as well as oxidant/antioxidant status of the liver tissue was done.</p> <p>Results</p> <p>RAPD analysis of liver samples generated 8 monomorphic bands and 22 polymorphic bands in a total of 30-banded RAPD patterns. Cluster analysis and statistical analyses of RAPD data resulted in grouping control and NDEA+Q samples in the same group with 80% similarity cut-off value. NDEA-treated samples were clustered in a separate group. Specific PCR assay for polymorphism of <it>P</it>⁵³gene revealed a uniform pattern of allele separation in both control and NDEA+Q samples. Quercetin anticancer effect was exhibited in significant decrease of oxidative stress and significant decrease of antioxidant activity. Histopathological studies showed normal liver histology of the NDEA+Q samples. Meanwhile, several cancer-induced features were clearly observable in NDEA-treated samples.</p> <p>Conclusion</p> <p>This paper demonstrated that preventive effect of quercetin on hepatocarcinoma in rats by RAPD-PCR, tracing the effect on <it>p53 </it>gene and by histopathological evidence. Hereby, it was proved that quercetin exerted its preventive effect via decreased oxidative stress and decreased antioxidant activity.</p

Chicory abrogates oxidative stress, inflammation and caspase-dependent apoptosis in acute hepatic injury model induced by acetaminophen in rats

In this study the protective effect of chicory leaves hydroalcoholic extract (CIE) against acute liver injury induced by a single dose of acetaminophen (700 mg/kg, i.p.) was investigated in rats. The CIE and silymarin treatment (standard reference) were given in a dose of (100 mg/kg, p.o.) for 3 days before and at 1 and 12 h following acetaminophen administration. Treatment with CIE significantly reduced the levels of serum ALT, AST, alkaline phosphatase, bilirubin, total cholesterol, triglycerides, urea, creatinine, TNF-α and hepatic contents of malondialdehyde (MDA), nitric oxide, caspase-3 and hydroxyproline, with significant increases in serum total protein, albumin, HDL- cholesterol and hepatic activities of reduced glutathione (GSH), superoxide dismutase (SOD) and catalase (CAT) as compared with the acetaminophen group. The histopathological alterations mediated by acetaminophen were ameliorated by CIE. It was concluded that CIE protects rat liver against acetaminophen hepatotoxicity, most probably through abrogation of oxidative stress, inflammation and caspase-3 dependent apoptosis

Antifungal potential and defense gene induction in maize against Rhizoctonia root rot by seed extract of Ammi visnaga (L.) Lam.

Methanol extracts from five medicinal plants (Eucalyptus tereticornis Sm., Ammi visnaga (L.) Lam., Azadirachta indica A. Juss., Rheum Palmatum L., and Adansonia digitata L.) were assessed in vitro for antifungal activity against Rhizoctonia solani Kühn, the causal agent of Rhizoctonia root rot of maize. All tested extracts showed antifungal activity with varied extents. Ammi visnaga (khella) extract showed the greatest activity compared with the untreated experimental controls. Observations using transmission electron microscopy showed ultrastructural changes in hyphal cells as a response to exposure to khella extract. Gas chromatography-mass spectrometric analysis of khella extract showed the presence of 69 compounds. The antifungal properties of the extracts were mainly attributed to their content of coumarins and fatty acids. In the greenhouse experiment, treatment of maize plants with khella extract at 15% gave the least incidence of Rhizoctonia root rot. Results of DD-PCR showed up- and down- regulations of some genes in maize as response to the treatment with khela extract. Identification of the randomly selected genes from DD-PCR revealed that they were defense-related, as S-domain class receptor-like kinase 3 and glutathione-S-transferase1. Real-time PCR showed induction in the gene expression of the pathogenesis-related protein chitinases (2.36 fold) and thaumatin-like proteins (8.99 fold) by treatment with khella extract at 15%, which was greater expression than detected at 10 and 20%. This indicates triggering effects from the extract on the maize immune system against the R. solani infection in a concentration-dependent manner. The efficient, low-cost and eco-friendly characteristics of khella extract indicate that it could be used for the control of Rhizoctonia root rot of maize