The database BIOSCAT: a tool for structure research by scattering and hydrodynamic methods

The crystal structures of a large number of proteins and nucleic acids are known and the corresponding sets of coordinates are stored in the Brookhaven Protein Data Bank. For structure investigations of biological macromolecules in solution, scattering and hydrodynamical methods are powerful biophysical tools when starting the data interpretation on the basis of the crystal structure of the molecules. The database BIOSCAT covers the main structural parameters estimable by X-ray scattering, translation and rotation diffusion methods and the X-ray scattering intensities and low- and high-resolution real-space electron distance distribution functions of 70 biological macromolecules and of oligonucleotides in standard conformation. The parameters and the scattered intensities are calculated from the atomic coordinates using the improved cube method and the real-space functions are estimated via a termination-error-reduced Fourier sine transformation. The database access is organized by the program PASSDB, which can generally be used for 'readable' databases. A simple query language allows enquiries into the database without knowledge of a programming language. The program CONVSQL converts the database into normalized relations that can be handled by structured query languages (SQLs)

Characterization of A Novel Avalanche Photodiode for Single Photon Detection in VIS-NIR Range

In this work we investigate operation in the Geiger mode of the new single photon avalanche photo diode (SPAD) SAP500 manufactured by Laser Components. This SPAD is sensitive in the range 400-1000nm and has a conventional reach-through structure which ensures good quantum efficiency at the long end of the spectrum. By use of passive and active quenching schemes we investigate detection efficiency, timing jitter, dark counts, afterpulsing, gain and other important parameters and compare them to the "standard" low noise SPAD C30902SH from Perkin Elmer. We conclude that SAP500 offers better combination of detection efficiency, low noise and timing precision

Practical Quantum Key Distribution with Polarization-Entangled Photons

We present an entangled-state quantum cryptography system that operated for the first time in a real world application scenario. The full key generation protocol was performed in real time between two distributed embedded hardware devices, which were connected by 1.45 km of optical fiber, installed for this experiment in the Vienna sewage system. The generated quantum key was immediately handed over and used by a secure communication application.Comment: 5 pages, 3 figure