Setting the stage for the machine intelligence era in marine science

Machine learning, a subfield of artificial intelligence, offers various methods that can be applied in marine science. It supports data-driven learning, which can result in automated decision making of de novo data. It has significant advantages compared with manual analyses that are labour intensive and require considerable time. Machine learning approaches have great potential to improve the quality and extent of marine research by identifying latent patterns and hidden trends, particularly in large datasets that are intractable using other approaches. New sensor technology supports collection of large amounts of data from the marine environment. The rapidly developing machine learning subfield known as deep learning-which applies algorithms (artificial neural networks) inspired by the structure and function of the brain-is able to solve very complex problems by processing big datasets in a short time, sometimes achieving better performance than human experts. Given the opportunities that machine learning can provide, its integration into marine science and marine resource management is inevitable. The purpose of this themed set of articles is to provide as wide a selection as possible of case studies that demonstrate the applications, utility, and promise of machine learning in marine science. We also provide a forward-look by envisioning a marine science of the future into which machine learning has been fully incorporated

Chemical Defense of the Eastern Newt (Notophthalmus viridescens): Variation in Efficiency against Different Consumers and in Different Habitats

Amphibian secondary metabolites are well known chemically, but their ecological functions are poorly understood—even for well-studied species. For example, the eastern newt (Notophthalmus viridescens) is a well known secretor of tetrodotoxin (TTX), with this compound hypothesized to facilitate this salamander's coexistence with a variety of aquatic consumers across the eastern United States. However, this assumption of chemical defense is primarily based on observational data with low replication against only a few predator types. Therefore, we tested the hypothesis that N. viridescens is chemically defended against co-occurring fishes, invertebrates, and amphibian generalist predators and that this defense confers high survivorship when newts are transplanted into both fish-containing and fishless habitats. We found that adult eastern newts were unpalatable to predatory fishes (Micropterus salmoides, Lepomis macrochirus) and a crayfish (Procambarus clarkii), but were readily consumed by bullfrogs (Lithobates catesbeianus). The eggs and neonate larvae were also unpalatable to fish (L. macrochirus). Bioassay-guided fractionation confirmed that deterrence is chemical and that ecologically relevant concentrations of TTX would deter feeding. Despite predatory fishes rejecting eastern newts in laboratory assays, field experiments demonstrated that tethered newts suffered high rates of predation in fish-containing ponds. We suggest that this may be due to predation by amphibians (frogs) and reptiles (turtles) that co-occur with fishes rather than from fishes directly. Fishes suppress invertebrate consumers that prey on bullfrog larvae, leading to higher bullfrog densities in fish containing ponds and thus considerable consumption of newts due to bullfrog tolerance of newt chemical defenses. Amphibian chemical defenses, and consumer responses to them, may be more complex and indirect than previously appreciated

The Roles of Dimensionality, Canopies and Complexity in Ecosystem Monitoring

Canopies are common among autotrophs, increasing their access to light and thereby increasing competitive abilities. If viewed from above canopies may conceal objects beneath them creating a ‘canopy effect’. Due to complexities in collecting 3-dimensional data, most ecosystem monitoring programmes reduce dimensionality when sampling, resorting to planar views. The resultant ‘canopy effects’ may bias data interpretation, particularly following disturbances. Canopy effects are especially relevant on coral reefs where coral cover is often used to evaluate and communicate ecosystem health. We show that canopies hide benthic components including massive corals and algal turfs, and as planar views are almost ubiquitously used to monitor disturbances, the loss of vulnerable canopy-forming corals may bias findings by presenting pre-existing benthic components as an altered system. Our reliance on planar views in monitoring ecosystems, especially coral cover on reefs, needs to be reassessed if we are to better understand the ecological consequences of ever more frequent disturbances

Advancing the link between ocean connectivity, ecological function and management challenges

“Ocean connectivity” is a dynamic and rapidly evolving field of research in marine science, partly because there is an increasing demand for information on connectivity that informs effective assessment and management of marine resources. Achieving this will require a better alignment between ocean connectivity tools and developments and the needs and challenges of assessments and conservation. For these reasons, the ICES Journal of Marine Science solicited contributions to the article theme set (TS), “Beyond ocean connectivity.” We briefly summarize the nine articles that appear herein, grouping them into four general topics: methodological advances, population dynamics and assessment implications of connectivity, spatial and management implications, and connectivity in ecosystem processes. We also discuss the challenges facing ocean connectivity research if it is to effectively support advancing fisheries assessment frameworks and integrated ecosystem approaches. We hope that the contributions included in this TS serve to convince managers and fisheries scientists of the need to incorporate results from research on connectivity

Articulatory Tradeoffs Reduce Acoustic Variability During American English /r/ Production

Acoustic and articulatory recordings reveal that speakers utilize systematic articulatory tradeoffs to maintain acoustic stability when producing the phoneme /r/. Distinct articulator configurations used to produce /r/ in various phonetic contexts show systematic tradeoffs between the cross-sectional areas of different vocal tract sections. Analysis of acoustic and articulatory variabilities reveals that these tradeoffs act to reduce acoustic variability, thus allowing large contextual variations in vocal tract shape; these contextual variations in turn apparently reduce the amount of articulatory movement required. These findings contrast with the widely held view that speaking involves a canonical vocal tract shape target for each phoneme.National Institute on Deafness and Other Communication Disorders (1R29-DC02852-02, 5R01-DC01925-04, 1R03-C2576-0l); National Science Foundation (IRI-9310518

Debating the effectiveness of marine protected areas

Increasing the size and number of marine protected areas (MPAs) is widely seen as a way to meet ambitious biodiversity and sustainable development goals. Yet, debate still exists on the effectiveness of MPAs in achieving ecological and societal objectives. Although the literature provides significant evidence of the ecological effects of MPAs within their boundaries, much remains to be learned about the ecological and social effects of MPAs on regional and seascape scales. Key to improving the effectiveness of MPAs, and ensuring that they achieve desired outcomes, will be better monitoring that includes ecological and social data collected inside and outside of MPAs. This can lead to more conclusive evidence about what is working, what is not, and why. Eight authors were asked to write about their experiences with MPA effectiveness. The authors were instructed to clearly define “effectiveness” and discuss the degree to which they felt MPAs had achieved or failed to be effective. Essays were exchanged among authors and each was invited to write a shorter “counterpoint.” The exercise shows that, while experiences are diverse, many authors found common ground regarding the role of MPAs in achieving conservation targets. This exchange of perspectives is intended to promote reflection, analysis, and dialogue as a means for improving MPA design, assessment, and integration with other conservation tools

Primakoff effect in eta-photoproduction off protons

We analyse data on forward eta-meson photoproduction off a proton target and extract the eta to gamma gamma decay width utilizing the Primakoff effect. The hadronic amplitude that enters into our analysis is strongly constrained because it is fixed from a global fit to available gamma p to p eta data for differential cross sections and polarizations. We compare our results with present information on the two-photon eta-decay from the literature. We provide predictions for future PrimEx experiments at Jefferson Laboratory in order to motivate further studies.Comment: 5 pages, 6 figures, gamma-gamma*-eta form factor included, version to appear in Eur. Phys. J. A

Electron-lattice interaction and its impact on high Tc superconductivity

In this Colloquium, the main features of the electron-lattice interaction are discussed and high values of the critical temperature up to room temperature could be provided. While the issue of the mechanism of superconductivity in the high Tc cuprates continues to be controversial, one can state that there have been many experimental results demonstrating that the lattice makes a strong impact on the pairing of electrons. The polaronic nature of the carriers is also a manifestation of strong electron-lattice interaction. One can propose an experiment that allows an unambiguous determination of the intermediate boson (phonon, magnon, exciton, etc.) which provides the pairing. The electron-lattice interaction increases for nanosystems, and this is due to an effective increase in the density of states

The decay pi0 to gamma gamma to next to leading order in Chiral Perturbation Theory

The two photon decay width of the neutral pion is analyzed within the combined framework of Chiral Perturbation Theory and the 1/Nc expansion up to order p^6 and p^4 times 1/Nc in the decay amplitude. The eta' is explicitly included in the analysis. It is found that the decay width is enhanced by about 4.5% due to the isospin-breaking induced mixing of the pure U(3) states. This effect, which is of leading order in the low energy expansion, is shown to persist nearly unchanged at next to leading order. The chief prediction for the width with its estimated uncertainty is 8.10+-0.08 eV. This prediction at the 1% level makes the upcomming precision measurement of the decay width even more urgent. Observations on the eta and eta' can also be made, especially about their mixing, which is shown to be significantly affected by next to leading order corrections.Comment: 21 pages, two figure