PCR inhibition in stool samples in relation to age of infants

Background: PCR is rapidly replacing traditional methods in diagnostic virus laboratories. PCR inhibitors,which are often present in clinical samples, may lead to false negative test results.Objectives: The aim was to study the presence of PCR inhibitors in stool samples collected from 3- to24-month old children.Study design: Total RNA fraction extracted from stool samples was spiked with a standardized amount ofSemliki Forest Virus RNA and amplified using specific PCR primers. The presence of PCR inhibitors wasdetected by a decrease in amplification rate compared to spiked water samples. Inhibition in differentage groups and dietary origin of PCR inhibitors were analyzed by comparing the samples taken duringexclusive and non-exclusive breastfeeding periods. The inactivation of PCR inhibitors was also assessed.Results: Complete inhibition was seen in 12% (13/108) and partial inhibition in 19% (21/108) of the samples.Inhibition was seen in none of the stool samples (0/31) taken from infants younger than 6 monthscompared to 17% of samples (13/77) taken from6 to 24 months old infants (p more common in younger age group. Addition of bovine serum albumin (BSA) into the reaction mixtureseliminated the effect of inhibitors leading to all samples being positive.Conclusions: PCR inhibitors are frequent in stool samples. They may originate from dietary componentsand can lead to false negative PCR results. The addition of BSA to the cDNA and PCR reactions proved tobe an easy and effective method for eliminating the inhibitory effect of these compounds

Impact of month of birth on the development of autoimmune thyroid disease in the United Kingdom and Europe

CONTEXT: Viral/bacterial infection is proposed as a trigger for the autoimmune thyroid diseases (AITD): Graves' disease (GD) and Hashimoto's thyroiditis (HT). Previous studies in European Caucasian AITD subjects found higher birth rates in the autumn/winter, suggesting those born in the autumn/winter experience increased viral/bacterial exposure after birth, impacting upon immune system development and predisposing to AITD later in life. OBJECTIVE: Month of birth effects were investigated in three independent European Caucasian AITD datasets. DESIGN: Variation in GD and HT onset was compared across months and seasons, with fluctuations across all 12 months analyzed using a Walter-Elwood test. SETTING: The study was conducted at a research laboratory. PATIENTS: National UK Caucasian AITD Case Control Collection (2746 GD and 502 HT compared with 1 423 716 UK births), National UK Caucasian GD Family Collection (239 GD and 227 unaffected siblings), and OXAGEN AITD Caucasian Family Collection (885 GD, 717 HT, and 794 unaffected siblings of European Caucasian decent). MAIN OUTCOME MEASURES: Case-control and family-based association studies were measured. RESULTS: No consistent month of birth effects were detected in GD females or males across all three collections. In HT females from the OXAGEN AITD Caucasian Family Collection, slightly higher birth rates were detected in autumn (Walter's test statistic = 7.47, P = .024) however, this was not seen in the HT females from the case-control cohort. CONCLUSION: Our results suggest in UK/Northern European Caucasian GD subjects, month of birth does not impact on AITD development. Although some month of birth effects for HT females in one collection cannot be excluded, only further work in larger European Caucasian AITD collections can confirm these effects

Estimation of aerosol particle number distributions with Kalman Filtering – Part 1: Theory, general aspects and statistical validity

Aerosol characteristics can be measured with different instruments providing observations that are not trivially inter-comparable. Extended Kalman Filter (EKF) is introduced here as a method to estimate aerosol particle number size distributions from multiple simultaneous observations. The focus here in Part 1 of the work was on general aspects of EKF in the context of Differential Mobility Particle Sizer (DMPS) measurements. Additional instruments and their implementations are discussed in Part 2 of the work. University of Helsinki Multi-component Aerosol model (UHMA) is used to propagate the size distribution in time. At each observation time (10 min apart), the time evolved state is updated with the raw particle mobility distributions, measured with two DMPS systems. EKF approach was validated by calculating the bias and the standard deviation for the estimated size distributions with respect to the raw measurements. These were compared to corresponding bias and standard deviation values for particle number size distributions obtained from raw measurements by a inversion of the instrument kernel matrix method. Despite the assumptions made in the EKF implementation, EKF was found to be more accurate than the inversion of the instrument kernel matrix in terms of bias, and compatible in terms of standard deviation. Potential further improvements of the EKF implementation are discussed

Hold-time fatigue crack growth of Allvac 718Plus

The hold-time fatigue behaviour of Allvac 718Plus was investigated both in the as-heat treated condition and after long-time exposure at temperature close to the maximum operating limit. At temperatures above 450\ub0C the introduction of 90 s hold-time at maximum load significantly increased the fatigue crack growth rate. Both conditions showed purely cycle dependent behavior at 450\ub0C and close to purely time dependent behavior at 700\ub0C. At 600\ub0C intermediate behavior was observed. The long-time exposure had little effect on the cyclic (0.5 Hz) crack growth rates, but the resistance to crack growth with 90 s hold-time decreased. No microstructural effects of long-time exposure (700\ub0C/140 h + 675\ub0C/460 h) could be observed by SEM, but there were indications that the hardness of the material increases somewhat after exposure

Hold-time fatigue crack growth of Allvac 718Plus

The hold-time fatigue behaviour of Allvac 718Plus was investigated both in the as-heat treated condition and after long-time exposure at temperature close to the maximum operating limit. At temperatures above 450\ub0C the introduction of 90 s hold-time at maximum load significantly increased the fatigue crack growth rate. Both conditions showed purely cycle dependent behavior at 450\ub0C and close to purely time dependent behavior at 700\ub0C. At 600\ub0C intermediate behavior was observed. The long-time exposure had little effect on the cyclic (0.5 Hz) crack growth rates, but the resistance to crack growth with 90 s hold-time decreased. No microstructural effects of long-time exposure (700\ub0C/140 h + 675\ub0C/460 h) could be observed by SEM, but there were indications that the hardness of the material increases somewhat after exposure