Is PCBs concentration variability between and within freshwater fish species explained by their contamination pathways?

Many chemical, physiological, and trophic factors are known to affect ioaccumulation of polychlorinated biphenyls (PCBs) in biota. Understanding the primary factors affecting fish contamination is critical for predicting and assessing risks to upper-trophic level consumers, including humans. Here we identify PCB contamination pathways that could explain within- and between-species variability in fish concentration levels. Three freshwater river fish species (barbel, chub and bream) were sampled at three sites along the Rhone River (France) where fish consumption is partially prohibited because of PCB levels exceeding the European health-based benchmark. The trophic position was assessed using an innovative approach based on stable isotope analyses and Bayesian inference, which takes into account both isotope data variability and parameter uncertainty. The effect of foraging habitat on fish contamination was addressed using stable isotope mixing models. The fish trophic position and PCB concentrations were found to be unrelated while the exploitation of sediment detrital carbon as a food source appeared to be a critical factor affecting fish contamination. Fish length, PCB concentration of the sediment, and individual fish foraging habitat (exploitation of detrital versus planktonic carbon sources) explained 80% of within- and between-species variability observed in PCB concentrations. These results, obtained for species that have overlapping TPs and exploit different carbon sources, reveal that the important factor in fish PCB contamination is not only what fish consume, but also and essentially the feeding location

Variabilité à long terme des peuplements de poissons : résultats provenant de rivières françaises et ouest africaines

La variabilité à long terme de 18 peuplements de poissons a été étudiée dans des rivières françaises et ouest africaines. Les principaux résultats sont les suivants : 1) le coefficient de variation (CV) de la richesse spécifique, le CV de l'abondance totale et le CV moyen des espèces constitutives du peuplement augmentent avec la durée de l'étude; 2) selon la classification proposée par GROSSMAN et al. (1990) basée sur le CV moyen de l'abondance des espèces, tous les peuplements étudiés rentrent dans la catégorie des peuplements à fortes fluctuations interannuelles. Cependant certaines populations (les salmonidés en Bretagne par exemple) présentent une faible variabilité de leur densité; 3) dans le Rhône, les peuplements dont les populations manifestent une grande variabilité interannuelle sont ceux présentant le plus grand taux de renouvellement en espèces. Ce résultat est en accord avec l'hypothèse de HORWITZ (1978, "extermination hypothesis"). (Résumé d'auteur

Stratégies démographiques des poissons des rivières françaises : premiers résultats

International audienceThe analysis of the biological, morphological and food characteristics of 35 French species leads to distinguish two main strategies. The first one gathers 11 species with a short life span and which maximize the survival of juveniles. Within it, cold water species with a long reproduction lifetime and thermophilous species with a relatively stronger fertility can be distinguished. Their diets are essentially made of insects- plankton and insects-fishes. In the second group, no care is given to juveniles; relative fertilities are higher and inversely correlated to the number of reproduction cycles. 10 species are omnivorous with a grass-wastes tendancy, and 4 species eat strictly fishes. The canonical analysis of correspondances shows that these biological characteristics are sufficuent to understand most of the longitudinal zonation.L'analyse des caractéristiques biologiques et morpho-alimentaires de 35 espèces françaises permet de distinguer 2 stratégies principales. La première rassemble 11 espèces à faible longévité et maximisant la survie des jeunes. En son sein, on distingue des espèces d'eau froide à longue durée de vie pré-reproductrice et des espèces thermophiles à fécondité relativement plus forte. Leurs régimes alimentaires sont essentiellement du type insectivore-planctonophage et insectivore-ichtyophage. Dans le second groupe, aucun soin n'est apporté aux jeunes ; les fécondités relatives sont plus fortes et inversement corrélées avec le nombre de cycles de reproduction. 10 espèces sont des omnivores à tendance herbivore-détritivore et 4 des ichtyophages stricts. L'analyse canonique des correspondances démontre que ces caractéristiques biologiques rendent compte de l'essentiel de la zonation longitudinale

Fish Structure in Channel Networks of a Large Anabranching Floodplain: Effect of Isolation/Connection Processes

Channel networks of floodplain rivers are the main routes for water, sediment, organic matter, and aquatic organisms between main channels and lakes, playing a substantial role in floodplain dynamics. Despite their importance most investigations in large floodplain rivers focus on main channels and lentic water bodies. This research deals with fish assemblage variations in different lotic sites (scour holes and straight reaches) of one of the many channels which shape the wide anabranching floodplain of the middle reach of the Paraná River. We considered the influence of environmental factors, such as hydro-geomorphological features and water quality of the channel, connections with surrounding lentic water bodies, seasonality, and interannual flow variations. The results showed two main ecological patterns closely related to floodplain connectivity. In-channel habitat heterogeneity has low influence on fish assemblages when minor channels are connected to significant flooded areas (sampling period 2013–2016). Spatial or temporal predictions of fish structure during these stages are not easy due to the interaction of several environmental factors. However, during very low water levels (winter of 2018) most lentic areas become isolated from the nearby channel network, and floodplain fish are forced to move into the numerous scour holes of the floodplain channels where water conditions resemble those in lentic habitats. Our work highlights the importance of in-channel characteristics of floodplain river networks and their crucial role for fish conservation, particularly during very low water stages.Fil: Abrial, Elie. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto Nacional de Limnología. Universidad Nacional del Litoral. Instituto Nacional de Limnología; ArgentinaFil: Espínola, Luis Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto Nacional de Limnología. Universidad Nacional del Litoral. Instituto Nacional de Limnología; ArgentinaFil: Amsler, Mario Luis. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto Nacional de Limnología. Universidad Nacional del Litoral. Instituto Nacional de Limnología; ArgentinaFil: Rabuffetti, Ana Pia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto Nacional de Limnología. Universidad Nacional del Litoral. Instituto Nacional de Limnología; ArgentinaFil: Latosinski, Francisco Guillermo. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Departamento de Hidráulica; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe; ArgentinaFil: Szupiany, Ricardo Nicolas. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe; Argentina. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Departamento de Hidráulica; ArgentinaFil: Eurich, María Florencia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto Nacional de Limnología. Universidad Nacional del Litoral. Instituto Nacional de Limnología; ArgentinaFil: Blettler, Martin Cesar Maria. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto Nacional de Limnología. Universidad Nacional del Litoral. Instituto Nacional de Limnología; Argentin

Independent evolution of shape and motility allows evolutionary flexibility in Firmicutes bacteria

Functional morphological adaptation is an implicit assumption across many ecological studies. However, despite a few pioneering attempts to link bacterial form and function, functional morphology is largely unstudied in prokaryotes. One intriguing candidate for analysis is bacterial shape, as multiple lines of theory indicate that cell shape and motility should be strongly correlated. Here we present a large-scale use of modern phylogenetic comparative methods to explore this relationship across 325 species of the phylum Firmicutes. In contrast to clear predictions from theory, we show that cell shape and motility are not coupled, and that transitions to and from flagellar motility are common and strongly associated with lifestyle (free-living or host-associated). We find no association between shape and lifestyle, and contrary to recent evidence, no indication that shape is associated with pathogenicity. Our results suggest that the independent evolution of shape and motility in this group might allow a greater evolutionary flexibility

Genetic differentiation of European grayling (Thymallus thymallus) populations in Serbia, based on mitochondrial and nuclear DNA analyses

<p>Abstract</p> <p>Background</p> <p>The structure and diversity of grayling (<it>Thymallus thymallus</it>) populations have been well studied in most of its native habitat; however the southernmost populations of the Balkan Peninsula remain largely unexplored. The purpose of this study was to assess the genetic diversity of Serbian grayling populations, detect the impact of stocking and provide guidelines for conservation and management.</p> <p>Methods</p> <p>Eighty grayling individuals were collected from four rivers (Ibar, Lim, Drina and Rzav). The mitochondrial DNA control region (CR; 595 bp of the 3'end and 74 bp of flanking tRNA) and the ATP6 gene (630 bp fragment) were sequenced for 20 individuals (five from each locality). In addition, all individuals were genotyped with 12 microsatellite loci. The diversity and structure of the populations as well as the recent and ancient population declines were studied using specialized software.</p> <p>Results</p> <p>We detected three new haplotypes in the mtDNA CR and four haplotypes in the ATP6 gene of which three had not been described before. Previously, one CR haplotype and two ATP6 gene haplotypes had been identified as allochthonous, originating from Slovenia. Reconstruction of phylogenetic relations placed the remaining two CR haplotypes from the River Danube drainage of Serbia into a new clade, which is related to the previously described sister Slovenian clade. These two clades form a new Balkan clade. Microsatellite marker analysis showed that all four populations are genetically distinct from each other without any sign of intra-population structure, although stocking of the most diverse population (Drina River) was confirmed by mtDNA analysis. Recent and historical population declines of Serbian grayling do not differ from those of other European populations.</p> <p>Conclusions</p> <p>Our study shows that (1) the Ibar, Lim and Drina Rivers grayling populations are genetically distinct from populations outside of Serbia and thus should be managed as native populations in spite of some introgression in the Drina River population and (2) the Rzav River population is not appropriate for further stocking activities since it originates from stocked Slovenian grayling. However, the Rzav River population does not represent an immediate danger to other populations because it is physically isolated from these.</p

Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation

Bacterial biofilms are communities of bacteria that exist as aggregates that can adhere to surfaces or be free-standing. This complex, social mode of cellular organization is fundamental to the physiology of microbes and often exhibits surprising behavior. Bacterial biofilms are more than the sum of their parts: single-cell behavior has a complex relation to collective community behavior, in a manner perhaps cognate to the complex relation between atomic physics and condensed matter physics. Biofilm microbiology is a relatively young field by biology standards, but it has already attracted intense attention from physicists. Sometimes, this attention takes the form of seeing biofilms as inspiration for new physics. In this roadmap, we highlight the work of those who have taken the opposite strategy: we highlight the work of physicists and physical scientists who use physics to engage fundamental concepts in bacterial biofilm microbiology, including adhesion, sensing, motility, signaling, memory, energy flow, community formation and cooperativity. These contributions are juxtaposed with microbiologists who have made recent important discoveries on bacterial biofilms using state-of-the-art physical methods. The contributions to this roadmap exemplify how well physics and biology can be combined to achieve a new synthesis, rather than just a division of labor