Non-destructive imaging of an individual protein

The mode of action of proteins is to a large extent given by their ability to adopt different conformations. This is why imaging single biomolecules at atomic resolution is one of the ultimate goals of biophysics and structural biology. The existing protein database has emerged from X-ray crystallography, NMR or cryo-TEM investigations. However, these tools all require averaging over a large number of proteins and thus over different conformations. This of course results in the loss of structural information. Likewise it has been shown that even the emergent X-FEL technique will not get away without averaging over a large quantity of molecules. Here we report the first recordings of a protein at sub-nanometer resolution obtained from one individual ferritin by means of low-energy electron holography. One single protein could be imaged for an extended period of time without any sign of radiation damage. Since ferritin exhibits an iron core, the holographic reconstructions could also be cross-validated against TEM images of the very same molecule by imaging the iron cluster inside the molecule while the protein shell is decomposed

Many-body approach to proton emission and the role of spectroscopic factors

The process of proton emission from nuclei is studied by utilizing the two-potential approach of Gurvitz and Kalbermann in the context of the full many-body problem. A time-dependent approach is used for calculating the decay width. Starting from an initial many-body quasi-stationary state, we employ the Feshbach projection operator approach and reduce the formalism to an effective one-body problem. We show that the decay width can be expressed in terms of a one-body matrix element multiplied by a normalization factor. We demonstrate that the traditional interpretation of this normalization as the square root of a spectroscopic factor is only valid for one particular choice of projection operator. This causes no problem for the calculation of the decay width in a consistent microscopic approach, but it leads to ambiguities in the interpretation of experimental results. In particular, spectroscopic factors extracted from a comparison of the measured decay width with a calculated single-particle width may be affected.Comment: 17 pages, Revte

The geometry of a vorticity model equation

We provide rigorous evidence of the fact that the modified Constantin-Lax-Majda equation modeling vortex and quasi-geostrophic dynamics describes the geodesic flow on the subgroup of orientation-preserving diffeomorphisms fixing one point, with respect to right-invariant metric induced by the homogeneous Sobolev norm $H^{1/2}$ and show the local existence of the geodesics in the extended group of diffeomorphisms of Sobolev class $H^{k}$ with $k\ge 2$.Comment: 24 page

The curvature of semidirect product groups associated with two-component Hunter-Saxton systems

In this paper, we study two-component versions of the periodic Hunter-Saxton equation and its $\mu$-variant. Considering both equations as a geodesic flow on the semidirect product of the circle diffeomorphism group \Diff(\S) with a space of scalar functions on $\S$ we show that both equations are locally well-posed. The main result of the paper is that the sectional curvature associated with the 2HS is constant and positive and that 2$\mu$HS allows for a large subspace of positive sectional curvature. The issues of this paper are related to some of the results for 2CH and 2DP presented in [J. Escher, M. Kohlmann, and J. Lenells, J. Geom. Phys. 61 (2011), 436-452].Comment: 19 page

Right-invariant Sobolev metrics of fractional order on the diffeomorphism group of the circle

In this paper, we study the geodesic flow of a right-invariant metric induced by a general Fourier multiplier on the diffeomorphism group of the circle and on some of its homogeneous spaces. This study covers in particular right-invariant metrics induced by Sobolev norms of fractional order. We show that, under a certain condition on the symbol of the inertia operator (which is satisfied for the fractional Sobolev norm $H^{s}$ for $s \ge 1/2$), the corresponding initial value problem is well-posed in the smooth category and that the Riemannian exponential map is a smooth local diffeomorphism. Paradigmatic examples of our general setting cover, besides all traditional Euler equations induced by a local inertia operator, the Constantin-Lax-Majda equation, and the Euler-Weil-Petersson equation.Comment: 40 pages. Corrected typos and improved redactio

Necrotic tumor growth: an analytic approach

The present paper deals with a free boundary problem modeling the growth process of necrotic multi-layer tumors. We prove the existence of flat stationary solutions and determine the linearization of our model at such an equilibrium. Finally, we compute the solutions of the stationary linearized problem and comment on bifurcation.Comment: 14 pages, 3 figure

The time singular limit for a fourth-order damped wave equation for MEMS

We consider a free boundary problem modeling electrostatic microelectromechanical systems. The model consists of a fourth-order damped wave equation for the elastic plate displacement which is coupled to an elliptic equation for the electrostatic potential. We first review some recent results on existence and non-existence of steady-states as well as on local and global well-posedness of the dynamical problem, the main focus being on the possible touchdown behavior of the elastic plate. We then investigate the behavior of the solutions in the time singular limit when the ratio between inertial and damping effects tends to zero

Toward a complete theory for predicting inclusive deuteron breakup away from stability

We present an account of the current status of the theoretical treatment of inclusive $(d,p)$ reactions in the breakup-fusion formalism, pointing to some applications and making the connection with current experimental capabilities. Three independent implementations of the reaction formalism have been recently developed, making use of different numerical strategies. The codes also originally relied on two different but equivalent representations, namely the prior (Udagawa-Tamura, UT) and the post (Ichimura-Austern-Vincent, IAV) representations. The different implementations have been benchmarked, and then applied to the Ca isotopic chain. The neutron-Ca propagator is described in the Dispersive Optical Model (DOM) framework, and the interplay between elastic breakup (EB) and non-elastic breakup (NEB) is studied for three Ca isotopes at two different bombarding energies. The accuracy of the description of different reaction observables is assessed by comparing with experimental data of $(d,p)$ on $^{40,48}$Ca. We discuss the predictions of the model for the extreme case of an isotope ($^{60}$Ca) currently unavailable experimentally, though possibly available in future facilities (nominally within production reach at FRIB). We explore the use of $(d,p)$ reactions as surrogates for $(n,\gamma)$ processes, by using the formalism to describe the compound nucleus formation in a $(d,p\gamma)$ reaction as a function of excitation energy, spin, and parity. The subsequent decay is then computed within a Hauser-Feshbach formalism. Comparisons between the $(d,p\gamma)$ and $(n,\gamma)$ induced gamma decay spectra are discussed to inform efforts to infer neutron captures from $(d,p\gamma)$ reactions. Finally, we identify areas of opportunity for future developments, and discuss a possible path toward a predictive reaction theory