177 research outputs found
Live at the 55bar : complete scores package
Contains 6 scores: Intro, Culture, Mana, Alibea, That Stern look, Aphelio
Dynamic and Static Analysis and in situ Investigation of Vibro-Fundex Piles
Based on dynamic and static formulas and loading tests analysis of bearing capacity of type Vibro-Fundex driven piles is presented. The piles were embedded into noncohesive soils of various origin and degree of compaction. Using this analysis and performed investigations, the lengths of piles designed on the basis of static formulae have been corrected for safety transferring of loads into subsoil
The role of far-red spectral states in the energy regulation of phycobilisomes
The main light-harvesting pigment-protein complex of cyanobacteria and certain algae is the phycobilisome, which harvests sunlight and regulates the flow of absorbed energy to provide the photochemical reaction centres with a constant energy throughput. At least two light-driven mechanisms of excited energy quenching in phycobilisomes have been identified: the dominant mechanism in many strains of cyanobacteria depends on the orange carotenoid protein (OCP), while the second mechanism is intrinsically available to a phycobilisome and is possibly activated faster than the former. Recent single molecule spectroscopy studies have shown that far-red (FR) emission states are related to the OCP-dependent mechanism and it was proposed that the second mechanism may involve similar states. In this study, we examined the dynamics of simultaneously measured emission spectra and intensities from a large set of individual phycobilisome complexes from Synechocystis PCC 6803. Our results suggest a direct relationship between FR spectral states and thermal energy dissipating states and can be explained by a single phycobilin pigment in the phycobilisome core acting as the site of both quenching and FR emission likely due to the presence of a charge-transfer state. Our experimental method provides a means to accurately resolve the fluorescence lifetimes and spectra of the FR states, which enabled us to quantify a kinetic model that reproduces most of the experimentally determined properties of the FR states.M.G., T.P.J.K. and R.v.G. were supported by R.v.G.'s advanced investigator grant (267333, PHOTPROT) from the European Research Council and TOP grant (700.58.305) from the Foundation of Chemical Sciences part of NWO. T.P.J.K. was additionally supported by the University of Pretoria‘s Research Development Programme (A0W679). R.v.G. gratefully acknowledges his ‘Academy Professor’ grant from the Royal Netherlands Academy of Arts and Sciences (KNAW). M.G. was additionally funded by EMBO, the Claude Leon Foundation and the University of Pretoria.http://www.elsevier.com/locate/bbamem2020-04-01hj2019Physic
Charge transfer states in phycobilisomes
Phycobilisomes (PBs) absorb light and supply downstream photosynthetic processes with excitation energy in many cyanobacteria and algae. In response to a sudden increase in light intensity, excess excitation energy is photoprotectively dissipated in PBs by means of the orange carotenoid protein (OCP)-related mechanism or via a light-activated intrinsic decay channel. Recently, we have identified that both mechanisms are associated with far-red emission states. Here, we investigate the far-red states involved with the light-induced intrinsic mechanism by exploring the energy landscape and electro-optical properties of the pigments in PBs. While Stark spectroscopy showed that the far-red states in PBs exhibit a strong charge-transfer (CT) character at cryogenic temperatures, single molecule spectroscopy revealed that CT states should also be present at room temperature. Owing to the strong environmental sensitivity of CT states, the knowledge gained from this study may contribute to the design of a new generation of fluorescence markers
Flud: a hybrid crowd-algorithm approach for visualizing biological networks
Modern experiments in many disciplines generate large quantities of network
(graph) data. Researchers require aesthetic layouts of these networks that
clearly convey the domain knowledge and meaning. However, the problem remains
challenging due to multiple conflicting aesthetic criteria and complex
domain-specific constraints. In this paper, we present a strategy for
generating visualizations that can help network biologists understand the
protein interactions that underlie processes that take place in the cell.
Specifically, we have developed Flud, an online game with a purpose (GWAP) that
allows humans with no expertise to design biologically meaningful graph layouts
with the help of algorithmically generated suggestions. Further, we propose a
novel hybrid approach for graph layout wherein crowdworkers and a simulated
annealing algorithm build on each other's progress. To showcase the
effectiveness of Flud, we recruited crowd workers on Amazon Mechanical Turk to
lay out complex networks that represent signaling pathways. Our results show
that the proposed hybrid approach outperforms state-of-the-art techniques for
graphs with a large number of feedback loops. We also found that the
algorithmically generated suggestions guided the players when they are stuck
and helped them improve their score. Finally, we discuss broader implications
for mixed-initiative interactions in human computation games.Comment: This manuscript is currently under revie
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