Rain-induced changes in soil CO2 flux and microbial community composition in a tropical forest of China

Rain-induced soil CO2 pulse, a rapid excitation in soil CO2 flux after rain, is ubiquitously observed in terrestrial ecosystems, yet the underlying mechanisms in tropical forests are still not clear. We conducted a rain simulation experiment to quantify rain-induced changes in soil CO2 flux and microbial community composition in a tropical forest. Soil CO2 flux rapidly increased by ~83% after rains, accompanied by increases in both bacterial (~51%) and fungal (~58%) Phospholipid Fatty Acids (PLFA) biomass. However, soil CO2 flux and microbial community in the plots without litters showed limited response to rains. Direct releases of CO2 from litter layer only accounted for ~19% increases in soil CO2 flux, suggesting that the leaching of dissolved organic carbon (DOC) from litter layer to the topsoil is the major cause of rain-induced soil CO2 pulse. In addition, rain-induced changes in soil CO2 flux and microbial PLFA biomass decreased with increasing rain sizes, but they were positively correlated with litter-leached DOC concentration rather than total DOC flux. Our findings reveal an important role of litter-leached DOC input in regulating rain-induced soil CO2 pulses and microbial community composition, and may have significant implications for CO2 losses from tropical forest soils under future rainfall changes

Transcriptome profiling reveals the crucial biological pathways involved in cold response in Moso bamboo (Phyllostachys edulis).

Most bamboo species including Moso bamboo (Phyllostachys edulis) are tropical or subtropical plants that greatly contribute to human well-being. Low temperature is one of the main environmental factors restricting bamboo growth and geographic distribution. Our knowledge of the molecular changes during bamboo adaption to cold stress remains limited. Here, we provided a general overview of the cold-responsive transcriptional profiles in Moso bamboo by systematically analyzing its transcriptomic response under cold stress. Our results showed that low temperature induced strong morphological and biochemical alternations in Moso bamboo. To examine the global gene expression changes in response to cold, 12 libraries (non-treated, cold-treated 0.5, 1 and 24 h at -2 °C) were sequenced using an Illumina sequencing platform. Only a few differentially expressed genes (DEGs) were identified at early stage, while a large number of DEGs were identified at late stage in this study, suggesting that the majority of cold response genes in bamboo are late-responsive genes. A total of 222 transcription factors from 24 different families were differentially expressed during 24-h cold treatment, and the expressions of several well-known C-repeat/dehydration responsive element-binding factor negative regulators were significantly upregulated in response to cold, indicating the existence of special cold response networks. Our data also revealed that the expression of genes related to cell wall and the biosynthesis of fatty acids were altered in response to cold stress, indicating their potential roles in the acquisition of bamboo cold tolerance. In summary, our studies showed that both plant kingdom-conserved and species-specific cold response pathways exist in Moso bamboo, which lays the foundation for studying the regulatory mechanisms underlying bamboo cold stress response and provides useful gene resources for the construction of cold-tolerant bamboo through genetic engineering in the future

Responses of soil respiration and its temperature/moisture sensitivity to precipitation in three subtropical forests in southern China

Both long-term observation data and model simulations suggest an increasing chance of serious drought in the dry season and extreme flood in the wet season in southern China, yet little is known about how changes in precipitation pattern will affect soil respiration in the region. We conducted a field experiment to study the responses of soil respiration to precipitation manipulations – precipitation exclusion to mimic drought, double precipitation to simulate flood, and ambient precipitation as control (abbr. EP, DP and AP, respectively) – in three subtropical forests in southern China. The three forest sites include Masson pine forest (PF), coniferous and broad-leaved mixed forest (MF) and monsoon evergreen broad-leaved forest (BF). Our observations showed that altered precipitation strongly influenced soil respiration, not only through the well-known direct effects of soil moisture on plant and microbial activities, but also by modification of both moisture and temperature sensitivity of soil respiration. In the dry season, soil respiration and its temperature sensitivity, as well as fine root and soil microbial biomass, showed rising trends with precipitation increases in the three forest sites. Contrarily, the moisture sensitivity of soil respiration decreased with precipitation increases. In the wet season, different treatments showed different effects in three forest sites. The EP treatment decreased fine root biomass, soil microbial biomass, soil respiration and its temperature sensitivity, but enhanced soil moisture sensitivity in all three forest sites. The DP treatment significantly increased soil respiration, fine root and soil microbial biomass in the PF only, and no significant change was found for the soil temperature sensitivity. However, the DP treatment in the MF and BF reduced soil temperature sensitivity significantly in the wet season. Our results indicated that soil respiration would decrease in the three subtropical forests if soil moisture continues to decrease in the future. More rainfall in the wet season could have limited effect on the response of soil respiration to the rising of temperature in the BF and MF

Bryophyte diversity is related to vascular plant diversity and microhabitat under disturbance in karst caves

Plant diversity, habitat properties, and their relationships in karst caves remain poorly understood. We surveyed vascular plant and bryophyte diversities and measured the habitat characteristics in six karst caves in south China with different disturbance histories (one had been disturbed by poultry feeding, three had been disturbed by tourism, and two were undisturbed). The plant diversity differences among the six caves were analyzed using cluster analysis, and the relationships of plant diversity and microhabitat were assessed using canonical correspondence analysis. We found a total of 43 angiosperm species from 27 families, 20 lycophyte and fern species from 9 families, and 20 species of bryophytes from 13 families in the six caves. Habitat characteristics including light intensity, air relative humidity, air temperature, and soil properties varied among the caves. The plant diversity in karst caves was not rich, but the species composition was unique. The caves with high disturbance had the lowest species richness, numbers of individuals, and Shannon-Wiener diversity indices but the highest Simpson’s dominance indices. The caves with less disturbance had the highest numbers of species, numbers of individuals, and Shannon-Wiener diversity indices but the lowest Simpson’s dominance indices. The disturbed caves were often dominated by drought-tolerant, tenacious mosses (bryophytes), while the relatively undisturbed caves contained abundant liverworts (bryophytes), which were better adapted to humid environments. Plant diversity in karst caves was closely related to habitat heterogeneity, light and water status, and nutrient availability. Tourism and poultry farming were associated with the degradation of vegetation in some karst caves. Protecting and restoring bryophytes might facilitate the settlement, growth, and succession of vascular plants in karst caves. Bryophytes can be used as indicators of overall plant diversity and restoration status in karst caves

Identification of Plk4 interacting partners and establishment of Plk4 stable cell lines.

<p>Each error bar is one standard error. CK, control; NN, ambient CO₂ with N fertilizer; CC, elevated CO₂ without N fertilizer; CN, elevated CO₂ with N fertilizer. (a-c) <i>A</i>. <i>acuminatissima</i>; (d-f) <i>S</i>. <i>hancei</i>; (g-i) <i>C</i>. <i>hystrix</i>; (j-l) <i>O</i>. <i>pinnata</i>; (m-o) <i>S</i>. <i>superba</i>.</p

Anapole mediated giant photothermal nonlinearity in nanostructured silicon

Featured with a plethora of electric and magnetic Mie resonances, high index dielectric nanostructures offer a versatile platform to concentrate light-matter interactions at the nanoscale. By integrating unique features of far-field scattering control and near-field concentration from radiationless anapole states, here, we demonstrate a giant photothermal nonlinearity in single subwavelength-sized silicon nanodisks. The nanoscale energy concentration and consequent near-field enhancements mediated by the anapole mode yield a reversible nonlinear scattering with a large modulation depth and a broad dynamic range, unveiling a record-high nonlinear index change up to 0.5 at mild incident light intensities on the order of MW/cm2. The observed photothermal nonlinearity showcases three orders of magnitude enhancement compared with that of unstructured bulk silicon, as well as nearly one order of magnitude higher than that through the radiative electric dipolar mode. Such nonlinear scattering can empower distinctive point spread functions in confocal reflectance imaging, offering the potential for far-field localization of nanostructured Si with an accuracy approaching 40 nm. Our findings shed new light on active silicon photonics based on optical anapoles

Drug Use and Sex Work: Competing Risk Factors for Newly Acquired HIV in Yunnan, China

ObjectiveTo investigate the HIV incidence and its related factors among female sex workers (FSWs) in a high prevalence area where injection drug use is also widely documented.MethodA cross-sectional study of 1642 female sex workers (FSWs) was conducted in Honghe Prefecture of Yunnan Province. Interviewed-questionnaires were administrated to collect information on sexual partnerships, condom use and illicit drug using behaviors etc. Blood samples were collected to test for HIV antibodies, and all HIV seropositive specimens were tested with the BED IgG capture-based enzyme immunosorbent assay (BED-CEIA) to distinguish between new and established HIV infection (<153 days).Results15.9% (261/1642) of participants reported ever having used drugs, and 7.4% had injected in recent 3 months. The overall HIV prevalence was 10.2% (168/1642), among which 16.7% (28/168) were identified as recent infections using BED-CEIA. The crude HIV incidence estimated from BED-CEIA results was 4.4 (95%CI 2.8–6.0) /100 person years (PY). Multivariate logistic analysis showed that an illicit drug using history (by either self-reporting or urine opiates testing) was both significant risk factors both for HIV established and recent infection (each p<0.05). Drug using FSWs (DU-FSW) reported more male clients in the previous week, and had significantly higher prevalence of HIV, chlamydia trachomatis and HSV-2 as compared to non DU-FSW (each p<0.05).ConclusionOur results show that a history of drug use poses significant risks for both new and established HIV infection among FSWs, and that HIV-incidence among Honghe FSWs is relatively high compared to similar populations. Comprehensive interventions targeted at DU-FSWs' injection drug using and high risk sexual behaviors are urgently needed to reduce the rapid spread of HIV epidemic

Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals &lt;1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data