Estimating cetacean population trends from static acoustic monitoring data using Paired Year Ratio Assessment (PYRA)

This is the final version. Available on open access from Public Library of Science via the DOI in this recordData Availability: All relevant data are within the manuscript and its Supporting information files.The cetacean conservationist is often faced with evaluating population trends from abundance data that are either sparse or recorded at different times in different years. The presence of diel or seasonal patterns in the data together with unplanned gaps is often problematic. Such data are typical of those obtained from static acoustic monitoring. We present a simple and transparent non-parametric trend evaluation method, ‘Paired Year Ratio Assessment (PYRA)’ that uses only whole days of data wherever they are present in each of successive pairs of periods of 365 days. We provide a quantitative comparison of the performance of PYRA with traditional generalised additive models (GAMS) and nonparametric randomisation tests that require a greater level of skill and experience for both application and interpretation. We conclude that PYRA is a powerful tool, particularly in the context of identifying population trends which is often the main aim of conservation-targeted acoustic monitoring.Innovate UKChelonia UK Ltd.Research Englan

Biology and ecology of the world’s largest invertebrate, the colossal squid (Mesonychoteuthis hamiltoni): a short review

The colossal squid Mesonychoteuthis hamiltoni (Robson 1925) is the largest (heaviest) living invertebrate and although it is preyed upon by many top predators, its basic biology and ecology remain one of the ocean’s great mysteries. The present study aims to review the current biological knowledge on this squid. It is considered to be endemic in the Southern Ocean (SO) with a circumpolar distribution spreading from the Antarctic continent up to the Sub-Antarctic Front. Small juveniles (<40 mm mantle length) are mainly found from the surface to 500 m, and the late juvenile stages are assumed to undergo ontogenetic descent to depths reaching 2000 m. Thus, this giant spends most of its life in the meso- and bathypelagic realms, where it can reach a total length of 6 m. The maximum weight recorded so far was 495 kg. M. hamiltoni is presently reported from the diets of 17 different predator species, comprising penguins and other seabirds, fishes and marine mammals, and may feed on various prey types, including myctophids, Patagonian toothfish, sleeper sharks and other squid. Stable isotopic analysis places the colossal squid as one of the top predators in the SO. It is assumed that this squid is not capable of high-speed predator–prey interactions, but it is rather an ambush predator. Its eyes, the largest on the planet, seem to have evolved to detect very large predators (e.g., sperm whales) rather than to detect prey at long distances. The study of this unique invertebrate giant constitutes a valuable source of insight into the biophysical principles behind body-size evolution

Acclimation effect and fitness cost of copper resistance in the marine copepod Tigriopus japonicus

Copper (Cu) contamination is common and widespread in coastal marine environments. This study used the marine copepod Tigriopus japonicus to test whether Cu resistance can be developed through multigeneration acclimation to elevated Cu levels and whether the resistance has a fitness cost. T. japonicus (F0) were acclimated to three Cu concentrations (0, 10, and 100 μg l-1) and offspring (F1 and F2) of each treatment were subsequently acclimated at these three concentrations, respectively. Our results evidently indicated that Cu resistance of the copepod was increased even after one generation of acclimation to 100 μg Cu l-1. The acquired Cu resistance had a fitness cost, as the intrinsic population growth rate of this Cu resistant lineage was significantly lower than the control. The Cu resistance of the offspring from Cu resistant copepods, when raised under control conditions, returned to a level comparable to the control implying a plastic physiological adaptation. © 2008 Elsevier Inc. All rights reserved.link_to_subscribed_fulltex

Better bootstrap estimation of hazardous concentration thresholds for aquatic assemblages

The introduction of species sensitivity distribution (SSD) approaches to ecological risk assessment offers the potential for a more transparent scientific basis for the derivation of predicted no-effect concentrations. However, conventional SSD methodologies have relied on standard distributions (e.g., log logistic, log normal) that are not necessarily based on sound ecological or statistical grounds. More recently, bootstrap resampling techniques that do not rely on distributional assumptions have been applied to the problem. Here we describe how a more advanced bootstrap methodology may be applied to derive better point estimates and confidence intervals for SSD estimates of safe environmental concentrations. Motivated by the fact that the true SSD may not fit any standard model category, we go on to consider a hybrid bootstrap regression approach. This can yield a substantially different estimate for the SSD when compared with both the basic bootstrap and the more frequently used parametric curve approaches. With increasing use of SSDs in ecological risk assessment, it is now imperative that the scientific community develops agreement over appropriate methods for their derivation.link_to_subscribed_fulltex

Time should be considered in developmental ecotoxicity test

Developmental toxicity tests are often used for the hazard assessment of chemicals and environmental media. One of the most widely used is the oyster embryo larval test (OEL), in which the development of oyster larvae is arrested at a single fixed time (e.g. 24 or 48 h) of toxic exposure, and the proportion of normal larvae measured. However, a major problem with this conventional approach is the lack of information on temporal trends in development. In this study, Pacific oyster Crassostrea gigas embryos were exposed to nominal concentrations of copper (CuSO 4) of <0.001 (control), 0.60, 1.25, 2.5, 5.0, 10.0 and 20.0 μgl -1 (at 20°C, salinity 35‰ and pH 8.1). Three replicates from each group were arrested and examined every 8 h during 24-72 h of exposure, and the number of viable larvae developed to D-shape was determined. The results revealed that the number of viable D-shape larvae in the control increased rapidly and reached an optimum at 32 h, before declining gradually due to starvation. Analysis of covariance (ANCOVA) showed that larval developmental rates during 0-32 h were significantly inhibited by Cu at all concentrations. This paper demonstrates that arrest and measurement at different time periods are important and should be incorporated into the OEL test. This would maximise the sensitivity of the test in detecting developmental effects in spiked or environmental samples. © 2002 Elsevier Science Ltd. All rights reserved.link_to_subscribed_fulltex