The impact of mesospheric dynamics and chemistry on key chemical species: 20 years of Odin/SMR satellite observations

Coupling mechanisms between different atmospheric layers are such that changes in middle atmospheric dynamics and composition have an effect on what happens at lower altitudes and on the climate. There is therefore a need to extend climate models to include higher altitudes and to perform measurements of the middle atmosphere. Carbon monoxide (CO), water vapour (H2O) and nitric oxide (NO) are species of high scientific interest due to their aptness to being used as circulation tracers in the middle atmosphere, due to their long photochemical lifetime (for NO, this is only true during polar winter). Moreover, NO plays a decisive role for ozone (O3) chemistry. In fact, the downward branch of the middle atmospheric residual circulation is responsible for the descent of NO generated by energetic particle precipitation (EPP) in the mesosphere and lower thermosphere (MLT) to lower altitudes where it is involved in catalytic destruction of O3. However, the estimates on the amount of EPP NO thus descending still present large uncertainties. In addition to this, NO observations allow us to estimate its oscillation in concentration due to atmospheric solar tides in the middle atmosphere. Among the satellite instruments currently performing remote sensing of the middle atmosphere, the Sub-Millimetre Radiometer (SMR) on board the Odin satellite is one of the most long-lived. SMR has indeed been performing limb sounding of the middle atmosphere for 21 years. However, the CO and H2O data sets are both affected by instrumental artifacts that resulted in a misestimation of the two species’ concentration and, in the case of CO, also caused failure of the retrieval process. Papers 1 and 2 included in this thesis focus on identifying the causes and correcting such artifacts, leading to two new long-term and global data sets that are now available to the scientific community to study middle atmospheric dynamics. In Paper 3, high latitude mesospheric NO observations from SMR were used to measure the flux of EPP NO transported down through the mesosphere during each polar winter, in both hemispheres. Such collection of EPP NO mesospheric fluxes is unique - considering the longevity of Odin/SMR and that it is the only instrument currently observing mesospheric NO globally. It can help reduce the uncertainties in the above mentioned estimates of descending EPP NO, providing the possibility to further study the impact of EPP on the atmosphere. Finally, the SMR NO data set was also used in Paper 4 with the aim of investigating the tidal signature in lower thermospheric NO concentration at low latitudes, with a particular focus on how NO diurnal variations are affected by nonmigrating semidiurnal atmospheric solar tides

Identification of specific molecular species and investigation of their distribution around two deeply embedded protostars (IRAS 16293-2422) observed with ALMA

In this project I have worked with high spatial and spectral resolution data on the protostellar binary system IRAS 16293-2422 obtained with Atacama Large Millimeter-submillimeter Array (ALMA). I focused in particular on one of the two sources, IRAS 16293A, which is a Class 0 protostar. IRAS 16293A has a much more complicated structure than its companion, it has indeed two outflows, along NE-SW and E-W directions, and the continuum emission appears to be one at sub-mm wavelengths but split into two at mm and cm wavelengths. Line emission toward this source is also characterized by FWHMs much higher than those observed toward IRAS 16293B, causing some lines to blend. Thus, in order to give a contribution toward the clarification of how these dynamics work, I investigated how different species are affected through studying their distribution and velocity. To do this I mapped integrated emission (Moment 0 maps) and velocity distribution (Moment 1 maps) for 33 different transitions from various species. It turned out that all species peak close to the continuum source (which represents the accretion disk) but most of the peaks present an offset towards South West, probably because of the influence of NE-SW outflow. Moreover, using rotational diagrams, I have been able to estimate methanol temperature and column density in every pixel around Source A. The temperature map doesn’t show increasing temperatures towards the center, as one would expect getting closer to the protostar, but warmer zones in the eastern and in the western part of methanol emitting region, where all methanol lines show kinetic deformation. Furthermore, methanol transitions Moment 0 maps are characterized by the presence of a horizontally elongated structure, in the lower part of methanol emitting region. I discuss how both these methanol emission features are compatible with the action of shocks generated by E-W outflow

Long-term mesospheric record of EPP-IE NO measured by Odin/SMR

Due to the long lifetime of nitric oxide (NO) in darkness conditions, during polar winter, the NO produced by energetic particle precipitation (EPP) in the mesosphere and lower thermosphere (MLT) can descend, via the middle atmospheric residual circulation, to the lower mesosphere and stratosphere, where it is involved in catalytic destruction of ozone (O3). This process is known as energetic particle precipitation indirect effect (EPP-IE). There are still significant uncertainties on the estimated amount of EPP-IE NO. To improve such estimations, we measure the total winter flux of EPP-IE NO descending through three isentropic levels in the mesosphere, that is 2600 K, 3300 K and 4000 K, based on 15 years of NO nighttime observations from the Sub-Millimetre Radiometer (SMR) on board Odin satellite. At the moment, Odin/SMR is the only instrument ensuring a global coverage of mesospheric NO observations within a few days and this is the first time EPP-IE NO has been quantified using its NO data set. Moreover, such an estimate had never been calculated for the most recent winters which are included in this study. In our method we calculate the median nighttime NO inside the polar vortex during the month prior to the descent of NO-rich air; this value is assumed as a background, produced by N2O oxidation, to be subtracted from the daily median nighttime concentrations inside the vortex; the result of this subtraction is then multiplied by the area of the vortex and the descent rate to obtain the flux; finally these daily quantities and integrated to calculate the total NO flux for each winter. We thus calculated the total EPP-IE NO flux through the mentioned levels for Northern Hemisphere (NH) winters between 2006–07 and 2020–21 and for Southern Hemisphere (SH) winters between 2007 and 2012. The total winter EPP-IE NO fluxes presented in this study are consistent with the quantities presented in similar studies. NH winters 2008–09, 2012–13 and 2018–19 are the ones presenting the highest NO fluxes at all levels. They are winters characterised by sudden stratospheric warmings followed by elevated stratopause (SSW-ES) events. The measured fluxes vary between 490 and 1000 Mmol at 4000 K, 310 and 720 Mmol at 3300 K, 270 and 510 Mmol at 2600 K. All other NH and SH winters are characterised by sensibly lower values than SSW-ES winters. The fluxes from these more dynamically quiet winters vary from winter to winter following a trend similar to the one of geomagnetic activity, as indicated by the variations in Ap index. These results indicate that the variability in the total EPP-IE NO fluxes is dominated by dynamics during the SSW-ES winters, whereas during the remaining winters it is geomagnetic activity that plays a major role

Autochthonous fermentation starters for the industrial production of Negroamaro wines

Abstract The aim of the present study was to establish a new procedure for the oenological selection of Saccharomyces cerevisiae strains isolated from natural must fermentations of an important Italian grape cultivar, denoted as "Negroamaro". For this purpose, 108 S. cerevisiae strains were selected as they did not produce H2S and then assayed by microfermentation tests. The adopted procedure made it possible to identify 10 strains that were low producers of acetic acid and hydrogen sulphide and showed that they completed sugar consumption during fermentation. These strains were characterized for their specific oenological and technological properties and, two of them, strains 6993 and 6920, are good candidates as industrial starter cultures. A novel protocol was set up for their biomass production and they were employed for industrial-scale fermentation in two industrial cellars. The two strains successfully dominated the fermentation process and contributed to increasing the wines' organoleptic quality. The proposed procedure could be very effective for selecting "company-specific" yeast strains, ideal for the production of typical regional wines. "Winery" starter cultures could be produced on request in a small plant just before or during the vintage season and distributed as a fresh liquid concentrate culture

Synthesis and Pharmacological Evaluation of a Novel Peptide Based on Anemonia sulcata BDS-I Toxin as a New KV3.4 Inhibitor Exerting a Neuroprotective Effect Against Amyloid-β Peptide

There is increasing evidence that the fast-inactivating potassium current IA, encoded by KV3. 4 channels, plays an important role in Alzheimer's Disease (AD), since the neurotoxic β-amyloid peptide1-42 (Aβ1-42) increases the IA current triggering apoptotic processes. The specific inhibition of KV3.4 by the marine toxin extracted from Anemonia sulcata, named blood depressing substance-I (BDS-I), reverts the Aβ peptide-induced cell death. The aim of the present study was to identify the smallest fragments of BDS-I, obtained by peptide synthesis, able to inhibit KV3.4 currents. For this purpose, whole-cell patch clamp technique was used to evaluate the effects of BDS-I fragments on KV3.4 currents in CHO cells heterologously expressing KV3.4. We found that BDS-I[1-8] fragment, containing the N-terminal octapeptide sequence of full length BDS-I, was able to inhibit KV3.4 currents in a concentration dependent manner, whereas the scrambled sequence of BDS-I[1-8] and all the other fragments obtained from BDS-I full length were ineffective. As we demonstrated in a previous study, BDS-I full length is able to counteract Aβ1-42-induced enhancement of KV3.4 activity, preventing Aβ1-42-induced caspase-3 activation and the abnormal nuclear morphology in NGF-differentiated PC-12 cells. Similarly to BDS-I, we found that BDS-I[1-8] blocking KV3.4 currents prevented Aβ1-42-induced caspase-3 activation and apoptotic processes. Collectively, these results suggest that BDS-I[1-8] could represent a lead compound to be developed as a new drug targeting KV3.4 channels

Selection of indigenous yeast strains for the production of sparkling wines from native Apulian grape varieties

Abstract We report the first polyphasic characterization of native Saccharomyces cerevisiae in order to select candidate strains for the design of starter cultures tailored for Apulian sparkling wines obtained from local grape variety. In addition, it is the first survey in our region that propose the selection of autochthonous starter cultures for sparkling wine i) including a preliminary tailored genotypic and technological screening, and ii) monitoring analytical contribution during secondary fermentation in terms of volatile compounds (VOCs). Furthermore, we exploit the potential contribute of autochthonous cultures throughout the productive chain, including the possible improvement of base wine. One representative strain from each cluster was characterized i) for tolerance to abiotic and biotic stressors peculiar of sparkling wine fermentation, ii) for the performances in base wine production, and iii) for the aptitudes to promote in-bottle secondary fermentation in white and rose sparkling wines, both obtained from Apulian grape varieties. Genetic characterization led to group 164 S. cerevisiae in 16 genetic clusters based on interdelta profiles. Stress tolerance assays shown a certain correlation with fermentative attitude. Our evidences demonstrated a different fermentative behavior and release of VOCs of the different strains in association with primary and secondary fermentations and as function of wine and rose sparkling wine. Furthermore, performances in white/rose sparkling wines have been found to be strain-dependent characters. Overall, we propose different strains as biotechnological resources suitable to improve the quality of regional sparkling wines and to provide a driver of innovation/segmentation in the market

Molecular and Technological Characterization of Saccharomyces cerevisiae

The characterization of autochthonous Saccharomyces cerevisiae strains is an important step towards the conservation and employment of microbial biodiversity. The utilization of selected autochthonous yeast strains would be a powerful tool to enhance the organoleptic and sensory properties of typical regional wines. In fact, indigenous yeasts are better tailored to a particular must and because of this they are able to praise the peculiarities of the derived wine. The present study described the biodiversity of indigenous S. cerevisiae strains isolated from natural must fermentations of an ancient and recently rediscovered Apulian grape cultivar, denoted as “Susumaniello.” The yeast strains denoted by the best oenological and technological features were identified and their fermentative performances were tested by either laboratory assay. Five yeast strains showed that they could be excellent candidates for the production of industrial starter cultures, since they dominated the fermentation process and produced wines characterized by peculiar oenological and organoleptic features

Hitch-hikers of the sea: concurrent morphological and molecular identification of Symplegma brakenhielmi (Tunicata: Ascidiacea) in the western Mediterranean Sea

We report here one of the first records of the non-indigenous colonial ascidian Symplegma brakenhielmi (Michaelsen, 1904) in the western Mediterranean Sea. Colonies of this invasive species have been collected in 2014 and 2018 along North-eastern Sardinia coasts (Olbia, Italy). Further colonies have been observed in 2016 in the Mar Piccolo basin (Gulf of Taranto, Italy). Both areas are strongly influenced by anthropogenic activities such as commercial shipping and aquaculture, suggesting these human-mediated pathways the most likely vectors of introduction. In both areas, the colonies present two different color phenotypes, the yellow and the red type, with the yellow coloration never found before in the Mediterranean Sea. Morphological and DNA barcode analyses of the collected specimens show that both these color types belong to the same species. Phylogenetic and species delimitation analyses based on the DNA barcode confirm our identification as S. brakenhielmi, but also indicate a surprisingly high similarity with published sequences of other two species, including the co-generic species Symplegma rubra Monniot, 1972. Morphological and molecular examination of a large number of samples of these species would be need in the near future to clarify this issue

Circulating microRNA (miRNA) expression profiling in plasma of patients with gestational diabetes mellitus reveals upregulation of miRNA miR-330-3p

Gestational diabetes mellitus (GDM) is characterized by insulin resistance accompanied by low/absent beta-cell compensatory adaptation to the increased insulin demand. Although the molecular mechanisms and factors acting on beta-cell compensatory response during pregnancy have been partially elucidated and reported, those inducing an impaired beta-cell compensation and function, thus evolving in GDM, have yet to be fully addressed. MicroRNAs (miRNAs) are a class of small endogenous non-coding RNAs, which negatively modulate gene expression through their sequence-specific binding to 3'UTR of mRNA target. They have been described as potent modulators of cell survival and proliferation and, furthermore, as orchestrating molecules of beta-cell compensatory response and function in diabetes. Moreover, it has been reported that miRNAs can be actively secreted by cells and found in many biological fluids (e.g., serum/plasma), thus representing both optimal candidate disease biomarkers and mediators of tissues crosstalk(s). Here, we analyzed the expression profiles of circulating miRNAs in plasma samples obtained from n = 21 GDM patients and from n = 10 non-diabetic control pregnant women (24-33 weeks of gestation) using TaqMan array microfluidics cards followed by RT-real-time PCR single assay validation. The results highlighted the upregulation of miR-330-3p in plasma of GDM vs non-diabetics. Furthermore, the analysis of miR-330-3p expression levels revealed a bimodally distributed GDM patients group characterized by high or low circulating miR-330 expression and identified as GDM-miR-330highand GDM-miR-330low. Interestingly, GDM-miR-330highsubgroup retained lower levels of insulinemia, inversely correlated to miR-330-3p expression levels, and a significant higher rate of primary cesarean sections. Finally, miR-330-3p target genes analysis revealed major modulators of beta-cell proliferation and of insulin secretion, such as the experimentally validated genes E2F1 and CDC42 as well as AGT2R2, a gene involved in the differentiation of mature beta-cells. In conclusion, we demonstrated that plasma miR-330-3p could be of help in identifying GDM patients with potential worse gestational diabetes outcome; in GDM, miR-330-3p may directly be transferred from plasma to beta-cells thus modulating key target genes involved in proliferation, differentiation, and insulin secretion