Ultrafast 2D-IR spectroscopy of intensely optically scattering pelleted solid catalysts

ACKNOWLEDGMENTS This work was supported by a UKRI Future Leaders Fellowship grant (Grant No. MR/S015574/1), STFC-UKRI program access to CLF-ULTRA (Grant No. LSF1828), direct access to CLF-ULTRA (Grant Nos. Apps 17330043 and 19130012), and a group residency in the Research Complex at Harwell (RCaH). The authors are grateful to Kathryn Welsby, Ivalina Minova, and Santhosh Matam for support early in the project with samples and the Linkam cell. Mr. John Still of the School of Geosciences, University of Aberdeen is thanked for the SEM images, and Kieran Farrell/Martin Zanni is thanked for the discussion about the polarizations of the beams creating the thermal transientsPeer reviewedPublisher PD

Ultrafast Wiggling and Jiggling: Ir_2(1,8-diisocyanomenthane)_4^(2+)

Binuclear complexes of d^8 metals (Pt^(II), Ir^I, Rh^I,) exhibit diverse photonic behavior, including dual emission from relatively long-lived singlet and triplet excited states, as well as photochemical energy, electron, and atom transfer. Time-resolved optical spectroscopic and X-ray studies have revealed the behavior of the dimetallic core, confirming that M–M bonding is strengthened upon dσ* → pσ excitation. We report the bridging ligand dynamics of Ir2(1,8-diisocyanomenthane)_4^(2+)(Ir(dimen)), investigated by fs–ns time-resolved IR spectroscopy (TRIR) in the region of C≡N stretching vibrations, ν(C≡N), 2000–2300 cm^(–1). The ν(C≡N) IR band of the singlet and triplet dσ*pσ excited states is shifted by −22 and −16 cm^(–1) relative to the ground state due to delocalization of the pσ LUMO over the bridging ligands. Ultrafast relaxation dynamics of the ^1dσ*pσ state depend on the initially excited Franck–Condon molecular geometry, whereby the same relaxed singlet excited state is populated by two different pathways depending on the starting point at the excited-state potential energy surface. Exciting the long/eclipsed isomer triggers two-stage structural relaxation: 0.5 ps large-scale Ir–Ir contraction and 5 ps Ir–Ir contraction/intramolecular rotation. Exciting the short/twisted isomer induces a ∼5 ps bond shortening combined with vibrational cooling. Intersystem crossing (70 ps) follows, populating a ^3dσ*pσ state that lives for hundreds of nanoseconds. During the first 2 ps, the ν(C≡N) IR bandwidth oscillates with the frequency of the ν(Ir–Ir) wave packet, ca. 80 cm^(–1), indicating that the dephasing time of the high-frequency (16 fs)^(−1) C≡N stretch responds to much slower (∼400 fs)^(−1)Ir–Ir coherent oscillations. We conclude that the bonding and dynamics of bridging di-isocyanide ligands are coupled to the dynamics of the metal–metal unit and that the coherent Ir–Ir motion induced by ultrafast excitation drives vibrational dephasing processes over the entire binuclear cation

2D-infrared spectroscopy of proteins in water : using the solvent thermal response as an internal standard

Ultrafast two-dimensional infrared (2D-IR) spectra can now be obtained in a matter of seconds, opening up the possibility of high-throughput screening applications of relevance to the biomedical and pharmaceutical sectors. Determining quantitative information from 2D-IR spectra recorded on different samples and different instruments is however made difficult by variations in beam alignment, laser intensity, and sample conditions. Recently, we demonstrated that 2D-IR spectroscopy of the protein amide I band can be performed in aqueous (H2O) rather than deuterated (D2O) solvents, and we now report a method that uses the magnitude of the associated thermal response of H2O as an internal normalization standard for 2D-IR spectra. Using the water response, which is temporally separated from the protein signal, to normalize the spectra allows significant reduction of the impact of measurement-to-measurement fluctuations on the data. We demonstrate that this normalization method enables creation of calibration curves for measurement of absolute protein concentrations and facilitates reproducible difference spectroscopy methodologies. These advances make significant progress toward the robust data handling strategies that will be essential for the realization of automated spectral analysis tools for large scale 2D-IR screening studies of protein-containing solutions and biofluids

Monitoring Base Specific Dynamics during Melting of DNA-Ligand Complexes using Temperature-Jump Time-Resolved Infrared Spectroscopy

Ultrafast time-resolved infrared spectroscopy employing nanosecond temperature-jump initiation has been used to study the melting of double-stranded (ds)DNA oligomers in the presence and absence of minor groove-binding ligand Hoechst 33258. Ligand binding to ds(5′-GCAAATTTCC-3′), which binds Hoechst 33258 in the central A-tract region with nanomolar affinity, causes a dramatic increase in the timescales for strand melting from 30 to 250 μs. Ligand binding also suppresses premelting disruption of the dsDNA structure, which takes place on 100 ns timescales and includes end-fraying. In contrast, ligand binding to the ds(5′-GCATATATCC-3′) sequence, which exhibits an order of magnitude lower affinity for Hoechst 33258 than the A-tract motif, leads to an increase by only a factor of 5 in melting timescales and reduced suppression of premelting sequence perturbation and end-fraying. These results demonstrate a dynamic impact of the minor groove ligand on the dsDNA structure that correlates with binding strength and thermodynamic stabilization of the duplex. Moreover, the ability of the ligand to influence base pairs distant from the binding site has potential implications for allosteric communication mechanisms in dsDNA

Recombination, Solvation and Reaction of CN Radicals Following Ultraviolet Photolysis of ICN in Organic Solvents

The fates of CN radicals produced by ultraviolet (UV) photolysis of ICN in various organic solvents have been examined by transient electronic and vibrational absorption spectroscopy (TEAS and TVAS). Near-UV and visible bands in the TEAS measurement enable direct observation of the CN radicals and their complexes with the solvent molecules. Complementary TVAS measurements probe the products of CN–radical reactions. Geminate recombination to form ICN and INC is a minor pathway on the 150 fs −1300 ps time scales of our experiments in the chosen organic solvents; nonetheless, large infrared transition dipole moments permit direct observation of INC that is vibrationally excited in the CN stretching mode. The time constants for INC vibrational cooling range from 30 ps in tetrahydrofuran (THF) to 1400 ps in more weakly interacting solvents such as chloroform. The major channel for CN removal in the organic solvents is reaction with solvent molecules, as revealed by depletion of solvent absorption bands and growth of product bands in the TVA spectra. HCN is a reaction product of hydrogen atom abstraction in most of the photoexcited solutions, and forms with vibrational excitation in both the C–H and CN stretching modes. The vibrational cooling rate of the CN stretch in HCN depends on the solvent, and follows the same trend as the cooling rate of the CN stretch in INC. However, in acetonitrile solution an additional reaction pathway produces C₃H₃N₂^• radicals, which release HCN on a much longer time scale