Increased Bufflehead (Bucephala albeola) Breeding Activity in Minnesota

Buffleheads (Bucephala albeola) predominantly nest in the boreal forests and aspen parklands of Canada and Alaska. Historically, Buffleheads were common migrants but not summer residents in Minnesota. However, recent observations in Minnesota and surrounding states suggest increased breeding activity in the region. In 1978, the first Bufflehead brood in Minnesota was recorded at East Park Wildlife Management Area. Annually, Agassiz National Wildlife Refuge (NWR) has conducted pair and brood surveys, with species-specific records available from 1990 to 2014. We report an increase in numbers of Bufflehead breeding pairs and broods at Agassiz NWR and new pair observations in surrounding areas

The genome sequence and effector complement of the flax rust pathogen Melampsora lini

Rust fungi cause serious yield reductions on crops, including wheat, barley, soybean, coffee, and represent real threats to global food security. Of these fungi, the flax rust pathogen Melampsora lini has been developed most extensively over the past 80 years as a model to understand the molecular mechanisms that underpin pathogenesis. During infection, M. lini secretes virulence effectors to promote disease. The number of these effectors, their function and their degree of conservation across rust fungal species is unknown. To assess this, we sequenced and assembled de novo the genome of M. lini isolate CH5 into 21,130 scaffolds spanning 189 Mbp (scaffold N50 of 31 kbp). Global analysis of the DNA sequence revealed that repetitive elements, primarily retrotransposons, make up at least 45% of the genome. Using ab initio predictions, transcriptome data and homology searches, we identified 16,271 putative protein-coding genes. An analysis pipeline was then implemented to predict the effector complement of M. lini and compare it to that of the poplar rust, wheat stem rust and wheat stripe rust pathogens to identify conserved and species-specific effector candidates. Previous knowledge of four cloned M. lini avirulence effector proteins and two basidiomycete effectors was used to optimize parameters of the effector prediction pipeline. Markov clustering based on sequence similarity was performed to group effector candidates from all four rust pathogens. Clusters containing at least one member from M. lini were further analyzed and prioritized based on features including expression in isolated haustoria and infected leaf tissue and conservation across rust species. Herein, we describe 200 of 940 clusters that ranked highest on our priority list, representing 725 flax rust candidate effectors. Our findings on this important model rust species provide insight into how effectors of rust fungi are conserved across species and how they may act to promote infection on their hosts.This work was funded by a grant from the CSIRO Transformational Biology Capability Platform to Adnane Nemri. Claire Anderson was supported by an ARC Discovery Grant (DP120104044) awarded to David A. Jones and Peter N. Dodds

Dietary Habits of the Common Rodents in an Agrecosystem in Argentina

Dietary habits of five common rodents in agroecosystems on the central Argentine Pampa were studied for 15 months using microhistological analysis of stomach contents. All five rodent species were omnivorous, but proportions of major dietary items (arthropods, dicot leaves and seeds, monocot leaves and seeds) varied among species and seasons. Akodon azarae largely was entomophagous; arthropods formed 41-62% of the diet in all seasons. The other four species (Calomys musculinus, Calomys laucha, Bolomys obscurus, and Oligoryzomys flavescens) consumed most diet items throughout the year, but relative proportions varied among seasons. Leaves formed a relatively minor proportion of the diet (12- 16% overall for all species) throughout the year. All species except A. azarae consumed higher quantities of seeds (50-73% of stomach volume) than arthropods (15-35%) during autumn and winter but switched to higher quantities of arthropods (30-53%) in spring and summer. Diet breadth was narrower and overlap generally highest during winter when all species were forced to subsist on a reduced set of available resources. Of 28 plant species with \u3e2% cover in the environment, 25 were identified in stomachs of one or more of the five rodent species. The most important plant species in the diet were corn and soybeans (mostly grain), seed of Johnson grass (Sorghum halepense), chickweed (Stellaria media), and Amaranthus. High consumption of arthropods, especially by A. azarae, contraindicates the broad-scale use of rodenticides until the role of that rodent species in the control of pest insects can be ascertained

Dietary Habits of the Common Rodents in an Agrecosystem in Argentina

Dietary habits of five common rodents in agroecosystems on the central Argentine Pampa were studied for 15 months using microhistological analysis of stomach contents. All five rodent species were omnivorous, but proportions of major dietary items (arthropods, dicot leaves and seeds, monocot leaves and seeds) varied among species and seasons. Akodon azarae largely was entomophagous; arthropods formed 41-62% of the diet in all seasons. The other four species (Calomys musculinus, Calomys laucha, Bolomys obscurus, and Oligoryzomys flavescens) consumed most diet items throughout the year, but relative proportions varied among seasons. Leaves formed a relatively minor proportion of the diet (12- 16% overall for all species) throughout the year. All species except A. azarae consumed higher quantities of seeds (50-73% of stomach volume) than arthropods (15-35%) during autumn and winter but switched to higher quantities of arthropods (30-53%) in spring and summer. Diet breadth was narrower and overlap generally highest during winter when all species were forced to subsist on a reduced set of available resources. Of 28 plant species with \u3e2% cover in the environment, 25 were identified in stomachs of one or more of the five rodent species. The most important plant species in the diet were corn and soybeans (mostly grain), seed of Johnson grass (Sorghum halepense), chickweed (Stellaria media), and Amaranthus. High consumption of arthropods, especially by A. azarae, contraindicates the broad-scale use of rodenticides until the role of that rodent species in the control of pest insects can be ascertained

FastJet user manual

FastJet is a C++ package that provides a broad range of jet finding and analysis tools. It includes efficient native implementations of all widely used 2-to-1 sequential recombination jet algorithms for pp and e+e- collisions, as well as access to 3rd party jet algorithms through a plugin mechanism, including all currently used cone algorithms. FastJet also provides means to facilitate the manipulation of jet substructure, including some common boosted heavy-object taggers, as well as tools for estimation of pileup and underlying-event noise levels, determination of jet areas and subtraction or suppression of noise in jets.Comment: 69 pages. FastJet 3 is available from http://fastjet.fr

Cosmic optical activity in the spacetime of a scalar-tensor screwed cosmic string

Measurements of radio emission from distant galaxies and quasars verify that the polarization vectors of these radiations are not randomly oriented as naturally expected. This peculiar phenomenon suggests that the spacetime intervening between the source and observer may be exhibiting some sort of optical activity, the origin of which is not known. In the present paper we provide a plausible explanation to this phenomenon by investigating the r\^ole played by a Chern-Simons-like term in the background of an ordinary or superconducting screwed cosmic string in a scalar-tensor gravity. We discuss the possibility that the excess in polarization of the light from radio-galaxies and quasars can be understood as if the electromagnetic waves emitted by these cosmic objects interact with a scalar-tensor screwed cosmic string through a Chern-Simons coupling. We use current astronomical data to constrain possible values for the coupling constant of this theory, and show that it turns out to be: $\lambda \sim 10^{-26}$ eV, which is two orders of magnitude larger than in string-inspired theories.Comment: Revised version, to appear in Phys. Rev.

Optimal jet radius in kinematic dijet reconstruction

Obtaining a good momentum reconstruction of a jet is a compromise between taking it large enough to catch the perturbative final-state radiation and small enough to avoid too much contamination from the underlying event and initial-state radiation. In this paper, we compute analytically the optimal jet radius for dijet reconstructions and study its scale dependence. We also compare our results with previous Monte-Carlo studies.Comment: 30 pages, 11 figures; minor corrections; published in JHE

Artificial Multienzyme Scaffolds: Pursuing in Vitro Substrate Channeling with an Overview of Current Progress

Artificial multienzyme scaffolds are being developed for in vitro cascaded biocatalytic activity and, in particular, accessing substrate channeling. This review covers progress in this field over t..