Underwater optical wireless communications : depth dependent variations in attenuation

Depth variations in the attenuation coefficient for light in the ocean were calculated using a one-parameter model based on the chlorophyll-a concentration Cc and experimentally-determined Gaussian chlorophyll-depth profiles. The depth profiles were related to surface chlorophyll levels for the range 0–4  mg/m2, representing clear, open ocean. The depth where Cc became negligible was calculated to be shallower for places of high surface chlorophyll; 111.5 m for surface chlorophyll 0.8<Cc<2.2  mg/m3 compared with 415.5 m for surface Cc<0.04  mg/m3. Below this depth is the absolute minimum attenuation for underwater ocean communication links, calculated to be 0.0092  m−1 at a wavelength of 430 nm. By combining this with satellite surface-chlorophyll data, it is possible to quantify the attenuation between any two locations in the ocean, with applications for low-noise or secure underwater communications and vertical links from the ocean surface

Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA.

High-throughput short-read sequencing has revolutionized how transcriptomes are quantified and annotated. However, while Illumina short-read sequencers can be used to analyze entire transcriptomes down to the level of individual splicing events with great accuracy, they fall short of analyzing how these individual events are combined into complete RNA transcript isoforms. Because of this shortfall, long-distance information is required to complement short-read sequencing to analyze transcriptomes on the level of full-length RNA transcript isoforms. While long-read sequencing technology can provide this long-distance information, there are issues with both Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) long-read sequencing technologies that prevent their widespread adoption. Briefly, PacBio sequencers produce low numbers of reads with high accuracy, while ONT sequencers produce higher numbers of reads with lower accuracy. Here, we introduce and validate a long-read ONT-based sequencing method. At the same cost, our Rolling Circle Amplification to Concatemeric Consensus (R2C2) method generates more accurate reads of full-length RNA transcript isoforms than any other available long-read sequencing method. These reads can then be used to generate isoform-level transcriptomes for both genome annotation and differential expression analysis in bulk or single-cell samples

Young core collapse supernova remnants and their supernovae

Massive star supernovae can be divided into four categories depending on the amount of mass loss from the progenitor star and the star's radius: red supergiant stars with most of the H envelope intact (SN IIP), stars with some H but most lost (IIL, IIb), stars with all H lost (Ib, Ic), and blue supergiant stars with a massive H envelope (SN 1987A-like). Various aspects of the immediate aftermath of the supernova are expected to develop in different ways depending on the supernova category: mixing in the supernova, fallback on the central compact object, expansion of any pulsar wind nebula, interaction with circumstellar matter, and photoionization by shock breakout radiation. The observed properties of young supernova remnants allow many of them to be placed in one of the supernova categories; all the categories are represented except for the SN 1987A-like type. Of the remnants with central pulsars, the pulsar properties do not appear to be related to the supernova category. There is no evidence that the supernova categories form a mass sequence, as would be expected in a single star scenario for the evolution. Models for young pulsar wind nebulae expanding into supernova ejecta indicate initial pulsar periods of 10-100 ms and approximate equipartition between particle and magnetic energies. Ages are obtained for pulsar nebulae, including an age of 2400 pm 500 yr for 3C58, which is not consistent with an origin in SN 1181. There is no evidence that mass fallback plays a role in neutron star properties.Comment: 43 pages, ApJ, revised, discussion of 3C58 changed, in press for Feb. 1, 200

Melting of peridotites through to granites: a simple thermodynamic model in the system KNCFMASHTOCr

A new set of thermodynamic models is presented for calculating phase relations in bulk compositions extending from peridotite to granite, from 0.001 to 70 kbar and from 650 °C to peridotite liquidus temperatures, in the system K2O–Na2O–CaO–FeO–MgO–Al2O3–SiO2–H2O–TiO2–Fe2O3–Cr2O3 (KNCFMASHTOCr). The models may be used to calculate phase equilibria in partial melting of a large range of mantle and crustal compositions. They provide a good fit to experimental phase relation topologies and melt compositions across the compositional range of the model. Compared with the preliminary model of Jennings & Holland (2015) for peridotite–basalt melting relations, the inclusion of K2O and TiO2 allows for better modelling of small melt fractions in peridotite melting, and in reproducing rutile-bearing eclogite melting at high pressures. An improved order–disorder model for spinel is now incorporated. Above 10 kbar pressure, wet partial melting relations may be significantly affected by the dissolution of silicates in aqueous fluid, so the set of models includes an aqueous low-density silicate-bearing fluid in addition to a high-density H2O-bearing silicate melt. Oxygen fugacity may be readily calculated for the whole range of bulk compositions investigated, and the effect of water content on melt fO2 is assessed

SALMON POISONING DISEASE: RESEARCH ON A POTENTIAL METHOD OF LETHAL CONTROL FOR COYOTES

Salmon poisoning disease (SPD) was tested as a potential method of lethal control for coyotes (Canis latrans). Fresh fish containing the agents for SPD was fed to 72 captive adult coyotes. Coho (Oncorhunchus kisutch) and steel head salmon (Salmo gairdneri) from Oregon hatcheries were the principal species of fish used. Coyotes that ate the fish developed observable signs of SPD in a mean of 8 days. The overall rate of mortality was 50%, and death occurred in a mean of 20 days from consuming fish. Coyotes that died from SPD lost a mean of 32% of their body weight during the course of the disease. Other coyotes were fed preserved fish samples or administered oral or intraperitoneal treatments of lymph node matter from coyotes that died from SPD. In light of the relatively low rate of mortality observed, feeding coyotes fish to cause death from SPD appears to be a method of questionable value for controlling numbers of adult coyotes in areas of livestock production unless fish with a highly virulent strain of the SPD agent can be obtained

Discovery of a Luminous Quasar in the Nearby Universe

In the course of the Pico dos Dias survey (PDS), we identified the stellar like object PDS456 at coordinates alpha = 17h 28m 19.796s, delta = -14deg 15' 55.87'' (epoch 2000), with a relatively nearby (z = 0.184) and bright (B = 14.69) quasar. Its position at Galactic coordinates l_II = 10.4deg, b_II = +11.2deg, near the bulge of the Galaxy, may explain why it was not detected before. The optical spectrum of PDS456 is typical of a luminous quasar, showing a broad (FWHM ~ 4000 km/s) H_\beta line, very intense FeII lines and a weak [OIII]\lambda5007 line. PDS456 is associated to the infrared source IRAS 17254-1413 with a 60 \mum infrared luminosity L_{60} = 3.8 x 10^{45} erg/s. The relatively flat slopes in the infrared (\alpha(25,60) = -0.33 and \alpha(12,25) = -0.78) and a flat power index in the optical (F_{\nu} \propto \nu^{-0.72}) may indicate a low dust content. A good match between the position of PDS456 and the position of the X-ray source RXS J172819.3-141600 implies an X-ray luminosity L_x = 2.8 x 10^{44} erg/s. The good correlation between the strength of the emission lines in the optical and the X-ray luminosity, as well as the steep optical to X-ray index estimated (\alpha_{ox} = -1.64) suggest that PDS456 is radio quiet. A radio survey previously performed in this region yields an upper limit for radio power at ~ 5 GHz of ~ 2.6 x 10^{30} erg/s/Hz. We estimate the Galactic reddening in this line-of-sight to be A_B \simeq 2.0, implying an absolute magnitude M_B = -26.7 (using H_0 = 75 km s^{-1} Mpc^{-1} and q_0 = 0). In the optical, PDS456 is therefore 1.3 times more luminous than 3C 273 and the most luminous quasar in the nearby (z \leq 0.3) Universe.Comment: 12 pages, LaTeX (aasms4.sty) + 3 figures; accepted for publication in the Astrophysical Journal Letter

Integrating user-centred design in the development of a silent speech interface based on permanent magnetic articulography

Abstract: A new wearable silent speech interface (SSI) based on Permanent Magnetic Articulography (PMA) was developed with the involvement of end users in the design process. Hence, desirable features such as appearance, port-ability, ease of use and light weight were integrated into the prototype. The aim of this paper is to address the challenges faced and the design considerations addressed during the development. Evaluation on both hardware and speech recognition performances are presented here. The new prototype shows a com-parable performance with its predecessor in terms of speech recognition accuracy (i.e. ~95% of word accuracy and ~75% of sequence accuracy), but significantly improved appearance, portability and hardware features in terms of min-iaturization and cost