338 research outputs found

    Mixing and transport of water in a karst catchment: a case study from precipitation via seepage to the spring

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    One of the best-known and largest karst areas in Germany, the Blautopf Catchment, offers unique access to waters of the unsaturated zone through a large cave system. It was investigated with stable isotopes (<sup>18</sup>O/<sup>16</sup>O and D/H ratios expressed in permille = ‰) in precipitation, seepage- and groundwater as tracers for water flow, mixing, and storage. The precipitation showed a distinct seasonality with δ<sup>18</sup>O values between −2.9 and −24.6‰ during summer and winter, respectively. However, the isotope signals in seepage water in the caves as well as the discharge were almost completely buffered and ranged around an average δ<sup>18</sup>O value of −10‰. This value was also close to the long-term average value of local precipitation, −9.3‰. The homogeneous isotopic composition of the Blautopf Spring was unexpected, as its highly variable discharge (0.3 to 32 m<sup>3</sup> s<sup>−1</sup>) is typical for a fast responsive karst system. These isotopic similarities could be explained by nearly complete mixing of the water already in the vadose zone. The data set therefore presents a case study to narrow down zones of mixing in karst catchments. It also confirms the minor role of the fast conduit system in the water balance of the Blautopf Catchment

    Storage and transport in cave seepage- and groundwater in a South German karst system

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    International audienceWe investigated one of the best-known and second largest karst areas in Germany (Blautopf Catchment) that offers a unique access waters of the unsaturated zone through a large cave system. As tracers for water flow and storage we measured stable isotopes (18O/16O and D/H ratios) in precipitation, seepage- and groundwater. The precipitation showed a distinct seasonal cycle with ?18O values between ?2.6 and ?22.6? during summer and winter, respectively. However, the isotope signals in seepage water in the caves as well as the discharge were completely buffered and ranged around an average ?18O value of ?10?. This value also matched the long-term average of the precipitation. In addition, the homogeneous isotopic composition of the Blautopf Spring was against expectation for its highly variable discharge (0.3 to 32 m3 s?1) that is typical for a fast responsive karst system. We explain the isotopic similarity between cave seepage and the Blautopf Spring (as an integral signal for groundwater) by nearly complete mixing of the water already in the vadose zone. The latter can be divided into the compartments soil, epikarst and rock matrix that all have good storage capacities and also allow diffusive exchange of solutes between mobile and less mobile matrix water. The above approach revealed new aspects about turnover and flow paths of the infiltrated water and thus helps to constrain the risk by pollution to the groundwater

    Gut microbiota analysis reveals a marked shift to bifidobacteria by a starter infant formula containing a synbiotic of bovine milk-derived oligosaccharides and Bifidobacterium animalis subsp. lactis CNCM I-3446.

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    Non-digestible milk oligosaccharides were proposed as receptor decoys for pathogens and as nutrients for beneficial gut commensals like bifidobacteria. Bovine milk contains oligosaccharides, some of which are structurally identical or similar to those found in human milk. In a controlled, randomized double-blinded clinical trial we tested the effect of feeding a formula supplemented with a mixture of bovine milk-derived oligosaccharides (BMOS) generated from whey permeate, containing galacto-oligosaccharides and 3'- and 6'-sialyllactose, and the probiotic Bifidobacterium animalis subsp. lactis (B. lactis) strain CNCM I-3446. Breastfed infants served as reference group. Compared with a non-supplemented control formula, the test formula showed a similar tolerability and supported a similar growth in healthy newborns followed for 12 weeks. The control, but not the test group, differed from the breast-fed reference group by a higher faecal pH and a significantly higher diversity of the faecal microbiota. In the test group the probiotic B. lactis increased by 100-fold in the stool and was detected in all supplemented infants. BMOS stimulated a marked shift to a bifidobacterium-dominated faecal microbiota via increases in endogenous bifidobacteria (B. longum, B. breve, B. bifidum, B. pseudocatenulatum)

    Total Intravenous Anesthesia Including Ketamine versus Volatile Gas Anesthesia for Combat-related Operative Traumatic Brain Injury

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    Background: Traumatic brain injury is a leading cause of death and severe neurologic disability. The effect of anesthesia techniques on neurologic outcomes in traumatic brain injury and potential benefits of total intravenous anesthesia (TIVA) compared with volatile gas anesthesia (VGA), although proposed, has not been well evaluated. The purpose of this study was to compare TIVA versus VGA in patients with combatrelated traumatic brain injury. Methods: The authors retrospectively reviewed 252 patients who had traumatic brain injury and underwent operative neurosurgical intervention. Statistical analyses, including propensity score and matched analyses, were performed to assess differences between treatment groups (TIVA vs. VGA) and good neurologic outcome. Results: Two hundred fourteen patients met inclusion criteria and were analyzed; 120 received VGA and 94 received TIVA. Good neurologic outcome (Glasgow Outcome Score 4 -5) and decreased mortality were associated with TIVA compared with VGA (75% vs. 54%; P ‫؍‬ 0.002 and 5% vs. 16%; P ‫؍‬ 0.02, respectively). Multivariate logistic regression found admission Glasgow Coma Scale score of 8 or greater (odds ratio, 13.3; P < 0.001) and TIVA use (odds ratio, 2.3; P ‫؍‬ 0.05) to be associated with good neurologic outcomes. After controlling for confounding factors using propensity analysis and repeated one-to-one matching of patients receiving TIVA with those receiving VGA with regard to Injury Severity Score, Glasgow Coma Scale score, base deficit, Head Abbreviated Injury Score, and craniectomy or craniotomy, the authors could not find an association between treatment and neurologic outcome. Conclusion: Total intravenous anesthesia often including ketamine was not associated with improved neurologic outcom

    NMR Derived Model of GTPase Effector Domain (GED) Self Association: Relevance to Dynamin Assembly

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    Self-association of dynamin to form spiral structures around lipidic vesicles during endocytosis is largely mediated by its ‘coiled coil’ GTPase Effector Domain (GED), which, in vitro, self-associates into huge helical assemblies. Residue-level structural characterizations of these assemblies and understanding the process of association have remained a challenge. It is also impossible to get folded monomers in the solution phase. In this context, we have developed here a strategy to probe the self-association of GED by first dissociating the assembly using Dimethyl Sulfoxide (DMSO) and then systematically monitoring the refolding into helix and concomitant re-association using NMR spectroscopy, as DMSO concentration is progressively reduced. The short segment, Arg109 - Met116, acts as the nucleation site for helix formation and self-association. Hydrophobic and complementary charge interactions on the surfaces drive self-association, as the helices elongate in both the directions resulting in an antiparallel stack. A small N-terminal segment remains floppy in the assembly. Following these and other published results on inter-domain interactions, we have proposed a plausible mode of dynamin self assembly

    A short purification process for quantitative isolation of PrP(Sc) from naturally occurring and experimental transmissible spongiform encephalopathies

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    BACKGROUND: Transmissible spongiform encephalopathies (TSEs) are neurodegenerative diseases affecting both humans and animals. They are associated with post-translational conversion of the normal cellular prion protein (PrP(C)) into a heat- and protease-resistant abnormal isoform (PrP(Sc)). Detection of PrP(Sc) in individuals is widely utilized for the diagnosis of prion diseases. METHODS: TSE brain tissue samples have been processed in order to quantitatively isolate PrP(Sc). The protocol includes an initial homogenization, digestion with proteinase K and salt precipitation. RESULTS: Here we show that over 97 percent of the PrP(Sc) present can be precipitated from infected brain material using this simple salting-out procedure for proteins. No chemically harsh conditions are used during the process in order to conserve the native quality of the isolated protein. CONCLUSION: The resulting PrP(Sc)-enriched preparation should provide a suitable substrate for analyzing the structure of the prion agent and for scavenging for other molecules with which it may associate. In comparison with most methods that exist today, the one described in this study is rapid, cost-effective and does not demand expensive laboratory equipment
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