A group finder algorithm optimised for the study of local galaxy environment

The majority of galaxy group catalogues available in the literature use the popular friends-of-friends algorithm which links galaxies using a linking length. One potential drawback to this approach is that clusters of point can be link with thin bridges which may not be desirable. Furthermore, these algorithms are designed with large-scales galaxy surveys in mind rather than small-scale, local galaxy environments, where attention to detail is important. Here we present a new simple group finder algorithm, TD-ENCLOSER, that finds the group that encloses a target galaxy of interest. TD-ENCLOSER is based on the kernel density estimation method which treats each galaxy, represented by a zero-dimensional particle, as a two-dimensional circular Gaussian. The algorithm assigns galaxies to peaks in the density field in order of density in descending order ("Top Down") so that galaxy groups "grow" around the density peaks. Outliers in under-dense regions are prevented from joining groups by a specified hard threshold, while outliers at the group edges are clipped below a soft (blurred) interior density level. The group assignments are largely insensitive to all free parameters apart from the hard density threshold and the kernel standard deviation, although this is a known feature of density-based group finder algorithms, and operates with a computing speed that increases linearly with the size of the input sample. In preparation for a companion paper, we also present a simple algorithm to select unique representative groups when duplicates occur. TD-ENCLOSER produces results comparable to those from a widely used catalogue, as shown in a companion paper. A smoothing scale of 0.3 Mpc provides the most realistic group structure.Comment: Submitted to Astronomy & Astrophysics on October 6th 2019. This paper is the first in a series of three paper

SDSS-IV MaNGA: The intrinsic shape of slow rotator early-type galaxies

By inverting the distributions of galaxies' apparent ellipticities and misalignment angles (measured around the projected half-light radius $R_{\rm e}$) between their photometric and kinematic axes, we study the intrinsic shape distribution of 189 slow rotator early-type galaxies with stellar masses $2\times 10^{11} M_{\odot}<M_\ast<2\times 10^{12} M_{\odot}$, extracted from a sample of about 2200 galaxies with integral-field stellar kinematics from the DR14 of the SDSS-IV MaNGA IFU survey. Thanks to the large sample of slow rotators, Graham+18 showed that there is clear structure in the misalignment angle distribution, with two peaks at both $0^{\circ}$ and $90^{\circ}$ misalignment (characteristic of oblate and prolate rotation respectively). Here we invert the observed distribution from Graham+18. The large sample allows us to go beyond the known fact that slow rotators are weakly triaxial and to place useful constraints on their intrinsic triaxiality distribution (around $1R_{\rm e}$) for the first time. The shape inversion is generally non-unique. However, we find that, for a wide set of model assumptions, the observed distribution clearly requires a dominant triaxial-oblate population. For some of our models, the data suggest a hint for a minor triaxial-prolate population, but a dominant prolate population is ruled out.Comment: Accepted for publication in ApJL, 10 pages, 4 figures, 1 tabl

The impact of superphosphate and surface-applied lime on the profitability and sustainability of wool production on the tablelands of NSW

Soil acidification is one of the major forms of soil degradation in higher rainfall areas of the tablelands of NSW. A grazing experiment was conducted near Sutton, NSW, to assess the effect of various rates of superphosphate, lime, sewage ash and stocking rates on wool production and sustainability between 1999 and 2008. The results from the discounted cash flow analysis show that the net present value of the treatment without lime, the lower rate of superphosphate and the lowest stocking rate returned the highest net present value of $266.30/ha. Raising the application of superphosphate from 125kg/ha every two to three years to 250kg/ha every year on un-limed and limed soil reduced the net present value by$278.70/ha and $249.30/ha, respectively. The addition of lime at the rate of 4t/ha on un-limed soil at the low superphosphate level reduced the net present value by about$234.60/ha. The net present value fell by $205.24/ha when the level of superphosphate rate increased to 250kg/ha every year. The net present value decreased as the level of stocking rate increased. We conclude that wool producers will be unlikely to use lime to ameliorate acid soil, even though production will not be sustainable, unless there are more favourable input and commodity prices in the market and government intervention.economic, acid soil, lime, superphosphate, sewage ash, stocking rate, policy,

Beta-blockers in COPD:time for reappraisal

Peer reviewedPostprin

Platform work, exploitation, and migrant worker resistance: evidence from Berlin and London

For migrant workers who do not have access to other means of income, the platform economy offers a viable yet exploitative alternative to the conventional labour market. Migrant workers are used as a source of cheap labour by platforms – and yet, they are not disempowered. They are at the heart of a growing platform worker movement. Across different international contexts, migrants have played a key role in leading strikes and other forms of collective action. This article traces the struggles of migrant platform workers in Berlin and London to explore how working conditions, work experiences, and strategies for collective action are shaped at the intersection of multiple precarities along lines of employment and migration status. Combining data collected through research by the Fairwork project with participant observation and ethnography, the article argues that migrant workers are more than an exploitable resource: they are harbingers of change

Ex vivo cytokine mRNA levels correlate with changing clinical status of ethiopian TB patients and their contacts over time.

There is an increasing body of evidence which suggests that IL-4 plays a role in the pathogenesis of TB, but a general consensus on its role remains elusive. We have previously published data from a cohort of Ethiopian TB patients, their contacts, and community controls suggesting that enhanced IL-4 production is associated with infection with M. tuberculosis, rather than overt disease and that long-term protection in infected community controls is associated with co-production of the IL-4 antagonist IL-4d2, alongside elevated IL-4. Here, for the first time, we compare data on expression of IFN-gamma, IL-4 and IL-4delta2 over time in TB patients and their household contacts. During the follow-up period, the TB patients completed therapy and ceased to display TB-like symptoms. This correlated with a decrease in the relative amount of IL-4 expressed. Over the same period, the clinical status of some of their contacts also changed, with a number developing TB-like symptoms or clinically apparent TB. IL-4 expression was disproportionately increased in this group. The findings support the hypothesis that elevated IL-4 production is generally associated with infection, but that TB disease is associated with a relatively increased expression of IL-4 compared to IFN-gamma and IL-4delta2. However, the data also suggest that there are no clear-cut differences between groups: the immune response over time appears to include changes in the expression of IFN-gamma, IL-4 and IL-4delta2, and it is the relative, not absolute levels of cytokine expression that are characteristic of clinical status

Improving the Training of Frontline Extension Workers in Tanzania: A Pilot Curriculum Reform Initiative with the Ministry of Agriculture Training Institute at Ilonga

Promoting the transition of smallholder farmers from subsistence to more commercial and market-oriented production is an important goal of the Tanzanian extension system. The Ministry of Agriculture Training Institutes (MATIs) contribute to this goal by providing training to frontline extension workers (FEWs). However, the capacity of the MATI system to produce agricultural extension practitioners with job-ready competencies has declined, leading stakeholders and employers to raise concerns about the quality and training of FEWs. The main purpose of this study was to develop recommendations for curriculum revisions at MATI Ilonga to improve its program of study. This was done using a competency-based approach that incorporated inputs from stakeholders into the curriculum assessment and revision process. A panel of eight local and external experts derived 23 competencies from a review of the MATI curriculum and extension literature. A survey instrument to assess competencies based on perceptions of importance and graduates’ ability was designed and administered to 189 stakeholders from four stakeholder groups. Stakeholder-respondents considered all but two of the 23 competencies to be very high importance. Weighted discrepancy scores indicated that the highest rated areas for curriculum revision were Value Chains, Business skills, Climate Change, Fisheries, and Land Resource Management. All stakeholder groups except graduates, indicated Value Chains and Business Skills as high priorities requiring enhanced training to improve the ability of FEWs. Follow-up stakeholder consultations indicated support for using the competency-based approach, engaging stakeholders in the curriculum review process, and interest in applying the approach with other MATIs in Tanzania

A micromechanical investigation of diagenetically-induced changes to the anisotropic elastic properties of calcareous mudstones

Microscale diagenetic changes that occur during burial exert a profound influence on the elastic and mechanical properties of sediments—but are poorly quantified. The focus here is on how diagenesis influences the elastic properties of carbonate-rich mudstones, which are subject to a wide range of physical and chemical changes. Nanoindentation data for gas-window (180 C) Eagle Ford formation samples give intrinsic indentation moduli of the clay-sized calcite matrix of 40–50 GPa, which contrasts with 60–77 GPa for diagenetic calcite fills of foraminifera tests, closer to values for highly crystalline calcite. The matrix calcite is weakly anisotropic. Inverse analysis of immature (< 70 C) organic-rich chalks gives much lower intrinsic indentation moduli for biogenic calcite, between 17 and 30 GPa; the calcite is also more anisotropic, with values of 1.3. Diagenesis, which includes recrystallisation and pore-filling cementation, results in calcite becoming elastically stiffer and behaving in an increasingly isotropic manner, in agreement with grain scale studies using atomic force microscopy. The results demonstrate that nanoindentation can resolve diagenetic contributions to the mechanical response of mudstones, and suggest intrinsic structural changes to calcite, in addition to diagenetic cementation, need to be accounted for in rock-physics models of mud-rich sediments

Coronavirus Replicase-Reporter Fusions Provide Quantitative Analysis of Replication and Replication Complex Formation

The replication of coronaviruses occurs in association with multiple virus-induced membrane structures that evolve during the course of infection; however, the dynamics of this process remain poorly understood. Previous studies of coronavirus replication complex organization and protein interactions have utilized protein overexpression studies and immunofluorescence of fixed cells. Additionally, live-imaging studies of coronavirus replicase proteins have used fluorescent reporter molecules fused to replicase proteins, but expressed from nonnative locations, mostly late-transcribed subgenomic mRNAs, in the presence or absence of the native protein. Thus, the timing and targeting of native replicase proteins expressed in real time from native locations in the genome remain unknown. In this study, we tested whether reporter molecules could be expressed from the replicase polyprotein of murine hepatitis virus as fusions with nonstructural protein 2 or 3 and whether such reporters could define the targeting and activity of replicase proteins during infection. We demonstrate that the fusion of green fluorescent protein and firefly luciferase with either nonstructural protein 2 or 3 is tolerated and that these reporter-replicase fusions can be used to quantitate replication complex formation and virus replication. The results show that the replicase gene has flexibility to accommodate a foreign gene addition and can be used directly to study replicase complex formation and evolution during infection as well as to provide highly sensitive and specific markers for protein translation and genome replication