6,196 research outputs found

    Do the mildly superluminal VLBI knots exclude ultrarelativistic blazar jets?

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    We compute the effective values of apparent transverse velocity and flux boosting factors for the VLBI radio knots of blazar jets, by integrating over the angular distributions of these quantities across the widths of jets with finite opening angles but constant velocities. For high bulk Lorentz factors (Gamma > 10) variations across the jet can be quite large if the opening angle, omega, is even a few degrees on sub-parsec scales. The resulting apparent speeds are often much lower than those obtained from the usual analyses that ignore the finite jet opening angles. We can thus reconcile the usually observed subluminal or mildly superluminal speeds with the very high (>~ 20) Gamma factors, required by the inverse Compton origin and rapid variability of TeV fluxes, as well as by intraday radio variability. Thus it is possible to associate the VLBI radio knots directly with shocks in the ultra-relativistic main jet flow, without invoking very rapid jet deceleration on parsec scales, or extremely unlikely viewing angles.Comment: 10 pages, 1 figure, to appear in ApJ Letters, Nov. 10 2004 issu

    Coarse Graining RNA Nanostructures for Molecular Dynamics Simulations

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    A series of coarse-grained models have been developed for the study of the molecular dynamics of RNA nanostructures. The models in the series have one to three beads per nucleotide and include different amounts of detailed structural information. Such a treatment allows us to reach, for the systems of thousands of nucleotides, a time scale of microseconds (i.e. by three orders of magnitude longer than in the full atomistic modelling) and thus to enable simulations of large RNA polymers in the context of bionanotechnology. We find that the 3-beads-per-nucleotide models, described by a set of just a few universal parameters, are able to describe different RNA conformations and are comparable in structural precision to the models where detailed values of the backbone P-C4' dihedrals taken from a reference structure are included. These findings are discussed in the context of the RNA conformation classes

    All-atom folding studies of a DNA binding protein in a free-energy force field

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    On the congruence subgroup problem: determination of the "Metaplectic Kernel"

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