A time series transcriptome analysis of cassava (Manihot esculenta Crantz) varieties challenged with Ugandan cassava brown streak virus

Open Access Journal; Published online: 29 August 2017A time-course transcriptome analysis of two cassava varieties that are either resistant or susceptible to cassava brown streak disease (CBSD) was conducted using RNASeq, after graft inoculation with Ugandan cassava brown streak virus (UCBSV). From approximately 1.92 billion short reads, the largest number of differentially expressed genes (DEGs) was obtained in the resistant (Namikonga) variety at 2 days after grafting (dag) (3887 DEGs) and 5 dag (4911 DEGs). At the same time points, several defense response genes (encoding LRR-containing, NBARC-containing, pathogenesis-related, late embryogenesis abundant, selected transcription factors, chaperones, and heat shock proteins) were highly expressed in Namikonga. Also, defense-related GO terms of ‘translational elongation’, ‘translation factor activity’, ‘ribosomal subunit’ and ‘phosphorelay signal transduction’, were overrepresented in Namikonga at these time points. More reads corresponding to UCBSV sequences were recovered from the susceptible variety (Albert) (733 and 1660 read counts per million (cpm)) at 45 dag and 54 dag compared to Namikonga (10 and 117 cpm respectively). These findings suggest that Namikonga’s resistance involves restriction of multiplication of UCBSV within the host. These findings can be used with other sources of evidence to identify candidate genes and biomarkers that would contribute substantially to knowledge-based resistance breeding

The Nature of the Hall Insulator

We have conducted an experimental study of the linear transport properties of the magnetic-field induced insulating phase which terminates the quantum Hall (QH) series in two dimensional electron systems. We found that a direct and simple relation exists between measurements of the longitudinal resistivity, $\rho_{xx}$, in this insulating phase and in the neighboring QH phase. In addition, we find that the Hall resistivity, $\rho_{xy}$, can be quantized in the insulating phase. Our results indicate that a close relation exists between the conduction mechanism in the insulator and in the QH liquid.Comment: RevTeX, 4 pages, 4 figure

Stability of Bose condensed atomic Li-7

We study the stability of a Bose condensate of atomic $^7$Li in a (harmonic oscillator) magnetic trap at non-zero temperatures. In analogy to the stability criterion for a neutron star, we conjecture that the gas becomes unstable if the free energy as a function of the central density of the cloud has a local extremum which conserves the number of particles. Moreover, we show that the number of condensate particles at the point of instability decreases with increasing temperature, and that for the temperature interval considered, the normal part of the gas is stable against density fluctuations at this point.Comment: Submitted for publication in Physical Review

Hund's Rule for Composite Fermions

We consider the ``fractional quantum Hall atom" in the vanishing Zeeman energy limit, and investigate the validity of Hund's maximum-spin rule for interacting electrons in various Landau levels. While it is not valid for {\em electrons} in the lowest Landau level, there are regions of filling factors where it predicts the ground state spin correctly {\em provided it is applied to composite fermions}. The composite fermion theory also reveals a ``self-similar" structure in the filling factor range $4/3>\nu>2/3$.Comment: 10 pages, revte

Superconductor-Insulator Transition in a Capacitively Coupled Dissipative Environment

We present results on disordered amorphous films which are expected to undergo a field-tuned Superconductor-Insulator Transition.The addition of a parallel ground plane in proximity to the film changes the character of the transition.Although the screening effects expected from "dirty-boson" theories are not evident,there is evidence that the ground plane couples a certain type of dissipation into the system,causing a dissipation-induced phase transition.The dissipation due to the phase transition couples similarly into quantum phase transition systems such as superconductor-insulator transitions and Josephson junction arrays.Comment: 4 pages, 4 figure

Quantum critical point and scaling in a layered array of ultrasmall Josephson junctions

We have studied a quantum Hamiltonian that models an array of ultrasmall Josephson junctions with short range Josephson couplings, $E_J$, and charging energies, $E_C$, due to the small capacitance of the junctions. We derive a new effective quantum spherical model for the array Hamiltonian. As an application we start by approximating the capacitance matrix by its self-capacitive limit and in the presence of an external uniform background of charges, $q_x$. In this limit we obtain the zero-temperature superconductor-insulator phase diagram, $E_J^{\rm crit}(E_C,q_x)$, that improves upon previous theoretical results that used a mean field theory approximation. Next we obtain a closed-form expression for the conductivity of a square array, and derive a universal scaling relation valid about the zero--temperature quantum critical point. In the latter regime the energy scale is determined by temperature and we establish universal scaling forms for the frequency dependence of the conductivity.Comment: 18 pages, four Postscript figures, REVTEX style, Physical Review B 1999. We have added one important reference to this version of the pape

Hydrodynamic behavior in expanding thermal clouds of Rb-87

We study hydrodynamic behavior in expanding thermal clouds of Rb-87 released from an elongated trap. At our highest densities the mean free path is smaller than the radial size of the cloud. After release the clouds expand anisotropically. The cloud temperature drops by as much as 30%. This is attributed to isentropic cooling during the early stages of the expansion. We present an analytical model to describe the expansion and to estimate the cooling. Important consequences for time-of-flight thermometry are discussed.Comment: 7 pages with 2 figure

True Superconductivity in a 2D "Superconducting-Insulating" System

We present results on disordered amorphous films which are expected to undergo a field-tuned Superconductor-Insulator Transition. Based on low-field data and I-V characteristics, we find evidence of a low temperature Metal-to-Superconductor transition. This transition is characterized by hysteretic magnetoresistance and discontinuities in the I-V curves. The metallic phase just above the transition is different from the "Fermi Metal" before superconductivity sets in.Comment: 3 pages, 4 figure

Astrophysical structures from primordial quantum black holes

The characteristic sizes of astrophysical structures, up to the whole observed Universe, can be recovered, in principle, assuming that gravity is the overall interaction assembling systems starting from microscopic scales, whose order of magnitude is ruled by the Planck length and the related Compton wavelength. This result agrees with the absence of screening mechanisms for the gravitational interaction and could be connected to the presence of Yukawa corrections in the Newtonian potential which introduce typical interaction lengths. This result directly comes out from quantization of primordial black holes and then characteristic interaction lengths directly emerge from quantum field theory.Comment: 11 page

Formality theorems for Hochschild complexes and their applications

We give a popular introduction to formality theorems for Hochschild complexes and their applications. We review some of the recent results and prove that the truncated Hochschild cochain complex of a polynomial algebra is non-formal.Comment: Submitted to proceedings of Poisson 200