Hormonal oestrus synchronization in four sheep breeds in Ethiopia: Impacts on genetic improvement and flock productivity

Global Affairs Canad

Direct detection and characterization of foot-and-mouth disease virus in East Africa using a field-ready real-time PCR platform

Effective control and monitoring of foot-and-mouth disease (FMD) relies upon rapid and accurate disease confirmation. Currently, clinical samples are usually tested in reference laboratories using standardized assays recommended by The World Organisation for Animal Health (OIE). However, the requirements for prompt and serotype-specific diagnosis during FMD outbreaks, and the need to establish robust laboratory testing capacity in FMD-endemic countries have motivated the development of simple diagnostic platforms to support local decision-making. Using a portable thermocycler, the T-COR™ 8, this study describes the laboratory and field evaluation of a commercially available, lyophilized pan-serotype-specific real-time RT-PCR (rRT-PCR) assay and a newly available FMD virus (FMDV) typing assay (East Africa-specific for serotypes: O, A, Southern African Territories [SAT] 1 and 2). Analytical sensitivity, diagnostic sensitivity and specificity of the pan-serotype-specific lyophilized assay were comparable to that of an OIE-recommended laboratory-based rRT-PCR (determined using a panel of 57 FMDV-positive samples and six non-FMDV vesicular disease samples for differential diagnosis). The FMDV-typing assay was able to correctly identify the serotype of 33/36 FMDV-positive samples (no cross-reactivity between serotypes was evident). Furthermore, the assays were able to accurately detect and type FMDV RNA in multiple sample types, including epithelial tissue suspensions, serum, oesophageal–pharyngeal (OP) fluid and oral swabs, both with and without the use of nucleic acid extraction. When deployed in laboratory and field settings in Tanzania, Kenya and Ethiopia, both assays reliably detected and serotyped FMDV RNA in samples (n = 144) collected from pre-clinical, clinical and clinically recovered cattle. These data support the use of field-ready rRT-PCR platforms in endemic settings for simple, highly sensitive and rapid detection and/or characterization of FMDV

Diarrhea prevalence and sociodemographic factors among under-five children in rural areas of North Gondar zone, Northwest Ethiopia

Published 3 June 2018Background. Diarrheal disease remains one of the principal causes of morbidity and mortality in infants and children in developing countries, including Ethiopia. Risk factors for diarrhea vary by settings and have important implications for developing intervention strategies to reduce the burden of the disease. Thus, the aim of this study was to assess diarrhea prevalence and sociodemographic factors among under-five children in rural areas of North Gondar Zone. Methods. A community-based cross-sectional study was conducted from April to June 2016 among 736 randomly selected households with one child under five years old. A structured questionnaire was used for collecting information on sociodemographic characteristics and diarrheal occurrence. Data was analyzed using SPSS version 20. The bivariate and multivariable logistic regression analysis were used to determine the association between risk factors and diarrheal occurrence, and a p value < 0.05 was taken as statistically significant. Results. A total of 736 under-five children and their respondents were enrolled during the study period. Almost all respondents were biological mothers 96.4% (709/736), married 94.2% (693/736), and house wives 86% (632/736). The overall prevalence of diarrheal disease among under-five children was 22.1% (163/743). Of these, children with age group of less than one year old, 7.7 % (57/736), were commonly infected with diarrheal diseases. Children less than or equal to one year [AOR=1.82, 95% CI= (1.39, 4.63)], guardians [AOR=4.37, 95% CI= (1.73, 11.1)], and children with no breast feeding practice [AOR=3.13, 95% CI= (1.62, 6.03)] were the major risk factors for the occurrence of diarrhea. Conclusion. Childhood diarrhea remains an important health concern in the study area. Occurrence of diarrhea was statistically associated with child age less than or equal to one year, educational status of mother/guardians, and breast feeding. To minimize the magnitude childhood diarrhea, various designing and implementing strategies, such as health education, child care, breast feeding, and weaning practice, integrated with the existing national health extension are quite essential.Atalay Getachew, Tadesse Guadu, Alebachew Tadie, Zemichael Gizaw, Mulat Gebrehiwot, Daniel Haile Cherkos, Martha Alemayehu Menberu, and Teklay Gebrecherko

Pattern and Outcome of Chest Injuries at Bugando Medical Centre in Northwestern Tanzania.

Chest injuries constitute a continuing challenge to the trauma or general surgeon practicing in developing countries. This study was conducted to outline the etiological spectrum, injury patterns and short term outcome of these injuries in our setting. This was a prospective study involving chest injury patients admitted to Bugando Medical Centre over a six-month period from November 2009 to April 2010 inclusive. A total of 150 chest injury patients were studied. Males outnumbered females by a ratio of 3.8:1. Their ages ranged from 1 to 80 years (mean = 32.17 years). The majority of patients (72.7%) sustained blunt injuries. Road traffic crush was the most common cause of injuries affecting 50.7% of patients. Chest wall wounds, hemothorax and rib fractures were the most common type of injuries accounting for 30.0%, 21.3% and 20.7% respectively. Associated injuries were noted in 56.0% of patients and head/neck (33.3%) and musculoskeletal regions (26.7%) were commonly affected. The majority of patients (55.3%) were treated successfully with non-operative approach. Underwater seal drainage was performed in 39 patients (19.3%). One patient (0.7%) underwent thoracotomy due to hemopericardium. Thirty nine patients (26.0%) had complications of which wound sepsis (14.7%) and complications of long bone fractures (12.0%) were the most common complications. The mean LOS was 13.17 days and mortality rate was 3.3%. Using multivariate logistic regression analysis, associated injuries, the type of injury, trauma scores (ISS, RTS and PTS) were found to be significant predictors of the LOS (P < 0.001), whereas mortality was significantly associated with pre-morbid illness, associated injuries, trauma scores (ISS, RTS and PTS), the need for ICU admission and the presence of complications (P < 0.001). Chest injuries resulting from RTCs remain a major public health problem in this part of Tanzania. Urgent preventive measures targeting at reducing the occurrence of RTCs is necessary to reduce the incidence of chest injuries in this region

Dynamics of soil quality in a conserved landscape in the highland sub humid ecosystem, Northwestern Ethiopia

Several studies have assessed the dynamics of soil quality induced by soil and water conservation (SWC), but many showed disagreement over the efficacy of SWC interventions in the Ethiopian highlands. This study used a before and after soil and water conservation practices (SWCP) comparison approach to evaluate the effect of SWCP on soil quality dynamics. Fifty-four composite and 10 undisturbed soil samples were collected in 2012 (before SWCP) and 2022 (after SWCP). Statistical mean, analysis of variance, and principal component analysis were applied to test the significant differences among treatments. The findings demonstrated that SWCP has significantly improved most of the soil quality indicators such as soil organic matter, total nitrogen, available phosphorous, pH, total porosity, field capacity, and available water, and reduced the value of bulk density and coarse fragments. The interaction effect of landscape position and types of structures provided statistically significant results for soil organic matter, total nitrogen, magnesium, calcium, and base saturation. Soil and stone-faced soil bunds treated at lower landscapes were superior in improving soil quality attributes. The soil quality indexing showed, the overall soil quality improvement as a result of SWCP was about 32.15%. The level of improvement for different SWCPs was 32% for stone faced soil bunds and 33% for soil bunds. The findings revealed that SWCP implementation can improve soil quality. Soil organic matter is a key biological quality component that contributed 25% to the soil quality index and highly impacted soil physicochemical properties. We suggest additional assessment of best and integrated land management practices to ensure further improvement in soil quality, crop productivity, and ecosystem services in the subhumid ecosystems

Genetic diversity in the Andes:variation within and between the South American species of <i>Oreobolus</i> R. Br. (Cyperaceae)

This is the author accepted manuscript. The final version is available from Springer Verlag via the DOI in this record.This study examines genetic relationships among and within the South American species of Oreobolus that span the temperate and tropical Andes hotspots and represent a good case study to investigate diversification in the Páramo. A total of 197 individuals covering the distributional range of most of these species were sequenced for the nuclear ribosomal internal transcribed spacer (ITS) and 118 individuals for three chloroplast DNA regions (trnL-F, trnH-psbA and rpl32-trnL). Haplotype networks and measures of genetic diversity were calculated at different taxonomic and geographic levels. To test for possible geographic structure, a spatial analysis of molecular variance (SAMOVA) was undertaken and species relationships were recovered using a coalescent-based approach. Results indicate complex relationships among the five South American species of Oreobolus, which are likely to have been confounded by incomplete lineage sorting, though hybridization cannot be completely discarded as an influence on genetic patterns, particularly among the northern populations of O. obtusangulus and O. cleefii. We report a case of cryptic speciation in O. obtusangulus where northern and southern populations of morphologically similar individuals are genetically distinct in all analyses. At the population level, the genetic evidence is consistent with contraction and expansion of islands of Páramo vegetation during the climatic fluctuations of the Quaternary, highlighting the role of these processes in shaping modern diversity in that ecosystem.This work was funded by a School of Biological Sciences Scholarship provided through The University of Edinburgh. We thank the herbaria at Aarhus University, (Denmark), Naturalis (The Netherlands) and Reading University (Great Britain) for making material available for DNA extraction. We also thank three anonymous reviewers for their valuable comments and James Nicholls from The University of Edinburgh for assistance with the *BEAST analysis