Effects of Temperature on Global Gene Expression in Natural Strains of Budding Yeast

Natural biological systems are resilient from the simplest form of unicellular organisms to the most complex form of multi-organ organisms. This resilience of a system manifests itself in two ways: returns to its current attractor or moves to a new attractor that maintains the system\u27s functions (Hiroaki Kitano, 2004). That is, a system can work to maintain its current state or change to a new state that allows it to properly function under perturbations. One such complex system is the regulation of gene expression in biological organisms in which recruitment of transcriptional machinery to gene regulatory regions activates and controls transcription of target genes. Systemic responses of gene expression to perturbations result in alteration or stability of gene expression in individual genes as well as the state of cellular functions. The objective of this work is to investigate the consequences of temperature perturbation on genome-wide gene expression with respect to cellular growth in two contrasting attributes: variation and robustness. We first characterize variation of genome-wide gene expression across five temperature conditions in three Saccharomyces cerevisiae strains--two natural strains and one laboratory strain--and investigate potential regulatory mechanisms of this expression variation. We show that as many as half of the number of genes in the genome exhibit expression variation but this gene expression variation is mostly specific to each strain. However, the global transcriptome displays a simple linear response to the temperature gradient manifested as a one-dimensional subspace, suggesting a global coordination of transcription against temperature perturbation. Next, we characterize the robustness of genome-wide gene expression against temperature perturbation and compare it against the genetic differences in gene expression among these three strains. We provide evidence to support a hypothesis that selective forces potentially drive congruent evolution of genetic and temperature robustness of genome-wide gene expression. We present results to support the hypothesis that greater selection for gene expression robustness against temperature perturbation occurs in the natural strains compared to the laboratory strain, and that the evolution of gene expression robustness likely involves trans-factors. In summary, we propose that a global regulatory coordination of transcription via trans-factors likely modulates genome-wide gene expression in relation to growth-permissive perturbations and drives congruent evolution of genetic robustness in the unicellular eukaryote, Saccharomyces cerevisiae

The Effect of Sodium Hexametaphosphate on the Palatability of the Freeze-Dried Chicken

Freeze-drying has been generally regarded as the mildest method known for drying meats, but even this process has caused undesirable changes in meat quality. The texture of rehydrated freeze-dried meat has been found to be tougher and drier than untreated meats. In addition, the meat may have a woody texture. Apparently something has occurred during the freeze-dry process that reduced the water-holding capacity of the meat. This has been reflected in the meat\u27s inability to become fully rehydrated. Sodium hexametaphosphate (SHNP) has been used successfully to increase the water-holding capacity of meat and fowl. No study has been conducted to ascertain if SHMP might have a similar effect on freeze-dried chicken meat. The present study was undertaken to determine the effect of SHMP on the palatability of freeze-dried chicken meat

KINETIC STUDY OF SYNTHESIS REACTION OF LIGNOSULFONATE USING ISOTHERMAL DIFFERENTIAL SCANNING CALORIMETRY METHOD

The kinetics of lignin methylsulfonation were studied in solution by using differential scanning calorimetry (DSC) techniques under an isothermal program, at 55, 65, 75 and 85°C, respectively. It was found that activation energy, Eα =  41.26 kJ/mol, and preexponential factor A was 1.85×103 s-1

Guide to Participatory Scenario Planning (PSP): Experiences from the Agro-Climate Information Services for women and ethnic minority farmers in South-East Asia (ACIS) project in Ha Tinh and Dien Bien province, Vietnam

The Participatory scenario planning (PSP) workshop is a valuable knowledge-sharing platform through which stakeholders, including those who support the implementation of PSP (i.e., meteorological and agricultural services) and those who access and use the climate information (i.e., technical experts, and farmers) meet to discuss adaptation actions within the context of climate information. The PSP approach was developed under CARE International’s Adaptation Learning Programme (ALP). It was then adapted to Vietnam, Laos, and Cambodia under the Agro-Climate Information Services for women and ethnic minority farmers in South-East Asia (ACIS) project by CARE International in Vietnam and World Agroforestry Centre (ICRAF) Vietnam

Updated molecular phylogenetic data for Opisthorchis spp. (Trematoda: Opisthorchioidea) from ducks in Vietnam

Background: An opisthorchiid liver fluke was recently reported from ducks (Anas platyrhynchos) in Binh Dinh Province of Central Vietnam, and referred to as "Opisthorchis viverrini-like". This species uses common cyprinoid fishes as second intermediate hosts as does Opisthorchis viverrini, with which it is sympatric in this province. In this study, we refer to the liver fluke from ducks as "Opisthorchis sp. BD2013", and provide new sequence data from the mitochondrial (mt) genome and the nuclear ribosomal transcription unit. A phylogenetic analysis was conducted to clarify the basal taxonomic position of this species from ducks within the genus Opisthorchis (Digenea: Opisthorchiidae). Methods: Adults and eggs of liver flukes were collected from ducks, metacercariae from fishes (Puntius brevis, Rasbora aurotaenia, Esomus metallicus) and cercariae from snails (Bithynia funiculata) in different localities in Binh Dinh Province. From four developmental life stage samples (adults, eggs, metacercariae and cercariae), the complete cytochrome b (cob), nicotinamide dehydrogenase subunit 1 (nad1) and cytochrome c oxidase subunit 1 (cox1) genes, and near-complete 18S and partial 28S ribosomal DNA (rDNA) sequences were obtained by PCR-coupled sequencing. The alignments of nucleotide sequences of concatenated cob + nad1 + cox1, and of concatenated 18S + 28S were separately subjected to phylogenetic analyses. Homologous sequences from other trematode species were included in each alignment. Results: Phylogenetic trees were inferred from concatenated (cob + nad1 + cox1) nucleotide sequences and combined 18S + 28S nucleotide sequences of five Opisthorchis sp. BD2013 samples and additional reference taxa. Both trees demonstrated the anticipated clustering of taxa within the superfamily Opisthorchioidea, the paraphyly of the genus Opisthorchis and the sister-species relationship of Opisthorchis sp. BD2013 with O. viverrini. Conclusions: While it is likely that Opisthorchis sp. BD2013 is distinct from O. viverrini, it is clearly a sister taxon of O. viverrini within the limited number of Opisthorchis species for which appropriate sequence data are available. The new sequences provided here will assist the diagnosis and the taxonomic clarification of the opisthorchiid species

Tuberculosis among economic migrants: a cross-sectional study of the risk of poor treatment outcomes and impact of a treatment adherence intervention among temporary residents in an urban district in Ho Chi Minh City, Viet Nam.

BACKGROUND Tuberculosis (TB) remains a major cause of avoidable deaths. Economic migrants represent a vulnerable population due to their exposure to medical and social risk factors. These factors expose them to higher risks for TB incidence and poor treatment outcomes. METHODS This cross-sectional study evaluated WHO-defined TB treatment outcomes among economic migrants in an urban district of Ho Chi Minh City, Viet Nam. We measured the association of a patient's government-defined residency status with treatment success and loss to follow-up categories at baseline and performed a comparative interrupted time series (ITS) analysis to assess the impact of community-based adherence support on treatment outcomes. Key measures of interest of the ITS were the differences in step change (β) and post-intervention trend (β). RESULTS Short-term, inter-province migrants experienced lower treatment success (aRR = 0.95 [95% CI: 0.92-0.99], p = 0.010) and higher loss to follow-up (aOR = 1.98 [95% CI: 1.44-2.72], p  55 years of age (aRR = 0.93 [95% CI: 0.89-0.96], p < 0.001), relapse patients (aRR = 0.89 [95% CI: 0.84-0.94], p < 0.001), and retreatment patients (aRR = 0.62 [95% CI: 0.52-0.75], p < 0.001) had lower treatment success rates. TB/HIV co-infection was also associated with lower treatment success (aRR = 0.77 [95% CI: 0.73-0.82], p < 0.001) and higher loss to follow-up (aOR = 2.18 [95% CI: 1.55-3.06], p < 0.001). The provision of treatment adherence support increased treatment success (IRR(β) = 1.07 [95% CI: 1.00, 1.15], p = 0.041) and reduced loss to follow-up (IRR(β) = 0.17 [95% CI: 0.04, 0.69], p = 0.013) in the intervention districts. Loss to follow-up continued to decline throughout the post-implementation period (IRR(β) = 0.90 [95% CI: 0.83, 0.98], p = 0.019). CONCLUSIONS Economic migrants, particularly those crossing provincial borders, have higher risk of poor treatment outcomes and should be prioritized for tailored adherence support. In light of accelerating urbanization in many regions of Asia, implementation trials are needed to inform evidence-based design of strategies for this vulnerable population

Nitrite metabolism of several bacterial strains isolated from abattoir and swine wastewater after biogas treatment

In nitrogen treatment with biological methods, nitrite metabolism is an intermediate process that facilitates other processes involving different bacteria strains. In this study, we isolated two nitrite-oxidising bacteria strains from abattoir wastewater and wastewater from biogas tanks of an industrial pig farm in Ha Tinh province. The bacteria strains grow, develop, and metabolise nitrite at pH 6–8 and 30–37 °C. The samples with the nitrite concentration up to 750 mg·L–1 were oxidised within four days of incubation, and the nitrite metabolism rate was proportional to the concentration of nitrite tested. Under severe conditions (salinity up to 3% NaCl, a low dissolved oxygen level of 0.1 mg·L–1), the two isolated bacterial strains exhibited their effective growth and nitrite metabolism capacity. The results enrich the database of nitrite-oxidising bacteria and are prospective in wastewater treatment

Features of trastuzumab-related cardiac dysfunction: deformation analysis outside left ventricular global longitudinal strain

BackgroundCancer therapy-related cardiac dysfunction due to trastuzumab has been well-known for many years, and echocardiographic surveillance is recommended every 3 months in patients undergoing trastuzumab treatment, irrespective of the baseline cardiotoxicity risk. However, the potential harm and cost of overscreening in low- and moderate-risk patients have become great concerns.ObjectivesThis study aimed to identify the incidence of early cancer therapy-related cardiac dysfunction (CTRCD) and the behaviours of left and right heart deformations during trastuzumab chemotherapy in low- and moderate-risk patients.MethodsWe prospectively enrolled 110 anthracycline-naïve women with breast cancer and cardiovascular risk factors who were scheduled to receive trastuzumab. The left ventricular ejection fraction (LVEF), left ventricular global longitudinal strain (LV-GLS), and right ventricular and left atrial longitudinal strains were evaluated using echocardiography at baseline, before every subsequent cycle and 3 weeks after the final dose of trastuzumab. The baseline risk of CTRCD was graded according to the risk score proposed by the Heart Failure Association (HFA) Cardio-Oncology Working Group and the International Cardio-Oncology Society (ICOS). CTRCD and its severity were defined according to the current European Society of Cardiology (ESC) guidelines.ResultsTwelve (10.9%) patients had asymptomatic CTRCD. All CTRCD occurred sporadically during the first 9 months of the active trastuzumab regimen in both low- and moderate-risk patients. While CTRCD was graded as moderate severity in 41.7% of patients and heart failure therapy was initiated promptly, no irreversible cardiotoxicity or trastuzumab interruption was recorded at the end of follow-up. Among the left and right heart deformation indices, only LV-GLS decreased significantly in the CTRCD group during the trastuzumab regimen.ConclusionsCTRCD is prevalent in patients with non-high-risk breast cancer undergoing trastuzumab chemotherapy. Low- and moderate-risk patients show distinct responses to trastuzumab. The LV-GLS is the only deformation index sensitive to early trastuzumab-related cardiac dysfunction

A comparative impact evaluation of two human resource models for community-based active tuberculosis case finding in Ho Chi Minh City, Viet Nam

Background: To achieve the WHO End TB Strategy targets, it is necessary to detect and treat more people with active TB early. Scale–up of active case finding (ACF) may be one strategy to achieve that goal. Given human resource constraints in the health systems of most high TB burden countries, volunteer community health workers (CHW) have been widely used to economically scale up TB ACF. However, more evidence is needed on the most cost-effective compensation models for these CHWs and their potential impact on case finding to inform optimal scale-up policies. Methods: We conducted a two-year, controlled intervention study in 12 districts of Ho Chi Minh City, Viet Nam. We engaged CHWs as salaried employees (3 districts) or incentivized volunteers (3 districts) to conduct ACF among contacts of people with TB and urban priority groups. Eligible persons were asked to attend health services for radiographic screening and rapid molecular diagnosis or smear microscopy. Individuals diagnosed with TB were linked to appropriate care. Six districts providing routine NTP care served as control area. We evaluated additional cases notified and conducted comparative interrupted time series (ITS) analyses to assess the impact of ACF by human resource model on TB case notifications. Results: We verbally screened 321,020 persons in the community, of whom 70,439 were eligible for testing and 1138 of them started TB treatment. ACF activities resulted in a + 15.9% [95% CI: + 15.0%, + 16.7%] rise in All Forms TB notifications in the intervention areas compared to control areas. The ITS analyses detected significant positive post-intervention trend differences in All Forms TB notification rates between the intervention and control areas (p = 0.001), as well as between the employee and volunteer human resource models (p = 0.021). Conclusions: Both salaried and volunteer CHW human resource models demonstrated additionality in case notifications compared to routine case finding by the government TB program. The salaried employee CHW model achieved a greater impact on notifications and should be prioritized for scale-up, given sufficient resources