Effect of H on the crystalline and magnetic structures of the YCo3-H(D) system. I. YCo3 from neutron powder diffraction and first-principles calculations

This paper reports investigations into the influence of hydrogen on the magnetic properties of the YCo3-H system. We report results on the magnetic structure and magnetic transitions of YCo3 using a combination of neutron powder diffraction measurements and first-principles full potential augmented plane wave + local orbital calculations under the generalized gradient approximation. The ferromagnetic and ferrimagnetic structures are examined on an equal footing. However, we identify that, no matter which structure is used as the starting point, the neutron diffraction data always refines down to the ferrimagnetic structure with the Co2 atoms having antiparallel spins. In the ab initio calculations, the inclusion of spin-orbit coupling is found to be important in the prediction of the correct magnetic ground state. Here, the results suggest that, for zero external field and sufficiently low temperatures, the spin arrangement of YCo3 is ferrimagnetic rather than ferromagnetic as previously believed. The fixed spin moment calculation technique has been employed to understand the two successive field-induced magnetic transitions observed in previous magnetization measurements under increasing ultrahigh magnetic fields. We find that the magnetic transitions start from the ferrimagnetic phase �0.61�B/Co� and terminate with the ferromagnetic phase �1.16�B/Co�, while the spin on the Co2 atoms progressively changes from antiparallel ferrimagnetic to paramagnetic and then to ferromagnetic. Our neutron diffraction measurements, ab initio calculations, and the high field magnetization measurements are thus entirely self-consistent

USING DNA AND ISOZYME MARKERS TO STUDY GENETIC RELATIONSHIP AMONG HIGH REGENERATIVE INTERSPECIFIC HYBRIDS OF HELIANTHUS EGGERTII SMALL. X HELIANTHUS ANNUUS L

ABSTRACT RAPD, AP-PCR, IFLP, SSR and isozymes marker

A large population of ultra-compact dwarf galaxies in the Hydra I cluster

We performed a large spectroscopic survey of compact, unresolved objects in the core of the Hydra I galaxy cluster (Abell 1060), with the aim of identifying ultra-compact dwarf galaxies (UCDs), and investigating the properties of the globular cluster (GC) system around the central cD galaxy NGC 3311. We obtained VIMOS medium resolution spectra of about 1200 candidate objects with apparent magnitudes 18.5 < V < 24.0 mag, covering both the bright end of the GC luminosity function and the luminosity range of all known UCDs. By means of spectroscopic redshift measurements, we identified 118 cluster members, from which 52 are brighter than M_V = -11.0 mag, and can therefore be termed UCDs. The brightest UCD in our sample has an absolute magnitude of M_V = -13.4 mag (corresponding to a mass of > 5 x 10^7 M_sun) and a half-light radius of 25 pc. This places it among the brightest and most massive UCDs ever discovered. Most of the GCs/UCDs are both spatially and dynamically associated to the central cD galaxy. The overall velocity dispersion of the GCs/UCDs is comparable to what is found for the cluster galaxies. However, when splitting the sample into a bright and a faint part, we observe a lower velocity dispersion for the bright UCDs/GCs than for the fainter objects. At a dividing magnitude of M_V = -10.75 mag, the dispersions differ by more than 200 km/s, and up to 300 km/s for objects within 5 arcmin around NGC 3311. We interpret these results in the context of different UCD formation channels, and conclude that interaction driven formation seems to play an important role in the centre of Hydra I.Comment: 18 pages, 17 figures, accepted for publication in A&

Protein Design Using Continuous Rotamers

Optimizing amino acid conformation and identity is a central problem in computational protein design. Protein design algorithms must allow realistic protein flexibility to occur during this optimization, or they may fail to find the best sequence with the lowest energy. Most design algorithms implement side-chain flexibility by allowing the side chains to move between a small set of discrete, low-energy states, which we call rigid rotamers. In this work we show that allowing continuous side-chain flexibility (which we call continuous rotamers) greatly improves protein flexibility modeling. We present a large-scale study that compares the sequences and best energy conformations in 69 protein-core redesigns using a rigid-rotamer model versus a continuous-rotamer model. We show that in nearly all of our redesigns the sequence found by the continuous-rotamer model is different and has a lower energy than the one found by the rigid-rotamer model. Moreover, the sequences found by the continuous-rotamer model are more similar to the native sequences. We then show that the seemingly easy solution of sampling more rigid rotamers within the continuous region is not a practical alternative to a continuous-rotamer model: at computationally feasible resolutions, using more rigid rotamers was never better than a continuous-rotamer model and almost always resulted in higher energies. Finally, we present a new protein design algorithm based on the dead-end elimination (DEE) algorithm, which we call iMinDEE, that makes the use of continuous rotamers feasible in larger systems. iMinDEE guarantees finding the optimal answer while pruning the search space with close to the same efficiency of DEE. Availability: Software is available under the Lesser GNU Public License v3. Contact the authors for source code

Cyclophyllidea van Beneden in Braun, 1900

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License

Two formation channels of UCDs in Hickson Compact Groups

The formation of ultra-compact dwarf galaxies (UCDs) is believed to be interaction driven, and UCDs are abundant in the cores of galaxy clusters, environments that mark the end-point of galaxy evolution. Nothing is known about the properties of UCDs in compact groups of galaxies, environments where most of galaxy evolution and interaction is believed to occur and where UCDs in intermediate state of evolution may be expected. The main goal of this study is to detect and characterize, for the first time, the UCD population of compact groups. For that, 2 groups in different evolutionary stages, HCG 22 and HCG 90, were targeted with VLT/FORS2/MXU. We detect 16 and 5 objects belonging to HCG 22 and HCG 90, respectively, covering the magnitude range -10.0 > M_R > -11.5 mag. Their colours are consistent with old ages covering a broad range in metallicities. Photometric mass estimates put 4 objects in HCG 90 and 9 in HCG 22 in the mass range of UCDs (>2x10^6 M_Sun) for an assumed age of 12 Gyr. These UCDs are on average 2-3 times larger than typical Galactic GCs, covering a range of 2 >~ r_h >~ 21 pc. The UCDs in HCG 22 are more concentrated around the central galaxy than in HCG 90, at the 99% confidence level. They cover a broad range in [alpha/Fe] abundances from sub- to super-solar. The spectra of 3 UCDs show tentative evidence for intermediate age stellar populations. We calculate the specific frequency (S_N) of UCDs for both groups, finding that HCG 22 has about three times higher S_N than HCG 90. The ensemble properties of the detected UCDs supports 2 co-existing formation channels: a star cluster origin and an origin as tidally stripped dwarf nuclei. Our results imply that the UCDs detected in both groups do not, in their majority, originate from relatively recent galaxy interactions. Most of the detected UCDs have likely been brought into the group with their host galaxies.[abridged]Comment: Accepted for publication at A&A, 17 pages, 9 figures + 2 additional figure

T-systems and Y-systems in integrable systems

The T and Y-systems are ubiquitous structures in classical and quantum integrable systems. They are difference equations having a variety of aspects related to commuting transfer matrices in solvable lattice models, q-characters of Kirillov-Reshetikhin modules of quantum affine algebras, cluster algebras with coefficients, periodicity conjectures of Zamolodchikov and others, dilogarithm identities in conformal field theory, difference analogue of L-operators in KP hierarchy, Stokes phenomena in 1d Schr\"odinger problem, AdS/CFT correspondence, Toda field equations on discrete space-time, Laplace sequence in discrete geometry, Fermionic character formulas and combinatorial completeness of Bethe ansatz, Q-system and ideal gas with exclusion statistics, analytic and thermodynamic Bethe ans\"atze, quantum transfer matrix method and so forth. This review article is a collection of short reviews on these topics which can be read more or less independently.Comment: 156 pages. Minor corrections including the last paragraph of sec.3.5, eqs.(4.1), (5.28), (9.37) and (13.54). The published version (JPA topical review) also needs these correction

Additive Protection by Antioxidant and Apoptosis-Inhibiting Effects on Mosquito Cells with Dengue 2 Virus Infection

Cytopathic effects (CPEs) in mosquito cells are generally trivial compared to those that occur in mammalian cells, which usually end up undergoing apoptosis during dengue virus (DENV) infection. However, oxidative stress was detected in both types of infected cells. Despite this, the survival of mosquito cells benefits from the upregulation of genes related to antioxidant defense, such as glutathione S transferase (GST). A second defense system, i.e., consisting of antiapoptotic effects, was also shown to play a role in protecting mosquito cells against DENV infection. This system is regulated by an inhibitor of apoptosis (IAP) that is an upstream regulator of caspases-9 and -3. DENV-infected C6/36 cells with double knockdown of GST and the IAP showed a synergistic effect on activation of these two caspases, causing a higher rate of apoptosis (>20%) than those with knockdown of each single gene (∼10%). It seems that the IAP acts as a second line of defense with an additional effect on the survival of mosquito cells with DENV infection. Compared to mammalian cells, residual hydrogen peroxide in DENV-infected C6/36 cells may signal for upregulation of the IAP. This novel finding sheds light on virus/cell interactions and their coevolution that may elucidate how mosquitoes can be a vector of DENV and probably most other arboviruses in nature