Carpooling with ecologists, geographers and taxonomists: perceptions from conducting environmental research in tropical regions

Greater than 80% of species on Earth are awaiting formal description, and simultaneously, many of these species unknown to science are becoming extinct. Here we highlight the importance and benefits of collaborating and working in interdisciplinary research groups, to improve quality and efficiency of both ecological and taxonomic research. The aim of this paper is to share and critique two methods used when conducting environmental field research in taxonomically data-poor parts of the world, such as Borneo. Through discussions with geographers, ecologists and taxonomists these two methods are evaluated. We conclude with a suggested solution to push taxonomic knowledge barriers by creating inter-disciplinary communities of researchers who work together to improve taxonomic identifications

Space colonization by branching trachea explains the morphospace of a simple respiratory organ

Branching morphogenesis helps increase the efficiency of gas and liquid transport in many animal organs. Studies in several model organisms have highlighted the molecular and cellular complexity behind branching morphogenesis. To understand this complexity, computational models have been developed with the goal of identifying the “major rules” that globally explain the branching patterns. These models also guide further experimental exploration of the biological processes that execute and maintain these rules. In this paper we introduce the tracheal gills of mayfly (Ephemeroptera) larvae as a model system to study the generation of branched respiratory patterns. First, we describe the gills of the mayfly Cloeon dipterum, and quantitatively characterize the geometry of its branching trachea. We next extend this characterization to those of related species to generate the morphospace of branching patterns. Then, we show how an algorithm based on the “space colonization” concept (SCA) can generate this branching morphospace via growth towards a hypothetical attractor molecule (M). SCA differs from other branch-generating algorithms in that the geometry generated depends to a great extent on its perception of the “external” space available for branching, uses few rules and, importantly, can be easily translated into a realistic “biological patterning algorithm”. We identified a gene in the C. dipterum genome (Cd-bnl) that is orthologous to the fibroblast growth factor branchless (bnl), which stimulates growth and branching of embryonic trachea in Drosophila. In C. dipterum, this gene is expressed in the gill margins and areas of finer tracheolar branching from thicker trachea. Thus, Cd-bnl may perform the function of M in our model. Finally, we discuss this general mechanism in the context of other branching pattern-generating algorithms.Grants: 1455906 (National Science Foundation, USA) to DHF; TIN2017-89842P (MINECO/AEI, Spain, co-financed by FEDER funds (EU)) to FJ and MCL; 657732 (Marie Sklodowska-Curie Program, EU) to IA; BFU2015-66040-P and PGC2018-093704-B-I00 (MINECO/AEI, Spain co-financed by FEDER funds (EU)) to FC and institutional grant MDM-2016-0687 (MINECO/AEI, Spain co-financed by FEDER funds (EU)) in which FC is participant researcher.Peer reviewe

Expression of miR-487b and miR-410 encoded by 14q32.31 locus is a prognostic marker in neuroblastoma

BACKGROUND: Combination of age at diagnosis, stage and MYCN amplification stratifies neuroblastoma into low-risk and high-risk. We aimed to establish whether a microRNA (miRNA) signature could be associated with prognosis in both groups. METHODS: Microarray expression profiling of human miRNAs and quantitative reverse-transcriptase PCR of selected miRNAs were performed on a preliminary cohort of 13 patients. Results were validated on an independent cohort of 214 patients. The relationship between miRNA expression and the overall or disease-free survival was analysed on the total cohort of 227 patients using the log-rank test and the multivariable Cox proportional hazard model. RESULTS: A total of 15 of 17 miRNAs that discriminated high-risk from low-risk neuroblastoma belonged to the imprinted human 14q32.31 miRNA cluster and two, miR-487b and miR-410, were significantly downregulated in the high-risk group. Multivariable analyses showed miR-487b expression as associated with overall survival and disease-free survival in the whole cohort, independently of clinical covariates. Moreover, miR-487b and miR-410 expression was significantly associated with disease-free survival of the non-MYCN-amplified favourable neuroblastoma: localised (stage 1, 2 and 3) and stage 4 of infant <18 months. CONCLUSION: Expression of miR-487b and miR-410 shows predictive value beyond the classical high-/low-risk stratification and is a biomarker of relapse in favourable neuroblastoma