Insights and benefits from monocot palaeobiology: DNA, fossils and phylogenetic analyses

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/111911/1/boj12290.pd

Fossil flowers from the early Palaeocene of Patagonia, Argentina, with affinity to Schizomerieae (Cunoniaceae)

Background and Aims: Early Palaeocene (Danian) plant fossils from Patagonia provide information on the recovery from the end-Cretaceous extinction and Cenozoic floristic change in South America. Actinomorphic flowers with eight to ten perianth parts are described and evaluated in a phylogenetic framework. The goal of this study is to determine the identity of these fossil flowers and to discuss their evolutionary, palaeoecological and biogeographical significance. Methods: More than 100 fossilized flowers were collected from three localities in the Danian Salamanca and Peñas Coloradas Formations in southern Chubut. They were prepared, photographed and compared with similar extant and fossil flowers using published literature and herbarium specimens. Phylogenetic analysis was performed using morphological and molecular data. Key results: The fossil flowers share some but not all the synapomorphies that characterize the Schizomerieae, a tribe within Cunoniaceae. These features include the shallow floral cup, variable number of perianth parts arranged in two whorls, laciniate petals, anthers with a connective extension, and a superior ovary with free styles. The number of perianth parts is doubled and the in situ pollen is tricolporate, with a surface more like that of other Cunoniaceae outside Schizomerieae, such as Davidsonia or Weinmannia. Conclusions: An extinct genus of crown-group Cunoniaceae is recognized and placed along the stem lineage leading to Schizomerieae. Extant relatives are typical of tropical to southern-temperate rainforests, and these fossils likely indicate a similarly warm and wet temperate palaeoclimate. The oldest reliable occurrences of the family are fossil pollen and wood from the Upper Cretaceous of the Antarctica and Argentina, whereas in Australia the family first occurs in upper Palaeocene deposits. This discovery demonstrates that the family survived the Cretaceous-Palaeogene boundary event in Patagonia and that diversification of extant lineages in the family was under way by the earliest Cenozoic.Fil: Jud, Nathan A.. Cornell University; Estados UnidosFil: Gandolfo, Maria Alejandra. Cornell University; Estados UnidosFil: Iglesias, Ari. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; ArgentinaFil: Wilf, Peter. State University of Pennsylvania; Estados Unido

Fossil moonseeds from the Paleogene of West Gondwana (Patagonia, Argentina)

Premise of the Study: The fossil record is critical for testing biogeographic hypotheses. Menispermaceae (moonseeds) are a widespread family with a rich fossil record and alternative hypotheses related to their origin and diversification. The family is well-represented in Cenozoic deposits of the northern hemisphere, but the record in the southern hemisphere is sparse. Filling in the southern record of moonseeds will improve our ability to evaluate alternative biogeographic hypotheses. Methods: Fossils were collected from the Salamanca (early Paleocene, Danian) and the Huitrera (early Eocene, Ypresian) formations in Chubut Province, Argentina. We photographed them using light microscopy, epifluorescence, and scanning electron microscopy and compared the fossils with similar extant and fossil Menispermaceae using herbarium specimens and published literature. Key Results: We describe fossil leaves and endocarps attributed to Menispermaceae from Argentinean Patagonia. The leaves are identified to the family, and the endocarps are further identified to the tribe Cissampelideae. The Salamancan endocarp is assigned to the extant genus Stephania. These fossils significantly expand the known range of Menispermaceae in South America, and they include the oldest (ca. 64 Ma) unequivocal evidence of the family worldwide. Conclusions: Our findings highlight the importance of West Gondwana in the evolution of Menispermaceae during the Paleogene. Currently, the fossil record does not discern between a Laurasian or Gondwanan origin; however, it does demonstrate that Menispermaceae grew well outside the tropics by the early Paleocene. The endocarps’ affinity with Cissampelideae suggests that diversification of the family was well underway by the earliest Paleocene.Fil: Jud, Nathan A.. Cornell University; Estados UnidosFil: Iglesias, Ari. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; ArgentinaFil: Wilf, Peter. State University of Pennsylvania; Estados UnidosFil: Gandolfo, Maria Alejandra. Cornell University; Estados Unido

The Plant Ontology: A common reference ontology for plants

The Plant Ontology (PO) (http://www.plantontology.org) (Jaiswal et al., 2005; Avraham et al., 2008) was designed to facilitate cross-database querying and to foster consistent use of plant-specific terminology in annotation. As new data are generated from the ever-expanding list of plant genome projects, the need for a consistent, cross-taxon vocabulary has grown. To meet this need, the PO is being expanded to represent all plants. This is the first ontology designed to encompass anatomical structures as well as growth and developmental stages across such a broad taxonomic range. While other ontologies such as the Gene Ontology (GO) (The Gene Ontology Consortium, 2010) or Cell Type Ontology (CL) (Bard et al., 2005) cover all living organisms, they are confined to structures at the cellular level and below. The diversity of growth forms and life histories within plants presents a challenge, but also provides unique opportunities to study developmental and evolutionary homology across organisms

Monocot fossils suitable for molecular dating analyses

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/111920/1/boj12233.pd

Arecaceae Fossil Fruits from the Paleocene of Patagonia, Argentina

We describe fossil fruits collected from outcrops of the Salamanca Fm. (Paleocene, Danian, 63. 3-61. 9 Ma) at the Estancia Las Violetas locality, Chubut, Argentina that show affinities with members of the Subtribe Attaleinae, Tribe Cocoseae, Subfamily Arecoideae within the Arecaceae. The fossils are preserved as permineralizations, and were examined by longitudinal, tangential and cross-sections, as well as by the application of Computed Tomography Scanning technology (CT Scan). The fruits are ovoid drupes with 3 longitudinal grooves delimiting three valves; displaying apical stigmatic remains and a single apical germination pore. The exocarp and mesocarp are fused and anatomically indistinguishable one from another; they contain longitudinal fibrous bands with brachysclereids. A centrally placed seed occupies the single locule entirely; the seeds are deltoid with a basal hilum and acuminate tip while the endosperm is ruminate. The taxonomic position of the fossils was explored using phylogenetic analyses of molecular sequences combined with morphological data. Along with the suite of morphological characters that points to an affinity with the Subtribe Attaleinae, Tribe Cocoseae, subfamily Arecoideae, the results of the combined phylogenetic analyses confirm the taxonomic placement. This report constitutes the first confirmed record for the Subtribe Attaleinae worldwide and the first record of fossil palm fruits from Argentina.Fil: Futey, Mary K.. Cornell University; Estados UnidosFil: Gandolfo, Maria A.. Cornell University; Estados UnidosFil: Zamaloa, María del Carmen. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución; ArgentinaFil: Cúneo, Néstor Rubén. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Museo Paleontológico Egidio Feruglio; ArgentinaFil: Cladera, Gerardo. Museo Paleontológico Egidio Feruglio; Argentin

Solitary intrathyroidal metastasis of renal clear cell carcinoma in a toxic substernal multinodular goiter.

INTRODUCTION: Thyroid gland is a rare site of clinically detectable tumor metastasis. CASE REPORT: A 71-year-old woman was referred to our department for an evaluation of toxic multinodular substernal goiter. She had a history of renal clear cell carcinoma of the left kidney, which had been resected 2 years previously. US confirmed the multinodular goiter. Total thyroidectomy with neuromonitoring was performed on March 2008. A histological examination revealed a solitary metastasis of a clear cell renal cancer in a diffuse multinodular goiter. No distant metastases are detected. CONCLUSION: Although uncommon, it is important for the endocrine surgeon and endocrine oncologist to be able to recognize and differentiate intrathyroid metastases from more primary common thyroid neoplasms. The diagnosis can be suspected if the patient has a thyroid tumor and a past history of extrathyroid cancer. These tumors, on the whole, tend to behave more aggressively and, in most cases, the use of multimodality therapy is recommende

A new cupressaceous wood from the Lower Cretaceous of central Patagonia reveals possible clonal growth habit

A new genus and species, Austrocupressinoxylon barcinense, based on remains of cupressaceous wood is described for the Lower Cretaceous of central Patagonia, Argentina. The studied specimens are silicified fragments of picnoxylic and homoxylic wood that exhibit a combination of characters not previously reported, therefore a new genus is erected. The characters are: 1- growth ring boundaries distinct, 2- transition from earlywood to latewood gradual, 3- axial parenchyma diffuse,4- radial tracheid pitting predominantly abietinean,5- cross-field pitting cupressoid, arranged in both cupressoid and araucarioid patterns, 6- rays uniseriate heterocellular, 7- end and horizontal walls of ray parenchyma cells smooth or slightly nodular, and 8- ray tracheids with smooth walls. The cross-field pitting patterns and the presence of ray tracheids are two traits of particular interest in the context of systematic affinities. The fragments were collected from two stumps found in life position attached to each other by a main root, consequently, the disposition of the stumps suggests a case of clonal growth by root suckering. This is the second report of such mechanisms in the fossil records worldwide and the first one for South America.Facultad de Ciencias Naturales y Muse

Ontologies as Integrative Tools for Plant Science

Premise of the study: Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregation of data and a semantic framework for automated analyses and reasoning. They are a key component of the semantic web. Methods: This paper provides background on what bio-ontologies are, why they are relevant to botany, and the principles of ontology development. It includes an overview of ontologies and related resources that are relevant to plant science, with a detailed description of the Plant Ontology (PO). We discuss the challenges of building an ontology that covers all green plants (Viridiplantae). Key results: Ontologies can advance plant science in four keys areas: (1) comparative genetics, genomics, phenomics, and development; (2) taxonomy and systematics; (3) semantic applications; and (4) education. Conclusions: Bio-ontologies offer a flexible framework for comparative plant biology, based on common botanical understanding. As genomic and phenomic data become available for more species, we anticipate that the annotation of data with ontology terms will become less centralized, while at the same time, the need for cross-species queries will become more common, causing more researchers in plant science to turn to ontologies.Keywords: Bio-ontologies, Plant Ontology, Plant genomics, OBO Foundry, Plant systematics, Plant anatomy, Genome annotation, Semantic web, PhenomicsKeywords: Bio-ontologies, Plant Ontology, Plant genomics, OBO Foundry, Plant systematics, Plant anatomy, Genome annotation, Semantic web, Phenomic